genome.fa.s9.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  22  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7339010--7339058	19	2.6	19	80	6	55	34	2	4	59	1.28
7341983--7342059	36	2.1	38	81	13	90	63	1	2	32	1.16
7342038--7342076	17	2.2	17	90	4	60	71	2	7	17	1.21
7342212--7342262	19	2.9	17	78	16	50	35	5	0	58	1.22
7342255--7342291	7	5.6	7	81	12	51	24	10	0	64	1.25
7342253--7342292	12	3.2	12	83	13	53	22	10	0	67	1.20
7342305--7342519	93	2.4	90	82	8	267	31	7	20	39	1.82
7346868--7346903	18	2.1	17	89	5	54	38	5	0	55	1.23
7352396--7352438	22	2.0	22	90	0	68	6	9	0	83	0.80
7359259--7359343	42	2.0	42	100	0	170	21	11	29	37	1.89
7360014--7360047	11	3.0	11	95	4	59	26	17	2	52	1.58
7374907--7375032	30	4.2	30	75	8	123	34	20	5	38	1.76
7375596--7375647	11	4.7	11	75	17	54	75	0	25	0	0.81
7375593--7375655	22	2.6	25	80	16	80	74	0	25	0	0.82
7376516--7376555	16	2.4	17	83	8	55	20	10	12	57	1.63
7376566--7376602	19	1.9	19	89	10	58	24	10	10	54	1.67
7376626--7376692	17	3.9	17	82	5	82	31	14	10	43	1.80
7376625--7376692	34	2.0	34	91	8	111	32	14	10	42	1.80
7376648--7376729	44	1.9	42	90	5	128	26	13	12	47	1.78
7376838--7376941	16	6.1	16	75	13	84	29	13	12	44	1.81
7376816--7376939	16	7.3	18	73	20	81	33	12	12	41	1.80
7376861--7376939	36	2.2	36	88	4	115	35	13	11	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7376826--7376938	17	6.6	17	77	9	90	29	13	13	44	1.81
7378924--7378955	11	2.9	11	100	0	64	28	34	0	37	1.57
7379485--7379529	7	6.3	7	80	14	56	44	44	0	11	1.39
7379501--7379544	13	3.3	13	80	3	52	50	40	0	9	1.34
7401488--7401668	95	1.9	94	88	1	272	39	19	12	28	1.88
7412445--7412535	43	2.1	43	83	0	110	38	18	20	21	1.93
7412520--7412754	43	5.6	39	77	7	148	24	16	29	29	1.96
7412556--7412768	82	2.5	82	84	3	275	23	15	30	30	1.95
7413616--7413648	13	2.5	13	86	13	50	21	24	0	54	1.45
7414138--7414255	26	4.7	26	66	22	63	38	16	0	44	1.48
7414109--7414256	74	2.0	74	100	0	296	37	17	0	44	1.49
7417575--7417613	19	2.0	20	85	10	53	28	5	0	66	1.12
7419188--7419264	9	8.4	9	81	8	75	24	9	24	41	1.84
7421817--7421842	3	8.7	3	100	0	52	65	0	34	0	0.93
7424595--7424639	3	15.0	3	81	9	56	31	4	2	62	1.27
7424595--7424650	15	3.5	15	77	13	58	32	5	3	58	1.37
7427140--7427188	16	2.8	17	82	11	55	26	6	4	63	1.36
7432247--7432271	6	4.2	6	100	0	50	36	48	16	0	1.46
7441272--7441334	31	2.1	31	90	3	101	46	12	9	31	1.74
7445929--7445975	19	2.5	19	77	12	53	61	0	2	36	1.08
7446120--7446161	18	2.3	19	79	4	50	19	9	0	71	1.13
7446249--7446465	91	2.4	91	83	6	257	34	8	17	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7449918--7450762	422	2.0	423	99	0	1674	39	24	14	21	1.90
7452174--7452216	20	2.2	20	87	4	61	34	6	6	51	1.56
7452178--7452224	19	2.4	19	83	13	60	36	6	6	51	1.53
7460178--7460231	22	2.5	21	82	5	63	33	1	25	38	1.67
7464238--7464415	44	4.0	44	78	9	159	32	19	22	25	1.97
7465441--7465483	20	2.2	20	87	4	61	34	6	6	51	1.56
7465445--7465491	19	2.4	19	83	13	60	36	6	6	51	1.53
7472316--7472435	16	6.9	17	67	18	50	63	1	4	30	1.23
7472373--7472411	16	2.4	16	86	0	51	64	2	2	30	1.21
7472374--7472430	25	2.3	25	81	6	62	64	1	5	28	1.25
7476825--7476859	18	1.9	18	88	11	54	57	2	11	28	1.48
7484308--7484416	57	1.9	57	86	3	157	30	18	26	24	1.98
7489724--7489765	21	2.0	21	100	0	84	61	4	14	19	1.49
7495185--7495224	2	20.5	2	89	5	64	45	2	0	52	1.14
7497704--7497736	17	2.0	16	94	5	57	69	0	0	30	0.88
7497700--7497742	17	2.5	18	82	17	56	69	0	0	30	0.88
7497731--7497755	13	1.9	13	100	0	50	64	0	4	32	1.12
7507225--7507279	28	1.9	29	85	3	76	16	34	3	45	1.65
7516019--7516053	17	2.2	15	90	10	52	88	0	11	0	0.51
7518676--7518757	40	2.0	40	95	0	146	29	23	14	32	1.94
7520413--7520488	31	2.5	30	85	6	91	32	10	11	44	1.75
7521011--7521149	41	3.1	45	70	17	153	35	5	12	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7521055--7521087	17	1.9	17	100	0	66	39	0	18	42	1.50
7520992--7521126	41	3.1	42	70	16	130	35	5	12	45	1.66
7521849--7521884	3	12.0	3	100	0	72	33	33	0	33	1.58
7525737--7525769	16	2.1	16	100	0	66	27	6	30	36	1.81
7528662--7528686	3	8.3	3	100	0	50	32	0	32	36	1.58
7531918--7531983	24	2.8	23	73	15	64	51	6	6	36	1.51
7532073--7532175	47	2.2	45	79	6	109	54	4	6	33	1.48
7532881--7532914	13	2.5	14	85	9	52	17	17	17	47	1.84
7534343--7534446	37	2.7	37	80	5	118	35	25	15	23	1.94
7535290--7535328	20	2.0	20	85	10	53	0	23	5	71	1.05
7541185--7541270	3	29.7	3	88	4	124	32	3	0	63	1.11
7542372--7542403	15	2.1	15	94	0	55	78	0	0	21	0.76
7543168--7543196	8	3.6	8	100	0	58	0	10	0	89	0.48
7543534--7543582	24	2.0	25	84	8	64	18	2	8	71	1.21
7548615--7548693	29	2.6	30	82	10	88	51	1	1	45	1.17
7548672--7548712	17	2.4	17	83	0	55	63	2	0	34	1.08
7553497--7553526	3	10.0	3	100	0	60	33	0	0	66	0.92
7562040--7562080	13	3.1	14	79	10	50	17	17	17	48	1.81
7563435--7563467	11	2.9	12	86	13	52	33	0	0	66	0.92
7563591--7563653	30	2.1	30	96	0	117	57	12	3	26	1.51
7567101--7567300	69	2.9	69	79	0	193	20	28	19	32	1.97
7568782--7568833	22	2.3	23	77	12	54	48	21	1	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7572170--7572223	24	2.2	24	90	0	90	22	7	35	35	1.82
7575964--7576050	43	2.0	43	95	0	156	39	36	10	13	1.79
7582157--7582192	19	1.9	18	88	5	54	36	11	22	30	1.89
7582324--7582367	20	2.2	20	83	0	52	61	13	6	18	1.54
7587239--7587289	25	2.0	25	96	0	93	31	37	5	25	1.80
7599015--7599055	20	2.0	20	100	0	82	14	24	9	51	1.72
7600798--7600856	31	1.9	31	85	0	82	54	8	11	25	1.65
7602909--7602956	24	2.0	24	87	0	69	31	18	25	25	1.98
7607258--7607317	28	2.1	28	82	11	70	36	0	1	61	1.06
7607257--7607316	27	2.2	27	80	13	70	35	0	1	63	1.05
7607824--7607863	19	2.2	18	86	4	53	75	10	0	15	1.05
7608820--7608844	13	1.9	13	100	0	50	48	0	0	52	1.00
7613164--7613195	17	1.9	16	93	6	55	68	0	0	31	0.90
7613160--7613202	17	2.4	20	71	28	51	65	0	4	30	1.13
7620231--7620289	31	1.9	31	82	6	75	27	22	3	47	1.67
7622217--7622248	2	16.0	2	100	0	64	50	0	0	50	1.00
7623168--7623237	27	2.6	27	80	6	72	22	4	5	67	1.30
7623364--7624869	110	13.6	110	90	4	2175	31	15	18	35	1.92
7628524--7628575	23	2.2	24	86	6	72	30	3	17	48	1.65
7630727--7630899	37	4.6	37	67	25	114	36	2	4	56	1.35
7630695--7630921	113	2.0	114	98	0	438	34	4	4	56	1.41
7630876--7630929	25	2.1	27	82	6	67	40	0	1	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7636880--7636954	37	2.0	37	94	0	132	45	20	13	21	1.84
7637466--7637938	238	2.0	236	94	1	840	24	16	17	41	1.89
7639253--7639405	75	2.0	76	98	1	299	12	12	16	58	1.62
7641015--7641087	33	2.2	32	86	11	96	38	0	6	54	1.27
7641416--7641445	15	1.9	16	93	6	53	66	10	13	10	1.44
7641434--7641485	25	2.1	25	85	7	70	67	3	28	0	1.08
7641630--7641687	29	2.0	29	80	12	66	31	1	25	41	1.66
7642207--7642256	18	2.8	17	82	8	55	48	0	20	32	1.50
7642355--7642461	38	2.7	39	77	7	110	22	18	26	32	1.97
7645263--7645316	28	1.9	28	96	0	99	12	27	31	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131