genome.fa.s9.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  39  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12779897--12779933	19	2.1	19	90	10	60	40	8	0	51	1.32
12783986--12784029	20	2.3	18	84	7	52	59	0	22	18	1.38
12786098--12786172	32	2.3	32	95	0	132	57	20	1	21	1.48
12786784--12786827	10	4.6	10	83	5	56	22	43	0	34	1.54
12798648--12799186	267	2.0	266	95	0	970	38	12	17	30	1.87
12815386--12815584	99	2.0	100	97	1	373	42	24	11	21	1.86
12824587--12824629	15	2.7	15	85	7	50	65	0	20	13	1.27
12825890--12826475	44	13.6	44	82	6	709	30	17	25	26	1.98
12826073--12826138	34	1.9	34	87	0	96	33	15	27	24	1.95
12826029--12826183	78	2.0	78	87	5	224	32	16	25	25	1.96
12828013--12828043	14	2.2	14	94	0	53	19	3	0	77	0.90
12837145--12837175	16	1.9	16	100	0	62	51	6	6	35	1.53
12839745--12839801	23	2.6	22	81	13	64	38	8	14	38	1.77
12839752--12839811	23	2.7	23	79	7	61	38	5	15	41	1.68
12845538--12845580	8	5.6	8	83	5	54	72	2	13	11	1.22
12845539--12845580	7	5.7	7	83	10	57	71	2	14	11	1.24
12846849--12847195	132	2.6	132	84	3	423	30	19	23	26	1.98
12847096--12847191	43	2.2	44	79	9	106	29	19	21	29	1.98
12847399--12847462	19	3.3	19	87	8	92	40	9	14	35	1.78
12847400--12847475	21	3.7	21	91	3	111	42	10	11	35	1.76
12847467--12847511	21	2.0	23	83	8	58	37	4	13	44	1.64
12848161--12848403	98	2.5	97	86	6	242	34	7	6	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12848217--12848403	98	1.9	98	98	1	365	33	8	7	50	1.61
12853604--12853633	11	2.7	11	100	0	60	16	10	10	63	1.51
12860768--12860844	27	2.9	27	88	0	91	28	23	12	35	1.92
12879417--12879696	148	1.9	147	81	5	341	25	26	15	32	1.95
12883632--12883703	36	2.0	35	81	2	81	30	11	25	33	1.90
12912422--12912501	29	2.7	29	84	3	106	45	26	11	17	1.82
12926877--12926944	35	1.9	35	96	0	127	35	22	22	20	1.96
12931625--12931683	30	2.0	30	86	0	82	40	15	20	23	1.90
12931690--12931773	40	2.1	40	86	2	116	39	4	17	38	1.71
12937333--12937399	28	2.4	28	80	9	82	20	7	7	64	1.44
12942498--12942558	22	2.8	22	79	0	77	68	6	21	3	1.27
12954863--12954896	17	2.0	17	100	0	68	35	23	23	17	1.95
12963543--12963632	46	2.0	46	84	0	117	40	16	17	25	1.91
12963927--12964188	131	2.0	131	98	0	506	36	28	7	27	1.84
12967225--12967333	48	2.3	48	83	3	130	34	21	25	18	1.96
12967232--12967333	24	4.2	24	74	8	100	34	21	25	18	1.96
12967252--12967376	49	2.6	47	80	7	126	35	19	26	19	1.95
12967226--12967379	25	6.3	25	66	17	81	33	19	27	19	1.96
12971362--12971396	18	1.9	18	94	0	61	5	11	25	57	1.56
12971357--12971400	18	2.7	15	78	18	52	4	9	29	56	1.50
12974059--12974097	21	1.9	19	85	10	51	61	2	7	28	1.37
12974833--12974955	59	2.1	59	100	0	246	24	23	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12975006--12975073	29	2.3	30	82	12	88	36	2	2	57	1.29
12975847--12976087	59	4.1	59	100	0	482	24	23	14	37	1.93
12976138--12976205	29	2.3	30	82	12	88	36	2	2	57	1.29
12984514--12984542	6	4.8	6	100	0	58	34	0	48	17	1.47
12984572--12984610	20	2.0	19	85	5	51	48	2	23	25	1.63
12989242--12989291	22	2.3	22	89	0	82	12	28	4	56	1.54
13011636--13011684	24	2.0	24	100	0	98	51	4	16	28	1.63
13014532--13014654	21	6.0	21	83	5	146	13	22	17	46	1.83
13014885--13014911	8	3.4	8	100	0	54	37	0	14	48	1.45
13020050--13020099	24	2.1	23	82	10	57	24	6	0	70	1.10
13029632--13029697	24	2.7	25	73	13	66	37	10	21	30	1.87
13032133--13032188	27	2.0	29	89	6	89	12	3	8	75	1.17
13038895--13039023	50	2.6	50	85	2	161	28	24	29	17	1.97
13038906--13039076	50	3.4	49	79	8	143	28	22	28	21	1.99
13039288--13039336	20	2.5	20	75	15	57	59	6	22	12	1.55
13043581--13043631	23	2.2	23	86	6	68	33	7	13	45	1.73
13047179--13047216	14	2.7	14	87	0	58	5	28	0	65	1.14
13057774--13057912	43	3.3	43	76	7	149	34	27	14	23	1.94
13060513--13062145	818	2.0	818	94	0	2890	35	16	15	32	1.90
13071338--13071371	17	2.1	17	94	5	61	76	0	0	23	0.79
13071399--13071436	16	2.4	16	86	8	51	68	0	0	31	0.90
13071419--13071456	19	2.0	20	89	5	60	73	2	0	23	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13071494--13071525	16	2.0	16	100	0	64	37	31	6	25	1.81
13073932--13073973	18	2.3	18	91	0	66	50	0	40	9	1.35
13073950--13074053	44	2.4	44	86	0	136	43	7	31	17	1.77
13074109--13074291	41	4.5	41	81	2	199	20	21	20	38	1.94
13074109--13074291	82	2.2	81	84	4	226	20	21	20	38	1.94
13074445--13074562	41	2.9	41	78	6	132	22	22	21	33	1.97
13074167--13074719	278	2.0	278	91	1	894	26	20	20	31	1.98
13081918--13081962	23	2.0	23	82	8	56	33	4	11	51	1.58
13088929--13089088	41	3.9	41	94	0	284	27	21	23	28	1.99
13091575--13091636	31	2.0	31	81	9	74	61	0	19	19	1.35
13092596--13092745	65	2.3	65	92	0	255	21	20	22	36	1.96
13092898--13092954	26	2.2	26	87	6	80	14	21	21	43	1.87
13094855--13095047	44	4.4	44	84	2	226	34	10	15	39	1.82
13097633--13097718	43	2.0	43	86	4	120	52	2	23	22	1.59
13102006--13102046	21	2.0	21	85	0	55	46	4	26	21	1.72
13107091--13107285	108	1.8	108	90	0	318	29	13	23	33	1.93
13109364--13109391	13	2.2	13	100	0	56	42	0	0	57	0.99
13115065--13115094	6	4.8	6	92	8	51	33	0	0	66	0.92
13115065--13115094	13	2.4	12	94	5	51	33	0	0	66	0.92
13118144--13118190	21	2.2	22	92	3	78	21	38	19	21	1.94
13145699--13145730	15	2.1	15	94	0	55	46	15	0	37	1.46
13151056--13151166	28	4.1	28	76	10	106	50	18	12	18	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13152298--13152442	60	2.5	57	81	7	177	44	1	3	50	1.27
13152612--13152652	16	2.6	16	88	0	55	29	29	2	39	1.70
13154589--13154619	16	1.9	16	100	0	62	38	9	0	51	1.35
13159419--13159470	24	2.2	24	85	0	68	38	3	7	50	1.50
13159436--13159481	24	1.9	24	86	8	67	41	4	6	47	1.49
13167556--13167677	57	2.1	57	81	3	138	49	5	18	27	1.70
13171840--13172344	252	2.0	254	90	3	804	32	14	14	38	1.87
13183036--13183082	20	2.3	20	82	10	51	51	8	6	34	1.58
13183789--13183835	19	2.5	20	80	13	55	46	0	34	19	1.50
13195764--13195921	69	2.3	69	82	0	172	35	25	10	29	1.88
13195764--13195933	23	7.4	23	78	0	133	34	25	10	28	1.89
13195879--13195953	23	3.3	23	77	3	71	30	22	10	36	1.88
13196009--13196053	18	2.6	17	82	6	54	26	35	15	22	1.94
13196017--13196053	18	2.1	18	89	0	56	27	40	13	18	1.88
13196145--13196237	38	2.5	38	87	1	125	21	26	20	31	1.98
13196331--13196374	23	1.9	23	85	0	61	27	13	18	40	1.88
13196410--13196457	22	2.2	22	88	0	69	39	20	14	25	1.91
13197090--13197134	18	2.5	18	85	7	56	17	17	20	44	1.87
13197109--13197146	17	2.2	18	85	4	51	21	15	18	44	1.86
13197591--13197690	48	2.1	49	92	1	166	33	5	22	40	1.75
13199779--13199824	23	2.0	23	87	8	67	36	4	21	36	1.74
13205124--13205172	16	3.1	16	96	0	89	36	4	36	22	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13218460--13218585	26	4.9	26	84	10	161	32	15	20	31	1.93
13218455--13218585	52	2.5	52	85	8	187	33	14	20	31	1.93
13218453--13218601	77	1.9	78	81	14	184	32	16	21	30	1.95
13226111--13226169	30	1.9	31	86	3	84	32	23	25	18	1.97
13226515--13226574	27	2.2	27	84	0	75	20	20	25	35	1.96
13226525--13226666	27	5.3	27	78	5	155	19	20	19	40	1.91
13227774--13227815	12	3.4	12	75	18	50	26	40	4	28	1.76
13228979--13229084	41	2.6	41	93	0	176	23	22	24	29	1.99
13230329--13230391	20	3.1	20	77	11	74	50	0	4	44	1.23
13230332--13230391	10	5.8	10	78	11	59	48	0	5	46	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131