genome.fa.s9.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  34  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11033959--11034021	29	2.1	31	91	5	103	34	0	0	65	0.93
11034114--11034143	14	2.1	15	93	6	53	26	0	6	66	1.16
11039450--11039507	19	3.1	19	78	11	57	72	6	6	13	1.26
11042240--11042272	16	1.9	18	88	11	52	42	0	6	51	1.26
11051657--11051695	19	2.1	19	95	0	69	58	15	12	12	1.62
11057422--11057446	6	4.2	6	100	0	50	84	0	0	16	0.63
11057344--11057553	111	1.9	111	85	3	289	36	14	23	25	1.93
11064467--11064532	29	2.3	29	83	0	78	31	30	4	33	1.78
11064610--11064648	6	6.3	6	90	3	60	38	43	0	17	1.50
11065035--11065109	15	5.1	15	70	20	68	52	5	5	37	1.47
11065038--11065125	44	2.0	44	100	0	176	50	9	4	36	1.55
11065272--11065322	17	3.2	17	68	21	56	74	7	0	17	1.05
11065257--11065322	30	2.2	31	97	2	125	74	7	0	18	1.05
11065300--11065467	77	2.2	77	96	2	311	51	8	1	38	1.41
11065543--11065626	10	8.9	10	71	18	56	65	0	32	2	1.05
11065543--11065647	38	2.8	38	86	2	142	67	0	30	1	1.01
11065595--11065659	23	2.8	23	80	2	76	72	0	24	3	0.99
11066370--11066421	19	2.7	19	82	8	61	26	0	7	65	1.20
11066457--11066512	28	2.0	28	93	6	96	37	8	0	53	1.32
11071995--11072075	27	3.0	27	76	7	101	9	43	20	25	1.83
11072100--11072136	14	2.8	14	84	12	51	0	2	18	78	0.87
11072137--11072205	27	2.5	29	90	6	108	47	1	10	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11072141--11072205	28	2.4	27	89	7	96	47	1	10	40	1.48
11072907--11073063	77	2.0	78	98	1	307	45	6	11	36	1.66
11074882--11074969	40	2.2	40	84	9	110	37	18	7	36	1.80
11075690--11075715	11	2.4	11	100	0	52	0	42	7	50	1.31
11079561--11079680	60	2.0	60	95	3	215	25	5	49	20	1.69
11079688--11079723	18	2.0	18	89	10	56	25	5	47	22	1.73
11079793--11080271	57	8.4	56	73	17	281	23	11	37	26	1.90
11079889--11080091	48	3.9	48	72	20	172	23	12	39	24	1.89
11079954--11080050	33	2.9	33	84	0	131	21	10	37	30	1.87
11079905--11080240	114	2.9	114	93	4	546	23	11	36	28	1.90
11080074--11080246	33	5.5	33	75	12	157	23	11	36	28	1.90
11080230--11080390	24	6.6	24	71	12	112	24	7	39	28	1.82
11079891--11080369	57	8.7	52	74	16	282	23	10	38	27	1.88
11080235--11080369	48	2.7	50	87	3	193	24	7	40	28	1.82
11082958--11083045	28	3.0	29	75	16	85	44	1	1	53	1.15
11082992--11083033	21	2.0	20	86	4	57	42	2	2	52	1.27
11082963--11083042	29	2.8	27	75	14	81	45	1	1	52	1.16
11090901--11091117	41	5.3	42	83	6	257	17	19	29	33	1.95
11090901--11091117	82	2.6	82	86	1	292	17	19	29	33	1.95
11091403--11091430	2	14.0	2	100	0	56	50	0	0	50	1.00
11091581--11091631	23	2.3	22	93	6	93	23	0	17	58	1.38
11091582--11091643	23	2.7	23	90	5	72	25	1	19	53	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11094038--11094209	89	2.0	87	88	2	254	34	13	7	44	1.73
11094578--11094750	88	2.0	88	82	6	217	43	7	12	36	1.71
11095338--11095366	2	14.5	2	100	0	58	51	0	0	48	1.00
11095512--11095553	18	2.4	18	88	4	59	50	4	0	45	1.23
11095645--11095689	24	1.9	24	86	4	65	40	6	2	51	1.41
11104637--11104686	24	2.2	23	79	10	57	48	2	0	50	1.12
11106459--11106513	28	1.9	29	85	3	76	30	21	14	32	1.93
11106697--11106727	9	3.4	9	100	0	62	77	0	12	9	0.99
11106899--11106951	19	2.7	18	77	13	52	30	7	32	30	1.85
11109977--11110095	61	2.0	61	100	0	238	31	12	30	26	1.93
11110153--11110198	18	2.7	18	86	6	60	45	10	10	32	1.74
11115041--11115082	21	2.0	21	95	0	75	21	14	26	38	1.91
11115187--11115217	2	15.5	2	100	0	62	48	0	51	0	1.00
11115423--11115463	21	2.0	21	100	0	82	29	14	21	34	1.93
11116731--11117025	147	2.0	148	99	0	583	42	17	14	25	1.88
11117661--11117690	15	2.0	15	100	0	60	20	13	33	33	1.91
11118391--11118549	79	2.0	79	100	0	318	32	18	18	30	1.96
11140429--11140489	31	2.0	31	90	6	97	37	1	0	60	1.07
11151594--11151643	18	2.9	17	84	3	64	46	2	0	52	1.12
11152837--11152888	27	1.9	27	84	0	68	23	34	26	15	1.94
11158782--11158834	27	2.0	27	88	0	79	22	24	16	35	1.95
11159537--11159708	94	1.9	90	85	7	238	46	8	7	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11166592--11166684	26	3.6	26	76	5	98	40	31	11	16	1.84
11172752--11172872	43	2.8	43	72	12	122	19	20	29	29	1.97
11173528--11173567	22	2.0	20	85	14	55	25	2	17	55	1.55
11174468--11174499	2	15.5	2	93	6	55	46	3	0	50	1.17
11184872--11185056	101	1.8	102	88	3	284	24	17	27	30	1.97
11184872--11185063	51	3.8	49	79	4	197	24	18	27	30	1.98
11184978--11185058	26	3.2	26	66	22	71	24	13	28	33	1.93
11185284--11185315	16	2.0	16	93	0	55	59	0	15	25	1.36
11193074--11193184	40	2.8	40	81	2	134	38	16	27	17	1.91
11193072--11193241	20	8.4	20	67	13	82	40	17	28	14	1.89
11195196--11195241	23	2.0	23	91	0	74	28	32	10	28	1.91
11196445--11196490	23	2.0	23	91	0	74	28	32	10	28	1.91
11197128--11197187	29	2.1	29	87	6	86	40	11	31	16	1.85
11197130--11197197	29	2.4	28	83	11	84	36	10	36	16	1.82
11203674--11203805	50	2.6	50	85	3	167	25	17	26	31	1.97
11203728--11203809	26	3.2	26	61	22	64	25	14	26	32	1.95
11213771--11213833	28	2.3	28	89	8	94	39	19	14	26	1.90
11229094--11229163	30	2.3	31	80	7	90	42	1	20	35	1.61
11230111--11230141	11	2.8	11	95	0	53	61	0	12	25	1.32
11240264--11240403	41	3.4	41	84	2	185	50	6	23	20	1.71
11264544--11264650	53	2.0	53	92	3	180	23	24	11	41	1.87
11270348--11270372	5	5.0	5	100	0	50	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11286182--11286335	45	3.4	45	81	7	202	42	9	23	25	1.83
11290905--11290952	23	2.1	23	88	0	69	39	4	12	43	1.62
11291800--11291886	48	1.9	45	86	11	124	25	28	19	26	1.99
11295283--11295313	9	3.4	9	90	0	53	25	12	22	38	1.90
11295366--11295420	9	6.1	9	95	0	101	45	12	10	30	1.77
11296081--11296111	5	6.2	5	100	0	62	22	19	19	38	1.93
11297134--11297179	23	2.0	23	91	0	74	23	17	21	36	1.94
11297186--11297243	21	2.8	21	81	2	73	15	25	24	34	1.95
11297628--11297674	25	1.9	24	100	0	85	38	4	17	40	1.69
11298559--11298702	45	3.2	45	85	3	198	43	11	21	23	1.86
11298561--11298630	22	3.1	22	66	18	63	44	12	22	20	1.85
11298560--11298701	47	3.1	47	88	2	207	43	11	21	22	1.85
11306754--11306908	37	4.2	37	82	5	161	32	16	17	34	1.92
11306765--11306903	74	1.9	74	85	5	192	33	14	17	35	1.90
11312439--11312477	18	2.2	17	86	13	53	33	0	20	46	1.51
11312595--11312623	8	3.6	8	100	0	58	24	13	27	34	1.93
11312710--11312831	23	5.3	23	87	2	174	20	22	27	29	1.99
11312710--11312831	46	2.7	46	89	2	192	20	22	27	29	1.99
11317770--11317833	25	2.6	25	90	2	94	29	20	28	21	1.98
11317770--11317842	24	3.0	24	88	4	101	31	19	27	21	1.97
11330166--11330207	22	1.9	22	85	9	59	45	23	2	28	1.66
11330572--11330604	3	11.0	3	93	0	57	0	30	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11332492--11332548	23	2.5	24	80	11	66	43	24	10	21	1.83
11337451--11337498	21	2.2	22	92	3	80	25	0	0	75	0.81
11339665--11339709	20	2.2	21	84	11	67	13	13	17	55	1.69
11341671--11341880	45	4.7	45	88	1	262	40	15	18	25	1.90
11341808--11342009	90	2.2	90	80	9	216	45	15	19	18	1.85
11341808--11341969	46	3.6	45	84	7	197	45	14	20	19	1.85
11343373--11343442	26	2.7	26	90	0	113	28	30	20	21	1.98
11352891--11352935	21	2.1	21	87	0	63	46	0	20	33	1.51
11353039--11353087	22	2.2	22	82	7	64	10	32	18	38	1.84
11353532--11353567	16	2.2	16	100	0	72	38	0	13	47	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131