genome.fa.s9.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  78  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26198920--26199356	223	2.0	220	87	3	626	31	15	18	34	1.92
26202587--26202621	17	2.1	16	94	5	61	80	5	2	11	1.00
26202634--26202673	6	6.3	6	83	11	53	77	0	22	0	0.77
26202634--26202671	10	3.7	10	83	16	51	78	0	21	0	0.74
26202634--26202672	20	2.0	19	95	5	69	79	0	20	0	0.73
26203629--26203670	20	2.1	20	83	16	52	73	0	23	2	0.94
26203773--26203886	43	2.7	43	79	6	115	29	15	28	25	1.96
26203804--26203886	44	1.9	44	85	7	116	27	14	30	27	1.95
26204966--26205416	46	9.8	46	93	1	719	24	17	29	28	1.97
26206964--26207035	3	24.0	3	97	0	135	33	1	0	65	1.02
26207351--26207403	23	2.4	22	81	18	65	26	13	3	56	1.54
26207351--26207402	22	2.3	24	84	15	67	25	13	3	57	1.53
26207423--26207748	111	3.0	112	83	4	403	31	15	18	34	1.92
26211025--26211076	23	2.3	23	89	0	77	32	15	11	40	1.83
26219894--26220008	57	2.0	57	96	0	212	38	15	21	24	1.92
26227351--26227440	38	2.4	38	98	0	171	21	34	15	28	1.94
26228959--26228999	18	2.3	18	87	8	57	65	2	9	21	1.34
26230690--26231136	45	9.7	45	70	13	153	29	21	17	31	1.96
26230553--26230875	96	3.5	96	76	10	255	28	21	18	31	1.97
26230836--26231169	89	3.7	89	75	8	244	28	22	16	32	1.95
26230556--26231178	44	13.6	45	70	12	326	28	21	17	31	1.96
26238607--26238636	12	2.5	12	100	0	60	36	6	13	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26240492--26240598	45	2.4	45	84	1	126	36	29	13	20	1.90
26240505--26240695	45	4.2	45	77	6	136	35	25	13	26	1.92
26240575--26240700	45	2.8	45	78	4	137	36	23	12	27	1.91
26254872--26254904	14	2.4	14	90	5	50	66	3	9	21	1.33
26256777--26256832	17	3.2	17	89	2	85	53	16	3	26	1.59
26258779--26258813	18	1.9	18	100	0	70	45	14	0	40	1.45
26260135--26260168	18	2.0	16	88	11	50	35	0	0	64	0.94
26260297--26260478	89	2.0	90	98	1	357	40	19	8	31	1.82
26262024--26262111	44	2.0	44	97	0	167	57	6	18	17	1.60
26263023--26263056	17	2.0	17	100	0	68	23	35	5	35	1.79
26268973--26269007	18	2.0	17	88	5	52	34	0	0	65	0.93
26274444--26274587	33	4.3	34	66	11	100	34	16	20	27	1.95
26274404--26274621	101	2.2	101	88	3	323	33	15	24	27	1.95
26276216--26276248	16	2.1	16	94	0	57	45	0	0	54	0.99
26276997--26277106	55	2.0	55	96	0	202	30	10	19	39	1.86
26279899--26280065	30	5.5	30	77	4	156	25	26	11	36	1.90
26279896--26280122	91	2.5	91	88	0	319	25	26	11	37	1.89
26280050--26280122	30	2.4	31	86	2	94	26	23	8	42	1.82
26283168--26283220	21	2.5	21	90	0	79	30	35	9	24	1.87
26286177--26286228	22	2.5	19	76	14	50	28	1	15	53	1.52
26292700--26292735	17	2.2	16	90	5	54	63	0	0	36	0.94
26294834--26294871	19	2.1	18	85	14	51	2	5	23	68	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26300230--26300381	50	2.9	51	85	5	189	26	20	30	22	1.98
26300305--26300454	77	1.9	77	80	0	174	26	21	29	22	1.99
26305852--26306081	50	4.5	51	90	4	313	26	19	30	23	1.98
26309941--26309994	21	2.6	21	82	5	65	25	35	20	18	1.95
26310856--26310899	21	2.2	20	84	12	54	45	4	13	36	1.64
26315274--26315409	43	3.2	44	85	4	145	33	30	14	21	1.93
26315541--26315658	29	4.1	29	65	19	68	42	5	5	47	1.47
26315489--26315658	84	2.0	85	98	1	333	40	4	4	50	1.44
26315851--26315881	16	1.9	16	93	0	53	58	9	0	32	1.31
26320132--26320181	26	1.9	26	88	8	75	58	18	14	10	1.63
26321170--26321302	7	18.7	7	72	9	63	42	37	0	19	1.57
26321200--26321338	14	9.8	14	69	9	66	45	33	0	20	1.57
26321223--26321297	21	3.5	21	76	7	71	41	41	0	17	1.49
26321200--26321338	7	19.6	7	72	5	55	45	33	0	20	1.57
26321502--26321670	80	2.1	82	82	6	202	45	26	1	26	1.61
26321664--26321729	35	1.9	35	81	9	82	34	40	0	24	1.55
26321696--26321733	14	2.7	14	95	0	67	44	36	0	18	1.50
26321741--26321770	15	2.1	15	93	6	53	33	36	0	30	1.58
26322316--26322511	41	4.8	41	90	1	304	30	32	19	17	1.96
26322762--26322820	29	2.0	29	100	0	118	44	6	13	35	1.71
26328722--26328751	3	10.0	3	92	0	51	36	0	63	0	0.95
26333891--26334125	117	2.0	117	98	0	452	42	14	16	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26335973--26336024	17	3.1	17	82	0	68	36	5	21	36	1.77
26344966--26345009	9	5.1	9	78	10	56	52	4	0	43	1.22
26345027--26345062	18	1.9	18	88	5	54	44	0	0	55	0.99
26345713--26345764	22	2.4	22	77	6	52	28	15	17	38	1.90
26353158--26353254	32	3.1	32	67	14	94	32	12	17	37	1.87
26356518--26356564	19	2.6	19	75	18	55	38	2	4	55	1.31
26356630--26356672	14	3.0	14	86	10	52	72	2	25	0	0.97
26364627--26364660	13	2.6	13	85	0	50	0	14	2	82	0.79
26367044--26367083	14	2.9	14	80	0	53	32	7	15	45	1.74
26367067--26367106	20	2.0	20	90	0	62	27	10	12	50	1.72
26367052--26367118	34	1.9	35	87	3	100	32	8	10	47	1.69
26369515--26369569	23	2.4	23	96	0	101	36	10	29	23	1.89
26372690--26372739	22	2.3	22	89	3	75	56	2	0	42	1.11
26386394--26386463	34	2.1	34	100	0	140	22	17	17	42	1.88
26392969--26393000	9	3.6	9	91	0	55	12	18	0	68	1.20
26397838--26398539	183	3.8	183	92	0	1127	42	19	8	29	1.80
26398179--26398437	30	8.5	29	69	16	125	43	20	7	28	1.79
26397838--26398539	368	1.9	366	91	1	1145	42	19	8	29	1.80
26401504--26401564	26	2.3	26	85	0	86	39	9	9	40	1.72
26405932--26406121	41	4.6	41	81	1	220	20	18	26	34	1.95
26405994--26406024	16	1.9	16	93	0	53	12	22	25	38	1.90
26412665--26412737	28	2.7	27	75	19	73	64	1	4	30	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26412743--26412785	20	2.2	20	86	0	59	67	0	4	27	1.10
26412708--26412849	10	14.7	10	65	19	52	64	1	4	30	1.21
26413063--26413099	11	3.2	12	88	7	51	40	0	0	59	0.97
26413049--26413098	22	2.4	21	78	12	59	42	0	0	58	0.98
26413066--26413095	11	2.6	12	89	10	53	40	0	0	60	0.97
26413070--26413143	29	2.5	29	80	6	78	37	2	1	58	1.21
26413129--26413161	15	2.1	17	88	11	52	24	3	0	72	0.98
26416623--26416667	20	2.2	20	84	7	56	48	8	28	13	1.72
26420667--26420850	98	1.9	98	93	2	316	35	23	10	29	1.88
26422844--26422975	19	6.8	19	88	3	192	36	14	10	38	1.81
26422855--26422974	59	2.0	59	90	0	186	37	13	10	39	1.78
26423279--26423381	43	2.4	43	85	0	143	27	9	17	45	1.79
26423365--26423393	13	2.2	13	100	0	58	31	0	20	48	1.50
26423273--26423507	99	2.4	99	99	0	461	27	9	18	44	1.81
26423332--26423437	56	1.9	56	88	0	158	27	9	16	46	1.78
26423378--26423480	43	2.4	43	85	0	143	27	9	17	45	1.79
26423464--26423492	13	2.2	13	100	0	58	31	0	20	48	1.50
26439173--26439203	16	1.9	16	100	0	62	22	12	0	64	1.27
26441204--26441261	29	2.0	29	100	0	116	6	24	0	68	1.13
26444358--26444456	51	1.9	50	80	11	112	24	22	1	52	1.53
26445233--26445263	7	4.4	7	91	0	53	41	38	0	19	1.51
26445732--26445771	18	2.2	18	91	8	64	22	2	0	75	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26447182--26447291	33	3.4	31	70	21	100	60	2	1	35	1.22
26447182--26447287	32	3.3	32	73	13	101	59	2	1	35	1.23
26447287--26447527	59	4.1	59	71	13	185	43	2	2	51	1.30
26448300--26448366	34	1.9	35	87	3	100	31	8	14	44	1.76
26449767--26449816	19	2.6	19	75	12	57	38	8	12	42	1.71
26449953--26450033	21	3.9	21	93	0	135	44	12	9	33	1.75
26450965--26451093	52	2.4	52	83	10	163	17	32	24	26	1.96
26451359--26451437	23	3.3	23	91	3	113	44	25	6	24	1.77
26470549--26470592	22	1.9	24	86	9	65	45	2	11	40	1.53
26483000--26483071	38	1.9	37	85	2	99	33	4	27	34	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131