genome.fa.s9.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  44  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14355164--14355188	7	3.6	7	100	0	50	16	0	52	32	1.44
14355284--14355321	13	2.8	13	81	18	51	13	0	47	39	1.42
14355232--14355375	74	1.9	76	85	2	202	28	1	26	43	1.63
14355363--14355387	7	3.6	7	100	0	50	16	0	52	32	1.44
14355483--14355520	13	2.8	13	81	18	51	13	0	47	39	1.42
14355431--14355574	74	1.9	76	85	2	202	28	1	26	43	1.63
14355562--14355586	7	3.6	7	100	0	50	16	0	52	32	1.44
14355682--14355719	13	2.8	13	81	18	51	13	0	47	39	1.42
14355630--14355773	74	1.9	76	85	2	202	28	1	26	43	1.63
14355761--14355785	7	3.6	7	100	0	50	16	0	52	32	1.44
14355881--14355918	13	2.8	13	81	18	51	13	0	47	39	1.42
14355829--14355972	74	1.9	76	85	2	202	28	1	26	43	1.63
14355960--14355984	7	3.6	7	100	0	50	16	0	52	32	1.44
14356080--14356117	13	2.8	13	81	18	51	13	0	47	39	1.42
14356651--14356963	43	7.4	42	87	2	421	19	19	32	28	1.96
14356651--14356963	85	3.7	85	84	3	416	19	19	32	28	1.96
14358059--14358272	106	2.0	107	99	0	421	45	7	10	36	1.66
14361617--14361676	26	2.3	26	82	5	68	18	41	23	16	1.90
14361726--14361787	30	2.1	30	100	0	124	24	40	12	22	1.89
14369625--14369687	27	2.3	27	80	0	72	38	15	26	19	1.92
14371306--14371807	250	2.0	250	95	0	907	30	12	17	39	1.87
14371845--14371884	21	1.9	21	94	0	71	37	10	15	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14377557--14378015	230	2.0	230	91	0	747	32	15	22	29	1.94
14380316--14380421	33	3.2	33	87	1	104	39	33	9	16	1.81
14381346--14381387	21	2.0	21	86	9	59	23	9	7	59	1.53
14397540--14397811	142	1.9	142	96	0	499	26	40	20	13	1.89
14398009--14398043	18	1.9	18	88	11	54	8	8	0	82	0.83
14398774--14398834	18	3.3	18	77	8	68	37	9	1	50	1.45
14398747--14398805	29	2.1	29	84	9	77	37	5	3	54	1.39
14398778--14398839	20	3.2	20	81	6	74	38	9	1	50	1.45
14406372--14406406	18	1.9	18	88	11	54	8	8	0	82	0.83
14407137--14407197	18	3.3	18	77	8	68	37	9	1	50	1.45
14407111--14407168	28	2.1	27	84	9	73	36	5	3	55	1.39
14407141--14407202	20	3.2	20	81	6	74	38	9	1	50	1.45
14411059--14411083	11	2.3	11	100	0	50	44	0	0	56	0.99
14411127--14411179	15	3.7	15	76	16	58	50	0	3	45	1.19
14419975--14420042	34	2.0	34	83	11	86	22	27	22	27	1.99
14425781--14425852	25	2.9	25	82	0	90	26	25	20	27	1.99
14429370--14429426	5	11.2	5	77	3	60	24	38	0	36	1.56
14429370--14429420	15	3.4	15	88	0	84	25	37	0	37	1.56
14430479--14430662	51	3.6	51	77	2	208	29	27	13	29	1.94
14430479--14430663	102	1.8	102	97	0	352	29	27	13	29	1.94
14432437--14432463	13	2.1	13	100	0	54	40	14	22	22	1.90
14432765--14432800	18	1.9	19	88	5	56	33	22	0	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14434388--14434445	5	11.6	5	81	0	71	24	32	0	43	1.55
14434388--14434449	20	3.1	20	83	4	81	24	32	0	43	1.54
14435354--14435793	51	8.7	51	90	4	574	27	26	13	32	1.94
14440884--14440922	18	2.2	17	86	13	53	33	0	20	46	1.51
14441148--14441246	23	4.3	23	88	3	146	23	22	25	29	1.99
14441148--14441246	46	2.2	46	94	0	171	23	22	25	29	1.99
14454114--14454158	3	15.0	3	100	0	90	66	0	0	33	0.92
14455219--14455249	9	3.4	9	90	0	53	38	22	12	25	1.90
14455680--14455717	17	2.2	17	86	9	51	42	0	2	55	1.14
14456772--14456826	21	2.7	20	74	20	51	72	1	0	25	0.94
14457288--14457535	123	2.0	124	99	0	489	31	8	4	54	1.52
14471354--14471404	25	2.0	25	100	0	102	31	15	27	25	1.96
14471450--14471489	20	2.0	20	85	0	53	22	17	2	57	1.52
14471835--14471873	19	2.2	18	90	9	62	64	0	20	15	1.30
14473929--14474807	439	2.0	440	99	0	1751	34	12	10	42	1.77
14480340--14480433	26	3.6	26	98	0	179	22	23	30	23	1.99
14483466--14483524	25	2.4	25	85	0	73	20	27	27	25	1.99
14486108--14486151	23	2.0	22	86	4	61	56	15	0	27	1.40
14487533--14487611	25	3.2	25	75	13	99	35	20	22	21	1.96
14490862--14491194	43	7.8	43	81	3	388	31	25	18	25	1.97
14492525--14492550	2	13.0	2	100	0	52	50	0	0	50	1.00
14496925--14497000	40	1.9	40	86	5	109	34	22	22	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14496965--14497224	83	3.1	83	80	4	242	29	27	22	20	1.99
14496924--14497248	41	7.9	41	78	6	327	30	26	21	21	1.98
14503013--14503177	41	4.0	41	92	1	285	23	28	20	27	1.99
14503013--14503177	83	2.0	82	95	1	294	23	28	20	27	1.99
14503968--14504018	21	2.4	22	77	9	61	43	11	1	43	1.52
14506306--14506494	45	4.2	44	81	5	186	34	26	17	20	1.95
14506318--14506491	90	1.9	89	82	5	217	35	28	15	20	1.93
14513595--14513635	21	2.0	21	85	0	55	31	7	36	24	1.83
14525526--14525587	25	2.5	25	86	0	79	22	24	24	29	1.99
14529102--14529157	18	3.4	18	68	31	54	41	0	17	41	1.50
14529103--14529154	16	3.4	16	71	17	56	40	0	17	42	1.49
14529454--14529518	20	3.3	20	77	14	73	53	0	16	29	1.43
14529481--14529527	20	2.3	20	88	0	67	48	2	19	29	1.60
14532889--14533061	50	3.5	49	78	2	168	20	26	23	28	1.99
14537268--14537307	21	1.9	21	84	0	53	37	0	20	42	1.52
14537771--14537821	26	2.0	26	92	0	84	19	21	21	37	1.95
14537761--14537962	73	2.7	73	73	11	185	19	24	20	35	1.96
14538826--14538864	17	2.5	15	80	15	51	51	2	30	15	1.57
14538831--14538870	17	2.4	17	95	0	71	50	2	30	17	1.59
14541327--14541356	14	2.1	14	93	0	51	76	3	20	0	0.92
14541669--14541835	78	2.1	78	92	0	280	38	4	19	37	1.71
14547079--14547276	96	2.1	97	99	0	389	23	22	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14558749--14558774	6	4.3	6	100	0	52	0	30	0	69	0.89
14574236--14574464	40	5.7	40	86	0	287	36	16	26	21	1.94
14574236--14574468	80	2.9	80	84	0	322	36	16	26	21	1.94
14574227--14574466	120	2.0	120	85	0	327	37	16	25	20	1.93
14581534--14581581	20	2.4	20	92	0	78	29	25	12	33	1.92
14583929--14584191	129	2.0	129	99	0	517	39	12	17	30	1.86
14584244--14584272	13	2.1	14	93	6	51	72	0	20	6	1.07
14584260--14584371	36	3.1	36	96	0	206	58	2	25	14	1.50
14584301--14584359	18	3.3	18	64	17	50	54	3	28	13	1.55
14588743--14588774	14	2.4	14	90	10	50	12	0	15	71	1.14
14589023--14589063	20	2.0	20	100	0	82	34	0	29	36	1.58
14590545--14590590	23	2.0	23	91	0	74	17	13	26	43	1.85
14593834--14593991	27	5.9	27	76	9	135	41	18	8	31	1.81
14594484--14594539	27	2.1	27	89	0	85	17	25	25	32	1.97
14595089--14595127	18	2.1	18	85	4	51	30	7	12	48	1.69
14597152--14597272	27	4.5	27	76	3	118	38	23	7	30	1.82
14597171--14597311	54	2.6	53	80	8	151	39	24	7	29	1.83
14597150--14597298	81	1.8	81	82	2	192	39	21	8	30	1.83
14597803--14597858	27	2.1	27	89	0	85	19	23	23	33	1.97
14608308--14608470	40	4.1	40	85	3	193	16	29	17	36	1.92
14608338--14608400	20	3.2	20	71	8	65	15	33	15	34	1.90
14622313--14622500	51	3.7	50	82	3	189	25	16	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14622363--14622495	50	2.6	51	86	1	169	24	17	25	32	1.97
14629952--14630173	51	4.4	50	76	4	178	27	17	25	29	1.97
14633390--14633436	20	2.3	20	88	3	67	40	23	23	12	1.89
14637311--14637518	32	6.4	32	77	8	126	36	19	20	23	1.95
14637299--14637514	64	3.3	64	77	7	215	36	18	20	23	1.95
14637809--14638067	27	9.7	27	80	3	236	25	19	17	37	1.94
14637809--14638067	80	3.2	79	78	5	261	25	19	17	37	1.94
14637950--14638088	27	5.2	27	83	3	129	20	20	20	38	1.94
14637808--14638042	107	2.2	107	80	3	267	25	19	17	37	1.93
14643085--14643139	27	2.0	27	89	0	83	36	23	21	18	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131