genome.fa.s9.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  80  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26829458--26829489	17	1.9	17	93	6	57	56	6	21	15	1.62
26831598--26831773	46	3.8	46	74	0	154	28	22	19	28	1.98
26832639--26832670	16	1.9	17	93	6	57	25	9	0	65	1.22
26834268--26834323	13	4.5	13	78	13	73	50	14	0	35	1.43
26841622--26842102	27	17.8	27	82	4	497	44	21	17	16	1.87
26842291--26842345	26	2.1	26	93	0	92	18	21	21	38	1.94
26842445--26842512	28	2.5	28	85	2	84	25	26	20	27	1.99
26860020--26860140	50	2.4	50	81	0	143	20	30	22	26	1.98
26860530--26860587	30	1.9	30	82	0	71	29	22	10	37	1.87
26863117--26863178	26	2.4	26	91	0	97	35	12	12	38	1.82
26871735--26872111	189	2.0	188	93	0	646	46	11	18	23	1.81
26873969--26874327	178	2.0	178	98	0	700	36	18	9	35	1.84
26877319--26877349	2	15.0	2	93	6	53	48	3	0	48	1.17
26888403--26888462	25	2.4	25	81	10	77	23	18	21	36	1.95
26891607--26891753	43	3.4	43	80	12	185	32	16	22	28	1.95
26899186--26899329	43	3.4	43	81	9	186	33	16	22	27	1.95
26899186--26899348	43	3.9	42	81	6	177	31	15	22	30	1.95
26904507--26904563	16	3.4	16	67	9	51	15	7	8	68	1.37
26904504--26904570	34	2.0	34	100	0	134	14	10	11	62	1.54
26905128--26905194	29	2.4	28	87	5	98	34	5	10	49	1.62
26905144--26905190	14	3.3	14	76	5	58	34	4	10	51	1.56
26905889--26905937	16	2.9	17	81	9	55	48	0	8	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26907044--26907156	53	2.1	53	80	3	120	25	8	40	24	1.84
26930721--26930782	30	2.0	31	93	3	108	24	22	27	25	2.00
26931098--26931159	27	2.3	26	91	2	97	24	16	22	37	1.94
26931111--26931306	27	7.3	27	89	1	270	19	19	17	43	1.88
26940234--26940273	21	2.0	21	90	5	64	42	15	7	35	1.75
26941369--26941408	15	2.7	15	84	3	55	67	0	30	2	1.04
26948369--26948634	137	1.9	138	84	5	360	34	25	18	21	1.95
26952724--26952753	13	2.4	12	89	10	51	80	0	20	0	0.72
26958554--26958595	19	2.0	22	86	13	63	35	2	9	52	1.47
26966873--26966925	26	2.0	26	100	0	106	11	7	30	50	1.65
26970741--26970773	7	4.7	7	100	0	66	30	0	24	45	1.53
26979383--26979502	41	2.9	41	83	4	127	35	15	25	22	1.94
26979412--26979478	21	3.2	21	72	4	64	31	13	29	25	1.94
26979433--26979499	20	3.3	20	68	4	62	35	14	29	19	1.92
26979428--26979492	21	3.1	21	71	4	69	36	15	24	23	1.93
26981470--26981542	27	2.7	27	80	4	85	32	16	15	35	1.90
26987499--26987639	57	2.4	60	81	8	146	31	6	9	51	1.60
26987838--26987873	18	1.9	19	88	5	56	36	0	5	58	1.22
26987722--26987948	98	2.3	98	84	4	287	33	3	13	49	1.58
26988110--26988148	17	2.3	17	86	8	53	30	5	10	53	1.56
26990884--26991179	154	1.9	154	85	0	412	25	10	27	37	1.88
26994777--26994813	9	4.1	9	85	0	56	45	10	10	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26995698--26995728	5	6.2	5	92	0	53	22	16	19	41	1.89
26996142--26996225	20	4.3	19	74	8	62	48	11	9	29	1.71
26996142--26996225	39	2.1	40	84	2	107	48	11	9	29	1.71
27000433--27000490	25	2.3	25	88	5	82	20	24	18	36	1.95
27000444--27000513	25	2.8	25	84	0	77	22	21	22	32	1.98
27007283--27007345	20	3.2	19	77	8	63	46	15	6	31	1.71
27007283--27007370	40	2.2	40	84	8	108	46	14	6	31	1.71
27017201--27017293	33	2.8	33	83	0	123	26	18	19	35	1.95
27044071--27044125	26	2.1	26	82	0	65	25	23	27	23	2.00
27044544--27044630	26	3.3	26	85	0	129	28	10	19	41	1.84
27051325--27051376	27	1.9	27	88	0	77	32	21	25	21	1.98
27051556--27051696	26	5.4	26	84	0	174	22	15	20	41	1.90
27051556--27051696	52	2.7	52	85	3	194	22	15	20	41	1.90
27057524--27057642	25	4.9	24	83	11	152	52	4	25	18	1.63
27057524--27057642	49	2.4	49	92	0	202	52	4	25	18	1.63
27059276--27059455	51	3.6	50	84	3	209	30	28	16	25	1.96
27060906--27061089	51	3.6	51	83	4	185	27	15	26	31	1.95
27064201--27064287	42	2.0	43	97	2	167	26	26	11	35	1.90
27072072--27072264	51	3.8	49	82	4	215	29	26	16	26	1.97
27077803--27077849	12	4.0	11	86	10	58	51	0	10	38	1.37
27078630--27078747	45	2.6	44	80	6	121	50	9	19	21	1.75
27080235--27080500	132	2.0	133	99	0	525	42	21	12	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27096743--27096968	112	2.0	112	96	1	418	37	9	10	42	1.71
27098652--27098696	23	2.0	22	83	12	56	57	26	2	13	1.48
27102012--27102060	21	2.4	21	86	6	66	4	18	4	73	1.15
27106457--27106604	73	2.0	73	100	0	296	41	10	5	42	1.63
27106470--27106584	35	3.2	35	64	24	94	42	10	4	42	1.59
27110298--27110330	17	1.9	17	93	0	57	60	12	3	24	1.46
27110540--27110585	18	2.6	18	80	13	58	63	4	4	28	1.33
27110527--27110623	6	16.2	6	70	16	51	63	5	4	26	1.33
27110571--27110623	21	2.5	21	78	6	63	62	5	3	28	1.35
27112064--27112187	44	2.8	43	85	7	160	26	22	23	27	2.00
27112108--27113465	143	9.5	143	87	1	1833	27	22	18	30	1.97
27112413--27112756	44	7.3	44	63	17	122	27	22	20	29	1.98
27112651--27113330	44	14.4	45	63	16	137	27	21	19	31	1.97
27115719--27115763	23	2.0	23	82	8	56	6	17	0	75	1.01
27119249--27119281	17	1.9	17	93	0	57	60	12	3	24	1.46
27119384--27119442	27	2.2	27	87	0	82	57	1	6	33	1.35
27119844--27119877	16	2.1	17	88	5	52	52	0	2	44	1.16
27120015--27120060	23	2.0	23	83	8	58	63	6	4	26	1.38
27120039--27120077	18	2.1	18	85	4	51	64	5	5	25	1.35
27123917--27123944	2	14.0	2	100	0	56	50	0	0	50	1.00
27124202--27124239	3	12.7	3	94	0	67	2	31	0	65	1.06
27124513--27124558	7	6.3	7	81	18	58	65	4	0	30	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27125206--27125355	74	2.0	75	97	1	284	40	2	8	48	1.46
27127454--27127486	2	16.5	2	100	0	66	48	0	51	0	1.00
27128453--27128479	3	9.0	3	100	0	54	66	0	33	0	0.92
27136639--27136737	23	4.3	24	79	6	98	27	21	22	29	1.99
27136639--27136734	46	2.1	46	90	0	147	27	21	21	29	1.99
27146355--27146412	25	2.3	25	77	11	64	32	22	17	27	1.96
27146392--27146451	25	2.4	25	80	2	75	38	11	25	25	1.89
27146774--27146816	18	2.4	18	88	0	59	34	13	11	39	1.82
27148075--27148137	18	3.5	18	77	16	60	28	4	6	60	1.42
27148156--27148215	25	2.4	25	73	13	70	13	6	6	73	1.24
27148155--27148221	6	10.7	6	79	6	53	13	5	5	74	1.19
27148202--27148270	26	2.7	26	75	20	65	20	11	2	65	1.38
27151506--27151683	43	4.1	43	84	4	189	24	30	16	28	1.97
27151506--27151683	86	2.1	86	82	4	216	24	30	16	28	1.97
27152059--27152135	21	3.7	21	83	0	100	5	41	15	37	1.70
27152059--27152150	21	4.4	21	82	5	96	5	40	16	38	1.71
27152121--27152290	66	2.6	66	83	3	191	12	28	18	40	1.88
27164946--27165175	83	2.8	83	73	13	211	36	17	16	29	1.92
27165373--27165589	83	2.6	83	75	9	201	35	18	16	29	1.92
27164915--27165799	427	2.1	428	96	0	1628	32	18	16	31	1.94
27166293--27166340	21	2.3	21	82	10	62	35	41	0	22	1.54
27167240--27167483	41	5.9	41	83	5	255	31	29	18	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27167240--27167483	83	3.0	81	85	7	280	31	29	18	20	1.97
27167517--27167710	39	4.9	39	91	1	271	21	19	19	40	1.92
27168204--27168304	26	3.9	26	90	0	157	31	20	26	20	1.98
27168472--27168662	27	7.0	27	79	10	169	23	16	18	42	1.89
27168477--27168668	55	3.5	53	79	9	208	22	16	18	42	1.88
27184246--27184287	19	2.2	19	86	0	57	80	2	2	14	0.90
27184223--27184286	25	2.6	25	74	0	65	76	1	4	17	1.03
27192818--27192842	13	1.9	13	100	0	50	24	24	16	36	1.94
27194777--27195152	82	4.6	81	81	5	386	22	17	17	42	1.89
27194777--27195147	109	3.4	107	84	5	410	22	16	17	42	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131