genome.fa.s9.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  112  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37413688--37413747	30	2.0	30	96	0	111	25	3	15	56	1.54
37418684--37418724	16	2.7	15	88	7	57	70	0	4	24	1.06
37420476--37420513	18	2.1	19	85	14	53	81	7	2	7	0.96
37420476--37420514	19	2.1	19	85	9	53	82	7	2	7	0.94
37420678--37420713	10	3.5	10	88	3	54	72	0	27	0	0.85
37420869--37421003	42	3.2	40	76	11	128	32	4	12	50	1.60
37424476--37424513	12	3.2	12	92	0	67	0	26	44	28	1.54
37427179--37427357	10	18.0	10	68	14	93	0	31	0	68	0.90
37427208--37427368	24	6.2	25	69	18	89	0	32	0	67	0.91
37427179--37427358	38	4.7	38	85	10	215	0	31	0	68	0.90
37427420--37427488	27	2.6	27	86	4	95	18	28	34	17	1.94
37427525--37427558	17	1.9	18	88	5	52	8	2	2	85	0.80
37437207--37437236	6	5.0	6	95	0	51	20	16	50	13	1.78
37438891--37438932	18	2.5	18	81	11	54	33	0	4	61	1.17
37439773--37440080	166	1.9	165	89	2	478	35	8	9	47	1.66
37441675--37441719	16	2.4	20	75	24	53	53	8	20	17	1.70
37451690--37452011	45	7.2	45	88	3	436	22	17	26	34	1.96
37452112--37452184	38	1.9	37	86	8	103	47	1	19	31	1.58
37453621--37453673	22	2.5	22	77	17	58	39	3	15	41	1.65
37454368--37454430	25	2.5	25	86	0	90	50	15	9	23	1.73
37455109--37455140	16	2.1	15	94	5	55	84	0	3	12	0.74
37461362--37461398	17	2.1	18	85	14	51	24	2	2	70	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37464774--37465013	69	3.5	69	76	5	218	39	21	20	19	1.93
37471906--37472004	19	5.1	19	89	4	153	36	15	10	38	1.81
37471883--37471998	40	2.8	40	85	7	146	38	13	9	37	1.78
37472855--37472929	23	3.3	23	90	0	105	34	14	24	26	1.94
37473824--37473917	49	1.9	49	86	0	134	22	25	9	42	1.83
37477029--37477100	27	2.7	27	77	0	81	26	30	31	11	1.91
37477278--37477306	3	10.0	3	92	7	51	0	34	0	65	0.93
37478344--37478456	19	5.8	19	87	4	172	37	8	15	38	1.78
37478345--37478456	40	2.8	40	94	2	192	37	8	14	39	1.77
37478344--37478463	59	2.1	56	90	6	188	37	8	15	39	1.77
37481179--37481217	21	1.9	20	84	5	51	33	5	2	58	1.33
37482518--37482547	15	2.0	15	93	0	51	33	3	0	63	1.11
37496533--37496596	30	2.1	31	88	2	94	23	15	12	48	1.79
37502329--37502361	5	6.4	5	93	6	57	60	0	39	0	0.97
37502329--37502365	16	2.3	16	95	0	65	59	0	40	0	0.97
37505793--37505841	20	2.4	20	86	3	62	67	2	2	28	1.13
37505906--37505964	25	2.3	25	82	8	66	30	5	1	62	1.26
37515429--37515487	25	2.3	25	82	8	66	30	5	1	62	1.26
37520348--37520387	20	2.0	20	85	4	55	67	2	5	25	1.23
37520734--37520778	21	2.0	24	87	12	69	31	2	0	66	1.04
37529838--37529877	18	2.2	18	90	0	62	37	12	5	45	1.64
37538320--37538381	31	1.9	31	87	6	88	64	0	1	33	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37542908--37542935	13	2.2	13	100	0	56	42	7	0	50	1.30
37546674--37546773	49	2.0	50	84	1	130	26	7	29	38	1.82
37546873--37546902	15	2.0	15	93	0	51	40	16	6	36	1.75
37554179--37554209	9	3.4	9	90	0	53	25	12	22	38	1.90
37554263--37554299	9	4.1	9	92	0	65	45	13	10	29	1.77
37555133--37555158	5	5.2	5	100	0	52	19	19	19	42	1.90
37555873--37555950	33	2.4	33	79	12	88	29	23	14	33	1.93
37555871--37556086	101	2.1	101	87	0	315	29	25	14	29	1.95
37558669--37558709	4	10.2	4	89	10	66	24	0	0	75	0.80
37562628--37562675	23	2.0	25	84	12	64	39	0	2	58	1.10
37568093--37568166	25	2.9	26	89	2	62	12	24	22	40	1.88
37568104--37568166	25	2.5	25	100	0	126	12	22	23	41	1.88
37568259--37568372	24	4.6	24	69	12	63	18	26	19	35	1.95
37572599--37572639	21	2.0	21	85	0	55	46	21	17	14	1.84
37572628--37572685	21	2.8	21	75	0	71	37	18	25	17	1.93
37572608--37572729	42	2.9	41	84	4	138	44	18	21	15	1.87
37573701--37573766	33	2.0	33	100	0	132	15	27	6	51	1.66
37594541--37594602	31	2.0	31	100	0	124	22	6	22	48	1.73
37596471--37596749	77	3.6	77	100	0	558	41	7	9	41	1.65
37600303--37600352	3	16.7	3	100	0	100	68	0	0	32	0.90
37601527--37601645	62	1.9	62	92	0	202	26	24	25	23	2.00
37601525--37601689	62	2.7	61	82	7	174	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37608100--37608248	73	2.0	73	93	0	253	34	14	16	34	1.89
37608514--37608555	20	2.1	20	90	0	66	45	0	14	40	1.45
37614235--37614276	22	1.9	22	85	0	57	40	0	28	30	1.57
37615221--37615254	18	2.0	18	88	11	54	70	5	0	23	1.09
37615398--37615439	19	2.1	21	82	8	52	38	0	4	57	1.20
37616214--37616259	20	2.3	21	81	11	60	17	2	41	39	1.62
37616261--37616324	28	2.2	29	88	2	94	35	0	21	42	1.54
37619483--37619513	7	4.4	7	95	0	53	58	12	3	25	1.50
37627170--37627195	12	2.2	12	100	0	52	50	26	7	15	1.71
37628611--37628667	30	1.9	30	82	3	71	64	14	3	17	1.41
37639779--37639862	32	2.7	31	79	13	93	46	3	2	47	1.32
37639765--37639863	37	2.8	36	74	14	98	44	3	3	49	1.33
37644797--37644845	22	2.2	23	79	20	59	28	28	2	40	1.68
37644805--37644904	51	2.0	51	84	4	130	25	26	3	46	1.67
37645569--37645606	20	2.0	20	89	5	60	34	2	7	55	1.43
37651005--37651181	98	1.8	98	88	2	275	29	19	17	33	1.95
37651104--37651968	44	19.8	42	70	13	383	28	22	17	30	1.97
37651231--37651622	175	2.2	175	96	0	712	29	22	16	30	1.96
37651231--37651994	87	8.8	88	71	9	370	28	22	17	30	1.97
37651406--37651994	218	2.7	218	89	1	914	28	22	17	30	1.97
37652010--37652583	86	6.6	86	86	3	654	23	23	22	30	1.99
37652010--37652583	173	3.3	172	82	3	690	23	23	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37653958--37653999	6	6.7	6	91	2	57	11	14	0	73	1.09
37653957--37654000	7	6.7	7	85	15	67	11	13	0	75	1.06
37653949--37653993	14	3.4	13	85	14	65	13	13	0	73	1.10
37653951--37654000	25	1.9	27	92	8	86	12	14	0	74	1.09
37654110--37654409	150	2.0	150	96	1	548	22	22	19	36	1.95
37658329--37658876	109	5.0	109	86	2	702	36	17	15	30	1.91
37658361--37658876	224	2.3	218	88	2	746	36	18	14	30	1.91
37659011--37659070	4	15.0	4	74	6	50	70	5	3	21	1.22
37659444--37659478	3	11.7	3	87	0	52	60	0	5	34	1.21
37659447--37659478	12	2.7	12	100	0	64	59	0	6	34	1.23
37660427--37661653	22	56.7	21	74	11	728	47	25	0	26	1.58
37660427--37661653	44	28.3	44	76	9	967	47	25	0	26	1.58
37660473--37660575	52	2.0	52	86	0	143	49	25	0	25	1.50
37660484--37660553	30	2.3	29	85	4	86	50	28	0	21	1.49
37661068--37661249	52	3.4	53	73	15	174	50	24	0	24	1.49
37661107--37661154	16	3.1	16	82	11	57	54	22	0	22	1.45
37661100--37661154	15	3.7	15	80	7	58	52	23	0	23	1.47
37661188--37661653	43	11.0	42	72	13	298	45	26	1	26	1.63
37661180--37661300	59	2.1	59	82	3	145	49	24	0	24	1.56
37661436--37661475	16	2.6	15	84	7	53	45	30	2	22	1.66
37661600--37661655	21	2.3	26	68	28	68	50	25	0	25	1.50
37662570--37662681	21	5.1	21	75	16	93	49	23	0	27	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37662583--37663214	43	14.7	43	70	17	356	48	26	0	25	1.53
37662583--37663214	21	29.5	21	71	17	295	48	26	0	25	1.53
37662588--37662754	22	8.0	20	70	23	78	50	23	0	25	1.49
37662643--37662732	37	2.4	36	81	7	117	52	24	0	23	1.48
37662716--37662783	29	2.4	29	80	7	77	51	29	0	19	1.47
37662898--37662927	15	2.0	15	93	0	51	46	36	0	16	1.47
37663028--37663053	8	3.2	8	100	0	52	53	34	0	11	1.37
37662811--37663154	130	2.7	123	81	11	353	47	26	0	26	1.53
37663452--37663534	21	4.0	21	78	12	82	50	26	0	22	1.49
37663453--37665478	43	46.5	43	74	14	1250	47	26	0	25	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131