genome.fa.s9.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  54  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17767334--17767451	24	4.9	24	77	2	121	25	21	22	30	1.99
17767334--17767438	48	2.2	48	89	0	156	23	19	25	31	1.98
17769737--17769771	15	2.4	14	85	4	52	80	0	0	20	0.72
17774917--17775130	27	7.9	26	79	10	198	43	20	21	15	1.88
17774928--17775100	81	2.1	81	86	2	240	44	18	22	14	1.86
17774928--17775130	81	2.5	80	82	6	223	43	19	22	15	1.88
17775435--17775496	28	2.2	28	88	0	88	24	27	22	25	2.00
17782412--17782757	27	12.9	27	79	2	340	45	21	17	15	1.85
17782945--17782999	26	2.1	26	82	0	65	20	20	21	38	1.94
17783094--17783161	28	2.5	28	90	2	102	25	25	22	27	1.99
17798425--17798468	22	2.1	21	87	8	63	13	29	0	56	1.38
17798672--17798703	15	2.3	15	89	10	50	78	9	12	0	0.97
17799978--17800025	21	2.2	23	92	7	82	43	2	0	54	1.12
17800985--17801784	401	2.0	402	99	0	1575	40	15	4	39	1.66
17802958--17804719	881	2.0	881	100	0	3524	36	15	19	28	1.92
17813330--17813378	18	2.8	17	82	17	57	44	22	0	32	1.53
17814372--17814577	103	2.0	103	91	1	333	37	26	15	20	1.92
17820366--17821013	323	2.0	324	99	0	1289	39	15	17	27	1.89
17832357--17832406	24	2.1	24	100	0	100	30	24	12	34	1.91
17836053--17836214	44	3.7	44	89	1	173	29	24	22	24	1.99
17836190--17836395	44	4.4	43	65	18	110	33	18	20	27	1.96
17836126--17836562	142	3.1	142	93	0	730	32	19	21	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17836410--17836503	44	2.1	44	84	0	116	27	24	23	24	2.00
17837224--17837259	15	2.4	15	90	0	54	69	5	8	16	1.33
17851190--17851304	43	2.7	43	77	0	140	34	17	20	26	1.95
17853940--17853991	22	2.3	23	90	6	88	23	3	19	53	1.61
17854200--17854306	32	3.3	32	90	0	160	33	18	17	29	1.94
17856613--17856646	17	2.0	18	88	11	54	11	11	0	76	1.02
17861302--17861341	19	2.0	19	85	9	53	10	17	0	72	1.11
17861673--17861701	12	2.3	13	94	5	51	79	0	10	10	0.94
17862353--17862396	23	1.9	23	85	0	61	56	2	0	40	1.11
17870842--17871092	125	2.0	126	99	0	495	50	5	3	40	1.41
17875981--17876062	32	2.6	32	84	3	105	29	23	13	34	1.93
17880685--17880742	29	2.0	30	89	3	91	58	3	6	31	1.41
17886754--17886885	61	2.2	58	86	5	185	40	3	3	51	1.38
17886754--17886906	58	2.6	59	82	10	186	40	3	5	50	1.43
17890641--17890676	18	2.0	18	88	0	54	44	2	30	22	1.67
17891355--17891541	94	2.0	95	97	2	358	35	4	3	56	1.37
17895754--17895825	37	1.9	37	97	0	135	13	12	18	55	1.69
17906737--17906786	10	4.8	10	83	9	55	36	0	4	60	1.16
17906911--17906955	21	2.1	22	83	4	56	37	4	0	57	1.19
17907765--17907851	44	2.0	44	97	0	165	37	5	13	42	1.69
17908310--17908344	15	2.3	15	100	0	70	54	0	11	34	1.37
17920641--17920907	27	9.9	27	76	8	242	41	12	23	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17921928--17921993	28	2.6	24	78	17	78	65	3	16	15	1.40
17921937--17921996	28	2.1	28	100	0	120	66	3	16	13	1.37
17926178--17926273	50	1.9	49	91	2	156	44	7	22	25	1.78
17927190--17927321	65	2.0	65	95	0	237	29	9	26	34	1.89
17927375--17927775	200	2.0	201	99	0	786	28	7	27	36	1.84
17930132--17930205	22	3.4	22	78	14	98	44	14	21	18	1.86
17931806--17931889	27	3.1	27	85	0	96	25	16	30	27	1.97
17931837--17931981	27	5.3	29	69	14	71	31	13	26	28	1.94
17932892--17932949	19	2.7	22	84	10	68	36	8	17	37	1.80
17934404--17934455	26	2.0	26	100	0	104	26	11	23	38	1.89
17934586--17934621	3	12.0	3	100	0	72	33	0	0	66	0.92
17939740--17940401	88	7.5	88	84	1	680	27	20	23	28	1.99
17944232--17944316	44	1.9	44	90	0	134	30	16	24	28	1.96
17944258--17944735	132	3.6	132	87	2	690	30	20	24	24	1.99
17944763--17944862	51	2.0	51	83	0	128	27	13	27	33	1.93
17944874--17944973	51	2.0	51	87	0	146	30	14	24	32	1.94
17944900--17945045	72	2.0	72	84	2	186	34	14	26	25	1.94
17945129--17945229	51	2.0	51	84	0	130	33	16	19	29	1.94
17944731--17945352	260	2.4	260	86	1	852	31	16	23	27	1.96
17945232--17945356	51	2.5	51	81	2	135	33	15	25	25	1.95
17944902--17945474	123	4.6	123	77	7	567	32	16	24	26	1.96
17945910--17946307	94	4.3	94	79	8	447	31	17	19	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17945860--17946249	44	8.6	43	67	18	125	31	16	18	32	1.94
17946442--17946509	27	2.5	28	92	2	111	33	16	36	13	1.87
17948107--17948179	35	2.1	35	87	5	103	35	10	2	50	1.52
17949261--17949301	17	2.4	17	87	0	55	26	9	0	63	1.25
17953695--17955230	141	10.9	141	92	0	2464	26	20	18	33	1.96
17953887--17954966	44	23.1	44	65	20	220	26	21	18	33	1.97
17953692--17955230	424	3.6	424	92	0	2490	26	20	18	33	1.96
17953702--17955230	565	2.7	565	92	1	2517	26	20	18	33	1.96
17955587--17955857	87	3.1	86	86	2	382	22	25	23	28	1.99
17957052--17957090	21	1.9	20	89	5	60	15	15	0	69	1.20
17957050--17957099	20	2.4	21	80	9	59	14	20	0	66	1.26
17957521--17957560	6	6.7	6	91	0	62	15	0	12	72	1.12
17957521--17957567	18	2.7	18	86	3	69	14	0	12	72	1.13
17963820--17963848	12	2.3	13	94	5	51	27	0	0	72	0.85
17966287--17966711	212	2.0	213	99	0	843	32	17	15	34	1.92
17968498--17968535	20	1.9	20	88	0	58	47	5	5	42	1.48
17969206--17969257	24	2.2	24	82	0	59	34	7	7	50	1.60
17973487--17973556	25	2.8	25	82	0	86	24	21	24	30	1.99
17982485--17982513	15	1.9	15	100	0	58	34	3	34	27	1.74
17990210--17990318	52	2.1	52	85	0	146	44	12	22	20	1.85
17990636--17990694	28	2.2	26	84	6	73	42	3	1	52	1.28
17991096--17991134	11	3.5	11	92	0	60	30	41	2	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17992214--17992270	27	2.1	27	83	0	69	12	12	36	38	1.80
18004798--18005069	41	6.7	41	84	3	345	19	20	26	33	1.97
18005488--18005560	29	2.5	29	80	10	87	24	0	36	38	1.56
18005502--18005623	7	16.6	7	70	15	77	22	1	38	37	1.64
18010085--18010403	129	2.5	129	83	2	401	27	16	28	26	1.97
18010085--18010480	43	9.3	43	81	0	364	26	16	28	28	1.97
18021406--18021435	15	2.0	15	100	0	60	26	20	20	33	1.97
18022217--18022263	18	2.6	18	86	10	60	38	0	4	57	1.18
18024090--18024135	3	15.3	3	100	0	92	67	0	0	32	0.91
18024569--18024705	54	2.6	54	82	3	152	26	27	2	43	1.66
18024569--18024724	54	2.9	53	80	8	147	26	28	2	41	1.69
18030489--18030549	26	2.3	27	80	11	81	24	31	21	22	1.98
18030499--18030554	26	2.2	26	90	6	87	25	23	21	30	1.99
18032456--18032501	15	3.4	14	77	19	53	58	13	0	28	1.35
18033078--18033154	26	2.9	26	79	11	75	25	25	18	29	1.98
18033421--18033791	125	3.0	125	87	2	525	37	21	10	30	1.87
18037739--18037769	15	2.1	15	100	0	62	51	6	22	19	1.69
18047246--18047332	25	3.5	25	80	3	104	31	21	26	20	1.98
18047343--18047390	25	1.9	25	86	0	69	29	20	27	22	1.99
18056340--18056378	18	2.2	18	100	0	78	25	5	20	48	1.70
18058154--18058200	21	2.2	21	80	0	58	21	23	38	17	1.93
18059207--18059383	47	3.7	46	80	8	176	27	24	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18060975--18061455	252	1.9	252	82	4	549	38	11	10	39	1.77
18061827--18062013	97	1.9	97	82	3	223	41	8	5	44	1.58
18063863--18063923	21	2.9	22	76	13	58	6	21	40	31	1.78
18072168--18072193	6	4.3	6	100	0	52	50	0	50	0	1.00
18074516--18074586	25	2.8	25	76	6	63	21	11	2	64	1.38
18074712--18074756	22	2.0	22	83	8	56	55	0	2	42	1.12
18077587--18077643	4	14.2	4	100	0	114	50	24	0	24	1.49
18083118--18083194	40	1.9	40	91	0	127	22	25	28	23	1.99
18083125--18083216	40	2.3	40	81	3	96	22	28	28	20	1.99
18083285--18083322	9	4.2	9	89	0	58	15	0	26	57	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131