genome.fa.s9.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  30  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9731134--9731186	4	13.5	4	96	4	99	26	0	24	49	1.51
9731134--9731186	23	2.3	23	96	3	79	26	0	24	49	1.51
9731237--9732049	109	7.5	109	81	8	844	26	1	14	58	1.46
9731237--9732043	219	3.7	216	83	6	933	26	1	14	57	1.46
9732150--9732268	49	2.4	49	95	1	211	13	11	12	62	1.56
9733987--9734067	33	2.5	33	81	4	92	19	44	8	27	1.80
9734267--9734345	29	2.6	31	78	15	76	37	8	18	34	1.82
9737984--9738032	25	1.9	26	84	12	66	59	10	2	28	1.41
9738117--9738142	6	4.3	6	100	0	52	80	0	0	19	0.71
9742337--9742378	21	2.0	21	85	0	57	40	7	2	50	1.43
9748277--9748407	19	6.6	19	69	17	79	55	14	0	29	1.45
9748251--9748303	27	2.0	27	96	0	97	54	15	0	30	1.41
9748343--9748407	19	3.3	20	81	8	80	53	15	1	29	1.51
9754874--9754939	3	22.0	3	96	0	123	65	0	1	33	1.02
9754938--9754996	3	19.7	3	96	0	109	32	32	0	35	1.58
9755167--9755213	13	3.3	14	85	8	60	46	2	10	40	1.50
9755167--9755196	16	1.9	16	93	6	53	46	3	10	40	1.54
9761669--9761804	67	2.0	67	81	8	161	60	1	5	32	1.30
9763488--9763693	89	2.3	89	77	8	204	27	22	19	30	1.98
9763747--9764317	50	11.4	48	70	7	327	24	21	21	32	1.98
9763825--9764317	150	3.3	150	78	2	400	24	20	22	32	1.98
9763777--9764158	200	1.9	200	87	1	559	23	19	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9763777--9764202	100	4.3	100	84	0	492	23	20	23	31	1.98
9764389--9764627	87	2.7	87	88	0	352	25	24	20	29	1.99
9768920--9768994	25	2.8	26	78	11	82	58	1	8	32	1.35
9786926--9786963	17	2.2	17	86	9	51	55	21	0	23	1.44
9793692--9793725	17	2.1	16	94	5	59	41	8	0	50	1.34
9794669--9794720	26	2.0	26	81	7	61	69	13	5	11	1.35
9797283--9797319	2	18.5	2	94	0	65	54	0	0	45	1.00
9808708--9808750	15	2.8	15	89	3	68	83	0	13	2	0.74
9809641--9809691	14	3.8	13	87	10	50	86	0	11	1	0.66
9809680--9809720	14	2.9	14	88	0	64	65	0	21	12	1.25
9809680--9809712	7	4.7	7	92	0	57	63	0	24	12	1.28
9809641--9809684	7	6.4	7	97	2	81	88	0	11	0	0.51
9809646--9809719	21	3.6	20	81	5	85	77	0	17	5	0.96
9810829--9811541	44	16.4	44	71	9	390	28	19	24	27	1.98
9810916--9811377	173	2.7	170	82	5	473	29	18	24	28	1.98
9810872--9811545	217	3.1	217	81	4	686	28	19	24	27	1.98
9811046--9811403	173	2.1	173	89	3	542	28	18	23	29	1.98
9810862--9811831	391	2.5	381	82	8	1047	28	19	24	27	1.98
9811789--9812063	89	3.1	88	85	1	343	28	26	24	21	1.99
9821723--9821758	17	2.1	17	94	0	63	47	0	11	41	1.39
9825551--9825704	41	3.8	41	88	4	222	33	15	29	21	1.94
9832890--9833043	41	3.8	41	80	9	172	31	14	31	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9832890--9833041	82	1.9	82	86	5	218	30	14	32	22	1.94
9840379--9840421	21	2.2	20	87	8	61	25	18	37	18	1.94
9847463--9847495	17	2.0	17	88	5	50	66	6	6	21	1.35
9852871--9852912	5	8.4	5	79	10	50	23	0	0	76	0.79
9852870--9852912	15	2.9	15	82	10	61	23	0	0	76	0.78
9852883--9852932	20	2.5	20	83	9	57	22	6	2	70	1.20
9854091--9854117	7	3.9	7	100	0	54	88	0	11	0	0.50
9858535--9858646	24	4.7	24	66	8	75	41	25	16	15	1.88
9858504--9858647	72	2.0	72	100	0	288	38	25	18	18	1.92
9868719--9868785	20	3.4	20	81	6	75	55	0	25	19	1.43
9871735--9871764	11	2.7	11	94	0	51	46	3	0	50	1.18
9872994--9873053	7	8.6	7	98	0	111	75	0	0	25	0.81
9872812--9873019	109	1.9	109	98	0	407	42	12	11	34	1.77
9876990--9877019	11	2.7	11	94	0	51	46	3	0	50	1.18
9878140--9878232	7	13.7	7	91	7	124	76	0	1	22	0.85
9879602--9879644	21	2.0	21	90	0	68	23	20	6	48	1.73
9885026--9885114	21	4.1	21	84	5	90	53	10	23	12	1.68
9885026--9885094	21	3.3	21	87	2	95	55	8	24	11	1.64
9894546--9895126	100	5.8	100	86	3	778	23	20	24	32	1.98
9894533--9895132	50	12.0	50	71	5	453	23	20	23	32	1.98
9903291--9903540	125	2.0	125	100	0	500	24	16	28	30	1.97
9904691--9904724	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9905792--9906288	50	10.0	50	73	1	370	23	21	24	31	1.98
9905779--9906280	100	5.0	100	87	2	697	23	21	24	30	1.99
9907733--9908053	159	2.0	159	100	0	642	34	16	27	21	1.95
9917205--9917565	180	2.0	181	95	0	652	42	14	11	31	1.81
9918286--9918336	24	2.1	24	92	0	84	23	25	5	45	1.75
9919330--9919354	5	5.0	5	100	0	50	20	0	0	80	0.72
9919505--9919536	17	1.9	17	93	6	57	9	15	12	62	1.54
9924484--9924526	19	2.3	19	84	8	52	37	9	25	27	1.87
9941801--9941834	13	2.6	13	95	0	59	47	26	14	11	1.79
9941947--9942037	41	2.2	40	79	9	94	24	17	27	30	1.97
9942051--9942176	40	3.1	40	77	7	130	23	22	24	29	1.99
9942657--9942815	67	2.3	70	86	6	218	28	1	25	44	1.62
9942902--9942949	21	2.3	21	85	0	60	27	0	43	29	1.55
9943926--9944006	17	4.6	17	72	20	69	38	3	2	55	1.31
9944993--9945074	42	2.0	42	100	0	164	30	9	14	45	1.77
9945394--9945543	43	3.5	43	80	6	146	23	16	28	31	1.96
9952579--9952741	45	3.6	45	82	4	168	17	19	18	44	1.87
9952709--9952880	45	3.8	45	85	4	240	26	21	17	34	1.95
9952709--9952878	90	1.9	90	91	2	279	26	21	17	34	1.95
9952710--9952921	90	2.4	90	78	4	239	25	20	17	36	1.94
9952868--9952974	46	2.4	45	82	3	133	20	17	17	43	1.88
9958334--9958391	10	5.4	10	74	22	55	74	6	17	1	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9958520--9958572	10	5.0	10	75	20	54	73	7	16	1	1.15
9958338--9958701	181	2.0	182	99	0	721	41	10	18	28	1.85
9959120--9959162	21	2.1	20	82	4	50	39	0	18	41	1.51
9961848--9961961	58	2.0	58	100	0	228	28	18	16	36	1.93
9962755--9962847	44	2.1	46	89	4	145	36	31	4	27	1.76
9962829--9962881	16	3.3	16	91	0	88	24	33	3	37	1.74
9963788--9964620	32	26.0	32	99	0	1657	22	9	3	65	1.36
9966308--9966353	19	2.4	18	82	10	56	21	19	10	47	1.80
9970068--9970109	7	6.0	7	81	18	52	69	0	16	14	1.20
9970068--9970109	21	2.0	21	86	9	59	69	0	16	14	1.20
9971367--9971522	45	3.5	45	66	6	129	30	24	23	21	1.99
9971313--9971521	88	2.4	88	96	0	382	28	28	22	20	1.98
9971325--9971468	43	3.3	43	67	7	128	29	29	25	16	1.97
9971489--9972716	263	4.7	263	87	5	1491	28	20	24	27	1.99
9971509--9972716	131	9.2	132	83	8	1391	28	20	24	27	1.99
9972684--9972783	49	2.0	50	94	3	175	22	18	34	26	1.96
9973510--9973539	10	2.8	11	95	5	53	13	6	0	80	0.91
9974134--9974192	3	19.3	3	79	10	66	35	5	0	59	1.20
9974137--9974192	24	2.3	25	90	3	87	35	5	0	58	1.21
9974297--9974324	2	14.0	2	100	0	56	50	0	0	50	1.00
9975851--9975896	16	2.9	16	90	0	65	32	17	0	50	1.47
9975824--9975996	90	1.9	89	95	1	310	39	17	3	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9975941--9975985	16	2.9	16	83	6	56	33	15	0	51	1.44
9977228--9977274	19	2.5	19	73	13	51	53	2	0	44	1.12
9977378--9977756	192	2.0	188	94	2	661	44	6	9	39	1.63
9978688--9978727	17	2.4	17	86	0	53	65	0	2	32	1.06
9986160--9986214	24	2.3	24	84	6	67	38	29	3	29	1.74
9990772--9990817	6	7.7	6	92	0	65	17	39	0	43	1.49
9990772--9990817	12	3.8	12	94	0	74	17	39	0	43	1.49
9990772--9990817	18	2.6	18	92	0	74	17	39	0	43	1.49
9991916--9991978	31	2.0	31	90	0	99	44	4	9	41	1.58
10005298--10005397	48	2.1	48	90	3	157	41	19	4	36	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131