genome.fa.s9.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  18  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6149811--6149887	22	3.5	22	84	13	104	44	0	29	25	1.55
6149811--6149887	33	2.3	33	82	10	102	44	0	29	25	1.55
6153465--6153492	12	2.3	12	100	0	56	21	0	0	78	0.75
6155296--6155329	17	1.9	18	94	5	61	38	11	17	32	1.86
6158381--6158414	17	1.9	17	88	5	50	52	8	11	26	1.67
6158819--6158851	17	1.9	18	88	11	52	75	0	6	18	1.00
6160473--6160532	30	2.0	30	96	0	111	36	18	13	31	1.89
6172944--6172994	19	2.7	19	78	0	57	15	23	29	31	1.95
6172967--6173009	19	2.3	19	79	0	50	20	27	25	25	1.99
6175553--6175708	43	3.6	43	71	14	126	25	17	27	30	1.97
6177811--6177847	14	2.7	14	80	19	51	45	0	54	0	1.00
6179289--6179324	16	2.2	16	95	0	63	25	0	33	41	1.55
6179560--6179594	18	2.0	17	88	5	52	54	0	0	45	0.99
6187335--6187483	54	2.8	54	86	7	214	50	10	25	13	1.74
6188091--6188118	4	7.0	4	100	0	56	0	25	0	75	0.81
6194337--6194361	13	1.9	13	100	0	50	64	16	8	12	1.49
6201199--6201387	51	3.8	49	77	6	191	26	17	26	28	1.98
6201205--6201389	102	1.8	101	87	5	275	25	18	26	29	1.98
6205511--6205578	27	2.5	28	88	4	104	39	8	1	50	1.43
6205579--6205622	9	5.0	9	83	5	54	86	9	2	2	0.75
6205581--6205620	8	4.9	8	87	9	55	87	7	2	2	0.71
6205579--6205623	17	2.7	16	86	6	63	86	8	2	2	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6205664--6205730	27	2.5	27	90	0	98	19	28	35	16	1.93
6205777--6205892	18	6.5	17	76	13	76	65	0	33	0	0.99
6205779--6205850	10	6.6	10	73	17	54	68	0	31	0	0.90
6205779--6205880	24	4.3	23	71	11	73	66	0	33	0	0.92
6205782--6205855	14	5.1	13	71	25	51	68	0	31	0	0.89
6205782--6205861	34	2.8	28	75	24	85	67	0	32	0	0.91
6205797--6205903	38	2.9	38	90	5	168	65	0	33	0	0.99
6205799--6205899	10	10.5	10	72	16	79	65	0	33	0	1.00
6206491--6206559	27	2.5	26	84	15	95	40	10	1	47	1.46
6206560--6206595	17	2.1	17	89	0	54	80	11	5	2	0.98
6207898--6207934	17	2.2	17	100	0	74	29	16	8	45	1.76
6208900--6208928	14	2.1	14	100	0	58	37	6	0	55	1.27
6211458--6211495	18	2.1	18	95	0	67	18	42	5	34	1.73
6211461--6211502	18	2.3	18	87	0	66	23	45	2	28	1.66
6212231--6212271	3	13.7	3	100	0	82	65	0	0	34	0.93
6212366--6212443	27	2.9	27	88	3	104	15	29	26	28	1.96
6212493--6212561	27	2.5	27	85	2	93	47	1	10	40	1.46
6212497--6212561	28	2.4	27	84	7	87	47	1	10	40	1.48
6218798--6220544	872	2.0	873	99	0	3478	33	15	16	33	1.91
6224694--6224741	20	2.4	21	75	10	55	64	0	25	10	1.25
6227974--6228121	57	2.5	61	81	11	182	30	18	25	25	1.98
6233505--6233541	19	2.0	19	89	5	58	43	24	5	27	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6237476--6237539	33	1.9	33	87	0	92	31	14	0	54	1.40
6237524--6237576	21	2.5	21	73	8	54	26	15	0	58	1.37
6237604--6237643	17	2.3	18	91	8	66	25	10	0	65	1.24
6237642--6237824	28	6.6	28	74	13	130	26	15	1	55	1.50
6237674--6237828	23	6.9	23	73	13	110	28	14	1	56	1.46
6237746--6237817	18	4.1	18	72	16	53	29	13	0	56	1.38
6237771--6237824	11	4.8	11	90	4	90	29	18	0	51	1.46
6237857--6237896	17	2.4	17	87	8	55	30	12	0	57	1.36
6237875--6237923	25	2.0	25	83	0	62	40	10	2	46	1.49
6238052--6238103	17	2.9	17	85	5	59	23	19	1	55	1.53
6238096--6238144	17	2.8	18	84	6	64	36	8	0	55	1.30
6238179--6238231	24	2.2	24	93	0	88	35	9	0	54	1.33
6238194--6238253	24	2.5	24	83	5	68	33	10	0	56	1.32
6239321--6239349	5	6.0	5	92	8	51	62	37	0	0	0.96
6240806--6240836	13	2.4	13	94	0	53	22	3	0	74	0.96
6242286--6242332	22	2.2	22	85	14	64	55	2	0	42	1.12
6250259--6250660	44	9.0	44	74	9	298	33	16	19	30	1.94
6250259--6250963	132	5.4	133	74	13	320	33	16	20	30	1.94
6250659--6250954	44	6.5	45	76	8	249	32	14	21	31	1.93
6250546--6250781	113	2.0	115	87	4	341	35	14	20	29	1.92
6250777--6251003	44	5.2	44	82	3	244	31	14	22	31	1.94
6250777--6250987	88	2.4	88	84	1	271	30	15	22	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6251295--6251353	22	2.7	22	84	5	75	10	47	18	23	1.79
6251543--6251748	102	2.0	103	99	0	405	46	10	7	34	1.67
6252604--6252650	3	15.7	3	100	0	94	31	0	0	68	0.90
6255228--6255300	37	2.0	37	97	0	137	13	20	28	36	1.91
6255799--6255824	12	2.2	12	100	0	52	76	15	7	0	0.99
6255925--6256056	53	2.5	54	79	9	137	46	21	17	14	1.84
6280428--6280477	6	8.3	6	100	0	100	50	16	0	34	1.45
6285984--6286008	12	2.1	12	100	0	50	24	36	24	16	1.94
6286961--6287017	26	2.2	26	93	0	96	22	29	7	40	1.80
6287480--6287860	190	2.0	190	99	0	753	31	21	13	33	1.92
6301707--6301810	39	2.6	41	92	6	153	31	15	16	36	1.90
6301721--6301810	39	2.3	39	100	0	180	30	17	15	36	1.91
6301820--6301894	32	2.3	32	88	0	114	24	28	4	44	1.72
6306225--6306320	38	2.6	38	72	24	87	29	22	4	43	1.72
6311060--6311086	2	13.5	2	100	0	54	0	48	0	51	1.00
6314968--6315032	3	21.7	3	100	0	130	67	0	0	32	0.91
6316534--6316693	47	3.4	47	82	3	196	42	20	15	21	1.89
6317272--6317397	43	3.0	42	82	4	137	30	26	14	29	1.95
6320624--6320673	9	5.6	9	87	0	55	46	24	6	24	1.75
6320625--6320673	18	2.7	18	90	0	80	44	24	6	24	1.76
6320783--6320822	18	2.2	18	86	0	53	12	2	45	40	1.56
6331432--6331484	3	17.7	3	92	0	88	67	0	30	1	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6331856--6331926	25	2.8	25	79	14	83	30	4	2	61	1.29
6334226--6334294	33	2.1	33	83	5	86	27	14	23	34	1.94
6336023--6336068	25	1.9	23	82	8	56	36	10	6	45	1.65
6341799--6341832	17	1.9	18	88	5	52	52	8	5	32	1.56
6342298--6342329	11	2.8	11	95	4	55	87	12	0	0	0.54
6344128--6344564	220	2.0	219	90	3	682	34	18	13	33	1.90
6344819--6344881	18	3.5	17	75	14	56	73	1	4	20	1.11
6346442--6346487	25	1.9	23	82	8	56	36	10	6	45	1.65
6352218--6352251	17	1.9	18	88	5	52	52	8	5	32	1.56
6352717--6352748	11	2.8	11	95	4	55	87	12	0	0	0.54
6354613--6355054	221	2.0	221	100	0	884	32	14	14	39	1.86
6355241--6355303	18	3.5	17	75	14	56	73	1	4	20	1.11
6356962--6357525	44	12.5	44	73	11	309	29	20	18	30	1.97
6357006--6357255	139	1.8	138	84	4	342	30	20	20	30	1.97
6356895--6357298	183	2.2	182	89	0	628	29	21	18	30	1.97
6356949--6357537	227	2.6	227	89	2	869	28	20	18	31	1.97
6356994--6357534	183	3.0	179	81	7	533	28	20	19	31	1.97
6357560--6357659	51	2.0	51	85	0	137	25	28	20	27	1.99
6357637--6357680	21	2.1	21	86	0	61	20	34	6	38	1.79
6357590--6357731	72	2.0	72	84	0	185	24	26	16	33	1.96
6357658--6357876	51	4.3	51	82	0	240	26	23	17	31	1.97
6357546--6357779	123	1.9	123	87	0	342	25	26	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6357658--6357876	102	2.1	102	84	1	278	26	23	17	31	1.97
6366610--6367051	220	2.0	219	92	2	744	33	18	13	34	1.90
6368391--6368420	13	2.2	14	94	5	53	13	0	13	73	1.10
6370762--6370852	45	2.0	45	97	0	173	35	10	18	35	1.86
6371290--6371334	23	1.9	24	86	4	65	33	4	2	60	1.29
6374618--6374650	2	17.0	2	93	6	59	51	0	0	48	1.00
6381937--6382057	45	2.7	45	82	5	147	23	25	20	30	1.98
6382082--6382324	44	5.6	43	73	8	204	29	22	19	28	1.98
6383238--6383286	25	1.9	26	91	4	82	59	10	16	14	1.61
6390392--6390432	20	2.0	21	86	13	59	58	0	7	34	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131