genome.fa.s9.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  38  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12312707--12312748	18	2.3	18	92	8	68	54	4	11	28	1.57
12312702--12312740	8	4.8	8	85	14	53	61	2	10	25	1.41
12323200--12323248	21	2.3	21	96	0	89	18	22	20	38	1.93
12326121--12326150	15	1.9	16	93	6	53	63	6	10	20	1.47
12327909--12327936	12	2.3	12	100	0	56	28	42	21	7	1.79
12331405--12331479	28	2.9	25	70	18	71	29	20	26	24	1.99
12339115--12339194	25	3.2	25	75	20	87	31	21	26	21	1.98
12339128--12339195	24	2.8	25	82	13	95	29	22	25	23	1.99
12341935--12342004	27	2.6	27	76	13	72	37	11	27	24	1.89
12344052--12344076	12	2.1	12	100	0	50	32	20	16	32	1.94
12344621--12344661	6	6.8	6	97	0	73	0	65	0	34	0.93
12347404--12347439	16	2.2	16	100	0	72	38	36	0	25	1.56
12350646--12350730	25	3.4	25	75	0	89	24	25	16	32	1.96
12351732--12351796	34	1.9	34	90	6	105	15	29	32	23	1.95
12361508--12361541	18	1.9	17	88	5	50	50	2	0	47	1.16
12362236--12362298	24	2.7	23	76	11	65	66	6	0	26	1.15
12362242--12362297	24	2.3	24	81	3	67	66	7	0	26	1.18
12374377--12374429	25	2.1	25	85	0	70	30	32	16	20	1.95
12389371--12389458	44	2.0	44	81	0	104	29	14	13	42	1.84
12395193--12395325	44	3.0	44	100	0	266	38	15	15	30	1.89
12396063--12396092	15	2.0	15	100	0	60	40	13	20	26	1.89
12396773--12396812	20	2.0	20	90	0	62	12	27	22	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12400400--12400452	25	2.1	25	96	0	97	32	7	18	41	1.79
12401489--12401521	7	4.7	7	88	11	50	12	15	0	72	1.12
12401490--12401516	13	2.1	13	100	0	54	14	14	0	70	1.17
12402407--12402465	14	4.4	14	73	18	54	13	5	5	76	1.13
12402416--12402462	24	1.9	25	86	4	69	14	6	6	72	1.25
12407774--12407814	21	2.0	20	85	4	55	68	12	12	7	1.39
12418155--12418192	20	1.9	20	84	10	51	36	7	18	36	1.80
12431574--12431606	17	1.9	17	93	0	57	60	0	0	39	0.97
12437980--12438031	27	2.0	27	84	3	70	44	13	13	28	1.82
12439451--12439568	43	2.7	42	82	7	139	28	16	25	28	1.97
12445310--12445337	13	2.2	13	100	0	56	28	21	17	32	1.96
12445505--12445535	12	2.6	12	94	0	53	6	41	25	25	1.79
12446258--12446416	38	4.2	38	87	0	228	35	30	18	16	1.93
12446353--12446471	16	6.7	16	72	20	94	31	30	21	16	1.95
12446322--12446508	92	2.0	92	94	0	329	33	29	19	17	1.95
12446353--12446470	54	2.2	54	92	0	191	32	30	20	16	1.95
12446406--12446552	38	3.9	37	90	2	213	34	28	20	16	1.94
12446422--12446493	22	3.6	21	70	22	64	34	29	19	16	1.94
12446275--12446546	130	2.1	130	90	1	429	34	30	19	15	1.93
12446459--12446531	22	3.6	22	68	21	77	31	30	21	16	1.95
12457109--12457146	20	1.9	20	84	10	51	15	0	7	76	1.01
12466551--12466575	9	2.8	9	100	0	50	12	0	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12472731--12472762	16	2.0	16	93	0	55	37	3	0	59	1.13
12476566--12476611	20	2.3	20	84	0	56	36	19	19	23	1.95
12476575--12476622	20	2.4	20	92	0	78	33	12	25	29	1.92
12478391--12478424	17	2.0	17	88	0	50	11	20	0	67	1.21
12478419--12478476	18	3.2	18	82	0	71	13	17	3	65	1.40
12479616--12479662	10	4.7	10	89	7	69	17	2	6	74	1.12
12479616--12479662	19	2.3	20	89	7	69	17	2	6	74	1.12
12480627--12480686	28	2.1	29	90	3	95	25	25	23	26	2.00
12493684--12493733	25	2.0	25	100	0	100	52	8	20	20	1.71
12496176--12496220	18	2.5	19	82	10	58	33	4	26	35	1.77
12498013--12498072	31	1.9	31	93	6	104	23	3	23	50	1.64
12502931--12502981	23	2.2	22	78	21	52	70	1	1	25	1.08
12503130--12503189	25	2.4	26	83	8	79	46	1	0	51	1.10
12505286--12505314	7	4.1	7	100	0	58	58	13	0	27	1.36
12508857--12508897	12	3.4	12	86	10	57	14	56	7	21	1.63
12518757--12518783	14	1.9	14	100	0	54	25	14	0	59	1.36
12524409--12524446	14	2.7	14	95	0	67	44	5	21	28	1.73
12526524--12526592	33	2.2	31	92	7	120	33	24	18	23	1.97
12526676--12526750	38	2.0	38	91	0	123	14	17	44	24	1.86
12526777--12526851	38	2.0	38	91	0	123	32	32	9	26	1.88
12528665--12528706	22	2.0	22	85	4	59	21	4	0	73	1.01
12528774--12528863	23	3.9	22	68	18	58	26	4	2	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12547093--12547135	18	2.5	17	81	7	50	58	11	2	27	1.46
12551767--12551886	23	5.2	23	74	7	100	23	15	20	40	1.90
12554680--12554769	25	3.6	26	79	11	82	22	23	21	33	1.97
12559663--12559719	29	2.0	29	86	6	80	24	10	33	31	1.89
12561745--12561783	5	8.0	5	86	13	55	43	0	0	56	0.99
12565594--12565622	7	4.3	7	91	8	51	86	0	13	0	0.58
12565594--12565622	13	2.1	14	93	6	51	86	0	13	0	0.58
12583890--12583930	17	2.5	16	88	4	64	17	31	0	51	1.46
12584402--12584461	30	2.0	30	96	0	111	36	13	15	35	1.86
12587283--12587316	13	2.6	13	85	0	50	41	0	29	29	1.57
12591531--12591607	35	2.2	36	85	2	102	31	7	24	36	1.84
12592125--12592195	27	2.6	27	90	0	106	23	12	21	42	1.87
12595750--12595891	38	3.7	38	78	5	144	28	28	26	16	1.97
12595873--12595950	41	1.9	41	86	5	113	34	32	17	15	1.92
12600669--12600709	15	2.8	15	88	3	57	21	7	2	68	1.26
12606329--12606583	30	8.5	30	74	7	164	24	24	14	36	1.93
12606358--12606550	60	3.2	60	80	11	189	25	24	11	37	1.90
12606535--12606604	30	2.4	30	83	7	81	20	31	12	35	1.90
12609916--12610046	27	4.9	27	79	0	136	32	21	14	31	1.93
12612808--12612877	26	2.7	26	90	0	104	37	24	21	17	1.94
12619343--12619377	17	2.1	17	100	0	70	22	22	11	42	1.85
12623307--12623364	28	2.1	28	100	0	116	43	13	15	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12629479--12629534	24	2.3	24	84	0	67	21	14	35	28	1.92
12634341--12634445	43	2.4	43	83	0	120	33	15	17	34	1.91
12634911--12634961	21	2.4	21	83	0	57	5	45	15	33	1.71
12640805--12640874	35	2.0	35	97	0	131	31	7	11	50	1.65
12644832--12644919	41	2.1	41	89	0	131	27	15	17	39	1.90
12644840--12644929	41	2.2	41	83	0	117	33	15	15	35	1.89
12666507--12666680	25	7.0	25	80	2	179	33	22	17	27	1.96
12666507--12666682	75	2.3	75	82	3	212	33	22	17	26	1.96
12666507--12666704	25	7.9	25	80	2	173	34	21	16	26	1.95
12668143--12668260	59	2.0	59	91	3	193	46	11	13	28	1.77
12673789--12673919	43	3.1	42	73	6	120	56	9	16	16	1.66
12681089--12681135	22	2.0	24	88	8	71	68	0	8	23	1.17
12681868--12682165	44	6.9	45	72	16	168	27	23	19	30	1.98
12690118--12690163	24	1.9	24	86	0	65	13	26	15	45	1.82
12694483--12694529	22	2.0	24	88	8	71	68	0	8	23	1.17
12700214--12700396	50	3.6	50	92	0	285	32	11	25	30	1.91
12709105--12709131	2	13.5	2	100	0	54	51	0	48	0	1.00
12719287--12719326	21	2.0	21	85	5	55	67	2	10	20	1.31
12731125--12731169	21	2.1	21	84	8	56	17	8	15	57	1.63
12735196--12735226	16	1.9	16	93	0	53	48	0	9	41	1.36
12735743--12735793	25	2.0	25	96	0	93	21	27	33	17	1.96
12736808--12737770	50	19.2	49	70	5	417	23	21	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12736781--12737770	100	9.9	100	85	2	1132	23	21	23	32	1.98
12737873--12738556	44	14.7	44	67	19	275	28	20	18	32	1.97
12737819--12738527	142	5.0	142	92	1	1145	28	20	18	32	1.96
12738156--12738342	98	1.9	97	81	8	227	26	21	19	32	1.97
12740868--12740961	30	3.1	30	84	6	102	9	6	9	74	1.22
12746660--12746697	16	2.4	16	90	0	58	50	0	7	42	1.31
12749841--12749916	6	12.7	6	86	5	100	14	2	13	69	1.29
12754810--12754840	16	1.9	16	93	0	53	48	0	9	41	1.36
12773432--12773463	14	2.3	14	100	0	64	53	0	0	46	1.00
12777981--12778040	29	2.1	28	81	6	68	25	11	15	48	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131