genome.fa.s9.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  41  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13662282--13662972	345	2.0	346	99	0	1375	39	19	10	30	1.85
13663666--13663714	19	2.7	18	81	12	55	40	4	10	44	1.57
13666328--13666493	41	4.0	41	100	0	332	40	19	9	30	1.83
13675815--13675885	35	2.0	35	100	0	142	22	16	25	35	1.95
13676774--13676846	29	2.5	29	76	8	76	42	16	13	27	1.86
13676867--13676937	30	2.4	29	83	2	79	33	19	18	28	1.95
13680487--13680594	23	5.0	22	82	7	89	35	23	23	18	1.96
13680520--13680595	23	3.4	23	89	3	102	34	23	22	19	1.97
13684402--13684591	50	3.7	50	77	4	173	27	22	28	22	1.99
13689922--13689953	15	2.1	15	100	0	64	50	6	6	37	1.53
13705538--13705593	21	2.7	21	82	0	67	28	7	33	30	1.84
13709252--13709280	14	2.0	15	93	6	51	44	41	0	13	1.44
13709884--13710019	71	1.9	71	95	0	245	26	16	14	42	1.86
13721918--13721944	11	2.5	11	100	0	54	33	29	0	37	1.58
13723776--13723818	18	2.4	18	84	0	50	18	25	9	46	1.79
13724059--13724106	21	2.3	22	82	17	66	33	41	16	8	1.78
13724059--13724114	21	2.6	22	77	8	62	32	46	14	7	1.71
13727079--13728703	43	38.2	42	73	8	867	18	33	30	17	1.94
13727104--13728703	298	5.4	299	79	6	1419	18	33	30	17	1.94
13727079--13728054	341	2.9	339	81	5	1031	19	34	29	17	1.94
13727102--13728711	170	9.4	169	79	5	1304	18	33	30	17	1.94
13727102--13728711	85	18.9	85	79	5	1167	18	33	30	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13741982--13742049	34	2.0	34	97	0	127	35	25	5	33	1.80
13743460--13743501	20	2.0	21	82	13	52	23	35	14	26	1.93
13744573--13744611	16	2.4	16	87	8	53	10	15	5	69	1.34
13755550--13755597	23	2.0	24	88	4	71	27	18	25	29	1.98
13757591--13757781	98	1.9	99	90	1	303	35	8	13	42	1.75
13759259--13759388	39	3.3	39	86	3	163	33	15	18	32	1.92
13762637--13762844	39	5.3	39	87	0	281	32	14	19	33	1.92
13775259--13775320	4	15.5	4	100	0	124	25	0	24	50	1.50
13777253--13777409	44	3.6	43	81	8	158	29	22	18	29	1.98
13777471--13777560	44	2.0	44	82	4	110	34	20	15	30	1.93
13777575--13777708	44	3.0	44	80	1	151	24	14	22	38	1.92
13777934--13778243	96	3.4	93	70	19	272	32	21	16	30	1.95
13777878--13778274	181	2.2	181	91	1	636	31	22	16	29	1.96
13777984--13778338	44	7.9	45	70	10	183	29	23	17	29	1.97
13778356--13778933	50	11.7	50	73	4	418	25	21	22	30	1.99
13778356--13778955	100	6.1	100	85	1	742	26	21	22	29	1.99
13778334--13778883	150	3.7	149	74	4	522	26	21	21	30	1.98
13778424--13778955	195	2.7	199	87	1	739	25	21	22	29	1.99
13779825--13779867	10	4.4	9	78	16	50	2	16	0	81	0.79
13785899--13785948	24	2.0	25	85	11	68	18	12	14	56	1.68
13786714--13786761	20	2.5	20	89	3	71	54	10	2	33	1.46
13786751--13786787	19	2.0	19	89	5	58	56	10	0	32	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13790442--13790619	88	2.0	88	100	0	356	35	14	19	30	1.91
13801917--13802063	38	3.8	38	99	0	285	36	10	20	31	1.87
13806841--13807808	323	3.0	324	96	0	1758	37	17	14	30	1.90
13815156--13815189	12	2.8	12	100	0	68	35	8	14	41	1.77
13815250--13815294	22	2.0	22	95	0	81	33	2	22	42	1.66
13816862--13817001	52	2.7	52	86	0	190	27	8	22	41	1.83
13817257--13817412	40	4.0	40	73	7	113	28	17	23	30	1.97
13817273--13817424	79	1.9	81	82	5	193	26	20	23	30	1.98
13825860--13825884	13	1.9	13	100	0	50	40	24	4	32	1.73
13829479--13829727	124	2.0	124	98	1	482	34	20	11	34	1.88
13832445--13832537	46	2.0	46	93	0	159	23	18	21	36	1.95
13838757--13838800	3	14.7	3	81	9	54	36	0	2	61	1.09
13838753--13838798	22	2.1	22	88	8	67	39	0	2	58	1.10
13838825--13838857	17	1.9	17	93	0	57	72	9	15	3	1.21
13839384--13839468	40	2.1	41	86	2	118	29	8	20	42	1.81
13839714--13839755	12	3.5	12	86	0	57	16	21	16	45	1.86
13843242--13843278	17	2.2	17	100	0	74	18	5	40	35	1.74
13844367--13844399	14	2.4	14	100	0	66	21	36	9	33	1.85
13847678--13847902	75	3.0	76	87	5	325	49	7	13	29	1.69
13847950--13848159	66	3.1	66	63	25	157	40	9	5	44	1.59
13847878--13848435	275	2.0	275	90	2	879	40	9	6	43	1.62
13847878--13848435	138	4.1	137	90	1	850	40	9	6	43	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13854198--13854451	50	5.1	50	90	0	373	21	30	19	28	1.98
13855727--13855770	18	2.4	19	77	11	56	9	29	13	47	1.74
13857978--13858212	119	2.0	117	91	1	380	43	8	5	41	1.59
13858097--13858352	138	1.8	139	93	1	442	41	9	5	42	1.61
13858235--13858469	119	2.0	117	93	1	398	44	9	5	41	1.59
13857974--13858597	257	2.4	257	98	0	1189	41	8	5	43	1.59
13860959--13861030	23	3.2	23	82	2	83	50	25	9	15	1.74
13870113--13870139	6	4.5	6	100	0	54	85	0	14	0	0.61
13879851--13879944	49	1.9	49	93	0	161	24	26	17	31	1.97
13881074--13881142	21	3.2	21	81	8	68	43	8	1	46	1.43
13892640--13892776	68	2.0	71	85	7	192	41	2	5	50	1.39
13895655--13895700	20	2.2	20	84	3	56	41	15	13	30	1.85
13898336--13898365	6	5.0	6	100	0	60	50	16	0	33	1.46
13901689--13901848	53	3.0	53	87	4	232	41	21	18	18	1.90
13901700--13901848	27	5.6	27	84	4	203	42	20	18	18	1.90
13902084--13902162	26	3.0	27	76	9	83	18	20	25	35	1.95
13902264--13902442	28	6.4	28	89	5	283	22	25	22	29	1.99
13904260--13904417	83	1.9	83	89	0	244	36	27	8	27	1.86
13906760--13906844	36	2.4	36	90	2	136	51	23	4	20	1.65
13906822--13906850	10	2.9	10	100	0	58	62	17	0	20	1.33
13907077--13907130	29	1.9	29	85	14	78	42	9	0	48	1.35
13907082--13907138	26	2.1	29	83	9	75	47	8	0	43	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13907118--13907158	21	2.0	20	86	9	57	51	4	2	41	1.36
13907778--13907824	23	2.0	25	87	8	71	27	6	14	51	1.67
13907829--13908038	25	7.7	25	70	23	113	22	3	16	56	1.56
13907788--13907981	60	3.2	60	99	0	379	22	5	17	55	1.61
13907788--13907944	21	7.7	21	67	23	95	24	5	16	54	1.62
13907854--13907956	35	3.2	35	71	25	127	23	5	16	54	1.64
13908025--13908147	60	2.1	57	83	7	149	25	1	17	55	1.51
13908129--13908167	13	3.1	12	92	7	60	25	0	17	56	1.41
13908130--13908170	9	4.7	9	82	11	50	24	0	19	56	1.42
13916250--13916377	34	3.8	34	76	10	120	39	0	14	45	1.45
13916225--13916362	68	2.1	67	80	6	158	39	0	18	42	1.50
13916430--13916691	126	2.1	126	91	0	416	34	17	18	29	1.94
13919313--13920443	565	2.0	566	99	0	2237	30	18	23	26	1.98
13920924--13920983	18	3.3	18	95	0	102	41	6	28	23	1.79
13922357--13922425	30	2.3	30	94	0	120	39	1	26	33	1.65
13929759--13929832	27	2.7	27	93	0	121	24	20	35	20	1.96
13934035--13934076	20	2.0	21	86	13	59	28	2	19	50	1.60
13939063--13939127	16	4.1	16	91	0	112	40	4	35	20	1.73
13942574--13942614	17	2.4	17	95	0	73	12	29	39	19	1.88
13945687--13945731	20	2.2	21	88	8	74	33	4	31	31	1.78
13945693--13945735	20	2.2	20	100	0	86	39	4	23	32	1.75
13960593--13960647	23	2.4	23	93	0	92	38	18	18	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13970404--13970448	23	2.0	23	90	0	72	17	22	20	40	1.92
13977853--13977947	25	3.9	25	84	2	113	35	20	23	21	1.96
13977996--13978065	24	2.9	24	79	14	65	32	20	24	22	1.97
13982932--13982998	27	2.5	27	80	4	82	32	17	14	34	1.91
13983270--13983346	34	2.3	33	89	6	120	25	24	24	24	2.00
13989151--13989271	27	4.5	27	82	2	145	33	16	14	36	1.89
13992929--13993054	55	2.3	54	82	5	139	37	0	33	28	1.63
13995692--13995940	87	2.8	88	87	3	342	36	14	26	21	1.92
13995700--13995941	29	8.3	29	80	6	256	37	14	27	20	1.92
13995700--13995941	88	2.8	87	87	3	317	37	14	27	20	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131