genome.fa.s9.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  98  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32618203--32618499	60	4.6	62	83	10	348	47	26	0	25	1.52
32618292--32618500	37	5.0	37	69	25	139	47	26	0	25	1.52
32617812--32618490	172	3.8	175	79	13	639	46	24	0	27	1.59
32618395--32618583	21	8.6	21	74	11	105	46	27	0	25	1.57
32618649--32618830	54	3.2	54	65	14	143	41	9	4	44	1.58
32618590--32618830	115	2.1	116	93	2	414	39	9	6	44	1.62
32620552--32620595	21	2.1	21	100	0	88	25	15	27	31	1.96
32621837--32622183	123	2.8	121	90	3	541	32	22	16	29	1.95
32630472--32630521	21	2.4	21	90	3	75	12	32	32	24	1.91
32630585--32630636	13	3.8	14	80	12	54	11	25	38	25	1.89
32633421--32633470	24	2.0	26	85	14	70	76	10	4	10	1.15
32634903--32634943	17	2.6	16	82	17	50	34	0	4	60	1.18
32634902--32634943	14	3.2	13	83	12	59	33	0	4	61	1.17
32639506--32639545	12	3.8	11	84	15	50	77	10	0	12	0.99
32639662--32639703	18	2.3	18	91	0	66	26	19	30	23	1.98
32639670--32639704	18	1.9	18	100	0	70	22	17	28	31	1.96
32639670--32639711	18	2.3	18	91	0	66	19	14	30	35	1.91
32643110--32643726	86	7.1	86	85	2	838	28	22	24	24	1.99
32643110--32643726	173	3.5	173	93	1	1018	28	22	24	24	1.99
32644343--32644383	21	1.9	21	90	5	64	78	12	2	7	1.06
32645825--32645865	17	2.6	16	82	17	50	34	0	4	60	1.18
32645824--32645865	14	3.2	13	83	12	59	33	0	4	61	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32650527--32650562	15	2.4	15	90	0	54	52	5	36	5	1.48
32654492--32654535	11	3.8	12	80	19	58	25	31	0	43	1.55
32656436--32656473	18	2.1	18	90	0	58	21	28	7	42	1.81
32657000--32657132	66	2.0	66	100	0	266	45	22	3	28	1.67
32657124--32657206	21	3.9	21	75	1	76	49	27	3	19	1.65
32657167--32657368	22	8.9	22	73	15	144	51	28	0	19	1.51
32657195--32657358	29	5.3	30	71	13	127	53	26	0	19	1.50
32657306--32657401	43	2.2	44	83	9	117	48	27	0	23	1.51
32657335--32657401	15	4.6	15	81	5	84	47	25	0	26	1.52
32657335--32657408	29	2.6	29	86	4	96	45	27	0	27	1.54
32657226--32657380	65	2.4	65	78	10	174	51	27	0	20	1.52
32660619--32660910	125	2.3	126	84	5	378	31	23	16	29	1.96
32663133--32663163	3	10.3	3	92	0	53	67	0	0	32	0.91
32663963--32664010	6	7.8	6	84	13	53	77	0	2	20	0.88
32663964--32664010	16	3.0	16	75	6	51	76	0	2	21	0.89
32666373--32666407	15	2.4	14	90	9	52	45	11	0	42	1.40
32670535--32670787	87	2.9	86	87	2	346	29	30	17	22	1.97
32670389--32670807	43	9.7	43	73	5	283	28	28	20	23	1.99
32670547--32670807	86	3.0	86	87	3	337	30	30	16	22	1.96
32671157--32671268	21	5.3	21	86	0	134	4	43	17	33	1.69
32671240--32671386	66	2.2	66	89	2	215	12	28	18	40	1.88
32678209--32678324	40	3.0	40	78	6	121	20	20	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32678482--32678764	140	2.0	142	91	3	462	33	11	10	43	1.76
32678815--32678847	17	2.0	17	88	5	50	39	0	3	57	1.14
32680352--32680385	14	2.4	14	95	5	59	47	8	0	44	1.34
32684290--32684345	19	2.8	19	94	5	94	37	10	16	35	1.83
32684291--32684368	19	3.6	24	80	16	75	37	8	15	38	1.79
32684571--32684615	23	2.0	23	81	0	54	22	0	15	62	1.33
32685178--32685233	20	2.8	20	78	13	69	37	14	1	46	1.55
32686716--32686801	24	3.5	25	80	6	88	38	20	25	15	1.92
32686762--32686829	24	2.8	24	81	2	73	38	20	26	14	1.91
32695218--32695273	21	2.7	21	91	0	94	28	30	8	32	1.88
32696824--32696880	30	1.9	30	82	13	73	38	24	7	29	1.82
32711829--32711853	12	2.1	12	100	0	50	52	8	0	40	1.31
32718128--32718370	50	4.7	50	83	3	252	23	29	20	25	1.99
32720143--32720233	30	3.0	30	95	0	155	36	3	16	43	1.64
32722732--32722781	26	1.9	26	92	8	84	26	2	2	70	1.09
32724114--32724435	33	9.8	33	99	0	637	24	0	39	36	1.56
32737165--32737218	26	2.1	25	83	10	65	29	1	0	68	1.00
32737147--32737431	142	2.0	143	99	0	563	32	9	5	52	1.56
32737307--32737360	26	2.1	25	83	10	65	29	1	0	68	1.00
32737492--32737525	6	5.3	6	86	13	50	0	5	50	44	1.26
32737492--32737525	13	2.7	12	83	16	50	0	5	50	44	1.26
32741066--32741133	28	2.4	28	82	0	82	17	25	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32756394--32756471	25	3.1	25	79	3	86	21	24	17	35	1.95
32758537--32758567	9	3.4	9	90	0	53	25	12	22	38	1.90
32758616--32758652	9	4.1	9	92	0	65	45	13	10	29	1.77
32764794--32764866	34	2.2	34	87	4	105	57	0	28	13	1.37
32764802--32764877	34	2.4	32	81	12	93	52	0	31	15	1.43
32772143--32772208	29	2.2	30	81	15	82	54	0	30	15	1.41
32774412--32774720	42	7.2	43	86	3	367	33	21	20	24	1.97
32774412--32774766	85	4.2	84	83	4	406	33	20	20	25	1.97
32774412--32774767	43	8.3	42	86	3	419	33	20	20	25	1.97
32775232--32775304	12	6.3	12	82	9	89	4	38	17	39	1.69
32775268--32775336	21	3.3	21	87	0	93	1	37	20	40	1.61
32785385--32785495	35	3.1	35	74	3	89	45	27	3	24	1.70
32785518--32785580	31	2.0	32	87	3	92	38	41	1	19	1.61
32785591--32785826	112	2.1	110	80	5	260	29	25	21	22	1.99
32786051--32786083	13	2.5	13	95	0	57	6	21	54	18	1.64
32791438--32791468	8	3.9	8	100	0	62	38	0	22	38	1.54
32796181--32796265	42	2.0	42	100	0	170	25	18	21	34	1.96
32800001--32800132	67	2.0	67	95	0	237	21	19	31	26	1.98
32810560--32810595	15	2.3	16	85	9	56	25	8	41	25	1.83
32813161--32813198	16	2.4	16	86	8	51	15	31	0	52	1.43
32822902--32823251	125	2.8	126	88	2	535	29	17	22	30	1.97
32825797--32825821	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32829440--32829479	18	2.2	18	90	0	62	40	7	32	20	1.80
32829779--32830002	111	2.0	112	97	0	423	25	23	19	32	1.98
32831425--32831464	18	2.2	18	95	0	71	40	7	30	22	1.81
32833274--32833371	51	1.9	51	87	4	144	45	3	23	27	1.67
32833333--32833392	11	5.3	11	75	20	61	41	1	28	28	1.66
32833333--32833392	23	2.7	21	80	19	68	41	1	28	28	1.66
32839762--32839807	22	2.0	22	84	12	58	58	4	2	34	1.30
32843410--32843504	37	2.6	36	75	18	88	45	1	2	51	1.20
32848010--32848057	19	2.4	21	76	20	57	56	4	8	31	1.48
32850976--32851026	19	2.6	20	84	9	61	35	0	5	58	1.22
32854514--32854555	17	2.4	17	77	18	50	35	4	2	57	1.33
32854521--32854562	17	2.5	17	80	7	50	40	2	4	52	1.35
32867942--32868136	73	2.6	72	77	4	201	33	22	26	17	1.96
32867995--32868135	25	5.6	25	70	12	94	33	22	25	18	1.97
32868076--32868135	26	2.3	26	82	0	75	36	20	23	20	1.95
32868591--32868641	21	2.4	21	83	6	59	41	19	1	37	1.63
32869957--32869985	14	2.0	15	93	6	51	0	20	3	75	0.94
32872351--32872562	102	2.1	102	94	1	372	52	16	15	15	1.74
32872686--32872737	24	2.2	24	85	0	68	53	9	3	32	1.51
32874430--32874465	18	1.9	19	88	5	56	38	0	27	33	1.57
32874985--32875122	40	3.5	40	76	8	149	26	15	25	32	1.96
32875872--32875942	8	9.2	8	71	11	51	43	1	1	53	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32875912--32875940	10	2.9	10	100	0	58	41	0	0	58	0.98
32875912--32875940	15	1.9	15	100	0	58	41	0	0	58	0.98
32875958--32876022	4	15.8	4	79	17	71	73	3	21	1	1.05
32875962--32876022	33	1.9	31	90	6	95	73	3	21	1	1.06
32875967--32876030	29	2.4	27	78	17	55	71	3	23	1	1.08
32876320--32876355	18	1.9	19	88	5	56	38	0	27	33	1.57
32876931--32877068	40	3.5	40	76	8	149	26	15	25	32	1.96
32883875--32883945	35	2.0	35	97	0	133	35	8	9	46	1.67
32888841--32888935	46	2.1	46	96	4	174	10	16	44	28	1.81
32888843--32888921	26	3.3	26	62	20	71	10	16	45	27	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131