genome.fa.s9.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  32  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10334340--10334624	41	6.9	41	87	5	387	16	20	27	35	1.94
10334340--10334624	83	3.5	82	87	4	387	16	20	27	35	1.94
10334343--10334659	124	2.6	123	84	4	352	17	20	25	36	1.94
10334340--10334659	165	1.9	162	81	10	382	17	20	26	35	1.94
10334665--10334714	24	2.2	21	80	13	55	34	4	2	60	1.27
10339740--10339812	12	6.2	12	77	6	87	52	16	0	31	1.44
10339741--10339806	34	1.9	34	90	0	105	51	18	0	30	1.46
10339745--10339819	34	2.2	33	83	9	89	53	16	0	30	1.43
10339792--10339846	18	3.1	18	79	7	67	58	12	1	27	1.45
10339861--10339971	9	13.2	9	72	17	87	45	18	1	34	1.59
10339861--10339971	25	4.4	25	86	2	143	45	18	1	34	1.59
10339861--10339971	16	6.6	17	71	17	74	45	18	1	34	1.59
10346436--10346506	21	3.4	21	86	0	97	36	16	42	4	1.68
10346781--10346899	43	2.7	45	82	11	131	34	18	24	22	1.96
10346830--10346915	43	2.0	43	95	0	154	29	18	26	25	1.98
10348065--10348213	74	2.0	75	98	1	291	40	6	9	43	1.63
10353232--10353301	25	2.8	25	84	0	86	17	30	18	34	1.94
10364468--10364507	14	2.9	14	84	0	53	32	7	17	42	1.77
10364491--10364530	20	2.0	20	90	0	62	27	10	12	50	1.72
10364476--10364542	34	1.9	35	90	3	109	31	8	13	46	1.74
10364470--10364546	14	5.0	15	71	20	52	32	9	15	42	1.78
10370506--10370702	50	4.0	49	79	6	200	22	16	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10370512--10370695	100	1.8	101	89	3	291	22	16	28	32	1.96
10371077--10371117	17	2.3	18	87	8	57	4	24	7	63	1.40
10372072--10372119	21	2.3	20	93	6	87	16	6	20	56	1.62
10372656--10372693	15	2.5	15	95	0	67	15	10	31	42	1.81
10373305--10373338	16	2.1	16	100	0	68	23	0	0	76	0.79
10376984--10377026	21	2.0	21	86	8	61	34	0	6	58	1.25
10377860--10377898	16	2.4	16	82	0	51	25	33	7	33	1.84
10378871--10378940	35	2.0	35	97	0	131	34	4	25	35	1.76
10379413--10379468	19	2.7	20	76	21	53	41	1	16	41	1.58
10381531--10381570	20	2.0	20	85	0	53	47	20	2	30	1.63
10390564--10390746	82	2.2	82	81	1	224	34	25	20	18	1.96
10390567--10390716	41	3.7	41	92	1	230	32	26	22	18	1.97
10395820--10395957	50	2.7	50	77	3	152	31	31	16	20	1.95
10399986--10400091	50	2.2	50	88	6	155	33	20	25	19	1.97
10399977--10400094	25	4.8	25	71	14	84	35	20	23	20	1.96
10407315--10407507	95	2.0	96	98	1	379	40	6	8	44	1.59
10408978--10409084	53	2.0	53	100	0	214	39	26	16	17	1.91
10417177--10417220	18	2.4	18	100	0	88	47	11	13	27	1.77
10417581--10417649	21	3.3	21	87	2	95	11	24	7	56	1.60
10418806--10418874	29	2.4	27	84	11	93	63	0	5	30	1.17
10419810--10419835	12	2.2	12	100	0	52	57	0	7	34	1.27
10420298--10420339	19	2.2	19	91	0	66	23	16	2	57	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10421827--10421879	22	2.2	25	80	16	67	62	1	0	35	1.06
10421833--10421878	22	2.0	24	87	8	69	65	2	0	32	1.05
10429373--10429441	25	2.8	25	86	0	102	21	23	18	36	1.95
10429441--10429491	25	2.0	25	88	7	77	29	21	19	29	1.98
10437402--10437472	29	2.4	29	88	9	101	28	16	23	30	1.97
10437425--10437513	29	3.0	29	81	3	88	24	13	25	35	1.92
10439037--10439110	33	2.2	33	85	4	96	17	25	13	43	1.86
10451035--10451080	23	2.0	22	83	4	56	43	2	13	41	1.55
10453494--10453660	43	3.9	43	84	7	216	31	25	19	24	1.98
10453494--10453667	85	2.1	84	91	1	276	31	24	18	25	1.98
10458270--10458303	16	2.2	16	89	5	52	26	5	11	55	1.58
10461118--10461195	41	1.9	41	81	5	95	34	24	17	23	1.96
10462830--10462914	24	3.6	24	74	25	99	44	7	10	37	1.66
10468283--10468336	20	2.7	20	80	5	56	48	9	7	35	1.63
10470100--10470176	17	4.7	17	70	15	63	54	2	1	41	1.22
10470069--10470187	48	2.4	48	86	9	150	52	3	2	41	1.31
10470453--10470495	20	2.2	20	86	0	59	9	18	27	44	1.80
10473048--10473079	16	1.9	16	93	6	55	40	18	15	25	1.90
10474238--10474271	16	2.1	16	88	0	50	17	5	2	73	1.16
10474708--10474733	2	13.0	2	100	0	52	50	0	0	50	1.00
10475672--10475707	18	2.0	18	100	0	72	22	44	27	5	1.75
10482254--10482282	14	2.1	14	100	0	58	27	27	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10483415--10483577	51	3.3	51	88	4	237	28	23	13	34	1.93
10488094--10488131	4	9.0	4	91	8	58	50	0	0	50	1.00
10491370--10491427	12	4.7	12	76	16	55	63	0	1	34	1.04
10491382--10491433	27	1.9	27	84	7	70	65	1	1	30	1.14
10494502--10494530	6	4.8	6	100	0	58	0	68	17	13	1.20
10496885--10497222	103	3.4	102	75	10	365	39	2	17	40	1.62
10497264--10497805	126	4.3	126	94	1	890	33	16	21	28	1.95
10499300--10499343	18	2.4	18	84	0	52	45	11	25	18	1.82
10499984--10500015	7	4.6	7	100	0	64	56	15	0	28	1.40
10501129--10501184	30	2.0	28	86	10	78	57	3	0	39	1.16
10501189--10501256	11	6.2	11	78	11	68	41	1	35	22	1.63
10501189--10501252	33	1.9	33	84	12	87	40	1	34	23	1.64
10503721--10503770	26	1.9	26	84	8	66	50	0	14	36	1.43
10503920--10503960	3	13.3	3	84	5	55	60	2	2	34	1.23
10505592--10505638	21	2.4	19	77	19	51	44	0	0	55	0.99
10508503--10508589	3	28.3	3	80	4	84	1	36	1	60	1.11
10509653--10509921	132	2.0	132	97	0	511	37	15	17	30	1.91
10511484--10511513	14	2.2	14	94	5	53	10	13	6	70	1.34
10515021--10515064	22	2.0	22	86	0	61	29	4	22	43	1.73
10518212--10518240	11	2.6	11	100	0	58	31	0	48	20	1.50
10521284--10521309	2	13.0	2	100	0	52	0	50	0	50	1.00
10526257--10526281	11	2.3	11	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10530978--10531096	33	3.3	33	70	24	105	36	26	15	21	1.93
10531075--10531128	27	2.0	28	92	3	92	27	29	24	18	1.98
10531149--10531327	27	5.5	33	68	21	103	32	28	19	18	1.96
10530999--10531341	102	3.4	102	90	1	508	33	26	18	21	1.97
10538682--10538732	27	1.9	26	96	4	93	29	31	23	15	1.95
10538608--10538948	102	3.3	102	89	0	502	31	26	19	21	1.97
10551777--10552026	44	5.7	44	88	0	365	31	20	25	22	1.98
10551780--10552024	132	1.9	132	92	0	418	31	21	24	22	1.98
10551780--10552093	132	2.4	132	83	2	335	32	19	25	22	1.97
10552098--10552261	88	1.9	88	83	5	215	24	23	26	26	2.00
10553562--10553598	19	2.0	18	89	5	56	8	8	5	78	1.09
10569621--10569675	20	2.7	19	86	8	74	9	32	21	36	1.85
10574883--10574933	26	2.0	26	84	7	68	21	3	3	70	1.20
10574897--10574933	14	2.9	12	92	8	56	18	5	0	75	0.99
10575258--10575311	26	2.1	26	100	0	108	50	11	11	27	1.72
10576746--10576783	6	6.3	6	96	0	67	71	13	0	15	1.16
10583108--10583346	41	5.8	41	83	0	289	34	15	28	22	1.94
10587103--10587350	50	4.8	50	82	3	262	27	20	29	23	1.99
10587599--10587637	12	3.2	12	85	0	51	51	5	23	20	1.67
10592145--10592233	45	2.0	45	88	0	133	37	12	22	28	1.90
10592147--10592278	45	2.9	44	83	4	131	40	13	19	26	1.89
10592501--10592602	41	2.5	40	84	4	123	18	18	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10602005--10602128	46	2.7	45	79	4	142	33	20	20	25	1.97
10602382--10602520	41	3.4	41	79	2	145	18	17	27	35	1.94
10602886--10602930	22	2.0	22	100	0	90	13	13	22	51	1.75
10602886--10602939	22	2.5	22	90	6	74	14	11	22	51	1.73
10606578--10606612	18	1.9	18	94	0	61	34	8	31	25	1.86
10607264--10607288	7	3.6	7	100	0	50	60	12	0	28	1.32
10608429--10608541	51	2.2	50	90	1	181	47	0	23	28	1.52
10608514--10608587	21	3.4	22	78	12	82	41	0	33	24	1.55
10608531--10608586	10	5.2	11	73	18	55	41	0	37	21	1.53
10610750--10610962	106	2.0	107	98	0	410	40	4	15	39	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131