genome.fa.s9.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  95  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31751869--31751899	11	2.8	11	95	0	53	35	19	19	25	1.95
31760708--31760761	18	2.9	18	72	2	54	40	20	11	27	1.86
31761915--31761945	11	2.8	11	95	0	53	35	19	19	25	1.95
31767227--31767279	16	3.3	16	100	0	106	37	5	35	20	1.77
31767259--31767349	46	2.0	46	93	4	159	26	4	30	38	1.76
31767259--31767366	46	2.5	44	85	11	145	28	3	31	36	1.75
31767508--31767546	17	2.5	15	84	15	60	61	0	0	38	0.96
31767513--31767546	17	2.0	17	100	0	68	58	0	0	41	0.98
31767579--31767618	20	2.0	21	85	5	55	60	5	0	35	1.19
31775290--31775314	13	1.9	13	100	0	50	32	8	40	20	1.81
31776137--31776193	15	3.5	15	71	17	51	49	1	1	47	1.22
31776711--31776745	18	1.9	18	88	0	52	42	5	0	51	1.25
31778993--31779091	31	3.2	31	82	1	110	22	31	32	14	1.93
31781579--31781606	14	2.0	14	100	0	56	50	0	7	42	1.30
31781593--31781802	48	4.3	48	95	3	357	50	9	6	34	1.59
31784929--31784978	14	3.4	14	86	13	66	0	28	2	70	0.99
31785044--31785121	27	2.9	27	80	0	93	23	29	25	21	1.99
31785167--31785227	31	2.0	31	86	0	86	22	18	26	32	1.97
31785610--31785656	16	3.1	16	91	8	73	19	0	12	68	1.21
31787860--31787905	21	2.2	21	84	0	56	30	0	32	36	1.58
31789077--31789232	28	5.2	28	64	24	86	58	10	4	26	1.51
31789053--31789240	61	3.1	61	100	0	376	57	11	4	26	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31790337--31790363	12	2.2	12	100	0	54	29	51	7	11	1.64
31793771--31794724	475	2.0	475	94	0	1692	31	21	17	28	1.96
31798539--31798579	21	2.0	21	85	9	57	78	2	19	0	0.87
31801088--31801173	30	2.9	30	68	22	72	47	16	12	23	1.80
31802438--31802478	15	2.9	15	89	7	59	63	0	12	24	1.28
31803911--31804042	40	3.3	40	81	3	142	34	19	18	26	1.95
31805825--31805859	17	2.1	17	100	0	70	34	5	11	48	1.63
31807814--31807844	16	1.9	16	100	0	62	35	12	12	38	1.82
31808802--31809136	43	7.8	43	91	2	487	20	19	31	28	1.97
31813510--31813561	24	2.2	24	85	0	68	53	9	3	32	1.51
31813731--31813770	16	2.5	16	91	0	62	30	25	2	42	1.68
31813737--31813774	16	2.5	15	87	8	51	36	23	2	36	1.69
31814219--31814253	6	6.0	6	96	3	63	0	48	0	51	1.00
31815312--31815367	18	3.2	18	70	27	57	67	14	3	14	1.35
31815321--31815373	17	3.1	17	68	10	54	73	9	3	13	1.21
31815293--31815373	34	2.4	34	91	2	126	70	9	4	14	1.31
31817418--31817680	131	2.0	131	96	0	490	29	30	9	30	1.89
31819315--31819344	2	15.0	2	100	0	60	50	0	0	50	1.00
31821834--31821879	24	1.9	24	86	0	65	45	0	2	52	1.13
31822531--31822585	26	2.1	26	86	10	76	65	0	5	29	1.15
31822530--31822599	22	3.0	22	82	14	70	64	0	5	30	1.17
31825297--31825346	15	3.3	15	86	5	66	26	38	16	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31826477--31826753	138	2.0	138	95	2	495	29	24	15	29	1.96
31832724--31832756	15	2.2	15	94	0	57	36	0	6	57	1.23
31836615--31836674	21	2.8	22	82	7	70	25	20	21	33	1.97
31845922--31845976	26	2.1	26	89	0	83	34	9	30	25	1.87
31850585--31850675	43	2.1	43	81	0	101	34	25	9	30	1.88
31850714--31850755	21	2.0	21	85	0	57	30	14	16	38	1.89
31864609--31864701	44	2.1	44	92	4	152	29	10	10	49	1.71
31867367--31867432	33	2.0	33	100	0	132	21	12	27	39	1.88
31874742--31874803	30	2.1	30	93	0	106	29	3	9	58	1.46
31875721--31875857	41	3.3	41	84	7	186	40	2	0	56	1.14
31875734--31875813	31	2.6	31	88	5	110	38	2	0	58	1.11
31876978--31877008	16	1.9	16	93	0	53	38	0	3	58	1.15
31882513--31882549	19	1.9	19	88	0	56	16	5	0	78	0.93
31882539--31882650	57	1.9	58	82	12	142	27	18	8	45	1.77
31882889--31883030	71	2.0	71	94	0	248	27	16	16	38	1.91
31884310--31884691	191	2.0	191	91	2	624	31	17	19	31	1.95
31886232--31886304	22	3.3	22	94	0	128	27	30	0	42	1.56
31886279--31886388	51	2.2	51	96	0	202	29	29	0	41	1.56
31891996--31892346	123	2.8	126	89	3	559	32	22	15	30	1.95
31897168--31897205	13	2.7	15	84	15	55	28	5	2	63	1.30
31897583--31897633	16	3.2	16	88	0	75	45	1	23	29	1.64
31897615--31897710	44	2.1	46	84	7	126	35	3	23	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31897932--31897981	24	2.1	23	82	10	57	60	2	2	36	1.20
31900886--31900952	16	4.2	16	84	0	89	40	4	26	28	1.75
31900931--31901022	46	2.0	44	85	8	123	33	5	22	38	1.77
31901154--31901222	21	3.5	20	70	23	58	46	4	0	49	1.21
31901188--31901239	21	2.4	22	87	6	79	46	11	0	42	1.40
31910586--31910878	62	4.8	60	75	7	198	42	17	16	24	1.88
31910648--31910878	62	3.8	61	78	5	207	43	18	15	23	1.87
31910917--31910976	31	1.9	31	83	6	77	40	15	15	30	1.87
31911932--31911970	18	2.0	20	85	9	55	33	5	0	61	1.18
31923588--31923626	16	2.3	17	82	13	53	76	7	2	12	1.09
31924401--31924442	19	2.2	19	86	0	57	76	0	7	16	1.00
31925246--31926116	44	19.8	44	73	13	318	27	22	19	30	1.98
31925348--31925751	170	2.4	171	91	3	634	28	22	19	29	1.98
31925194--31925771	214	2.7	214	74	10	553	28	21	19	30	1.98
31925628--31926043	136	3.0	136	94	3	701	27	22	20	30	1.98
31925911--31926116	90	2.4	82	83	8	234	27	23	19	29	1.98
31940405--31940438	17	2.1	17	94	5	61	11	11	44	32	1.77
31941567--31941612	3	15.3	3	100	0	92	67	0	0	32	0.91
31942342--31942387	19	2.5	19	80	13	53	78	2	6	13	1.04
31949050--31949095	23	2.1	22	84	8	58	23	30	0	45	1.53
31949047--31949092	11	4.2	11	79	17	51	23	30	0	45	1.53
31951206--31951263	21	2.8	21	79	12	57	29	46	17	6	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31951498--31951545	25	1.9	25	95	0	87	43	0	16	39	1.48
31951418--31951590	69	2.5	66	85	8	213	36	0	13	49	1.47
31954751--31955037	125	2.3	124	88	0	430	28	20	18	32	1.96
31958587--31958714	35	3.6	35	89	1	184	18	9	28	42	1.81
31960086--31960177	43	2.1	44	82	6	116	15	23	36	23	1.93
31963251--31963326	33	2.4	32	84	8	93	21	17	10	51	1.74
31963265--31963334	33	2.1	33	89	0	104	21	17	12	48	1.80
31967204--31967229	3	8.7	3	100	0	52	0	34	0	65	0.93
31976079--31976128	23	2.2	23	82	10	59	36	0	2	62	1.07
31977104--31977431	164	2.0	164	95	0	584	38	12	17	31	1.87
31977462--31977579	45	2.7	45	93	5	197	42	23	22	11	1.85
31978475--31978589	41	2.7	42	86	8	151	46	19	20	14	1.84
31982993--31983027	11	3.2	11	87	0	52	62	5	11	20	1.48
31992937--31993005	30	2.3	29	87	2	93	37	2	0	59	1.12
32003733--32003790	17	3.4	17	69	21	57	25	6	20	46	1.75
32003730--32003800	35	2.0	35	100	0	142	25	5	19	49	1.70
32008282--32008318	18	2.0	20	84	10	51	27	16	5	51	1.66
32012740--32012780	17	2.4	17	88	8	57	41	4	7	46	1.53
32015965--32016052	42	2.1	42	80	4	97	36	18	27	18	1.94
32015994--32016052	21	2.8	20	75	10	64	33	18	30	16	1.94
32015994--32016096	42	2.5	42	80	3	109	37	17	28	16	1.91
32022154--32022390	118	2.0	119	99	0	467	42	24	5	27	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32025013--32025037	5	5.0	5	100	0	50	80	0	0	20	0.72
32029527--32029597	31	2.3	31	82	4	90	45	4	8	42	1.54
32035766--32037240	367	4.0	368	91	1	2386	36	10	13	39	1.79
32046952--32046980	2	14.5	2	100	0	58	51	0	0	48	1.00
32046547--32047437	457	1.9	457	100	0	1782	34	22	12	31	1.90
32047409--32047438	2	15.0	2	100	0	60	50	0	0	50	1.00
32048147--32048229	25	3.3	25	78	8	78	38	22	20	18	1.93
32048147--32048208	27	2.4	25	84	7	72	41	22	17	17	1.90
32049246--32049271	13	2.0	13	100	0	52	23	15	0	61	1.33
32049237--32049275	20	1.9	21	84	5	53	25	12	0	61	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131