genome.fa.s9.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  129  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42595970--42596080	9	12.0	9	72	23	72	29	1	3	64	1.20
42595969--42596021	21	2.7	20	86	13	74	32	1	1	64	1.15
42595970--42596080	26	3.9	27	76	18	102	29	1	3	64	1.20
42596010--42596079	19	3.9	18	79	15	74	28	1	4	65	1.20
42595960--42596075	47	2.5	48	80	10	134	28	2	3	65	1.22
42596240--42596283	21	2.1	21	87	8	63	36	2	2	59	1.23
42596240--42596283	19	2.2	21	84	8	56	36	2	2	59	1.23
42596373--42596402	15	2.0	15	93	0	51	23	0	0	76	0.78
42605142--42605272	41	3.2	41	88	0	190	32	29	19	18	1.95
42612187--42612290	41	2.5	41	81	10	115	27	16	23	32	1.96
42639650--42640037	193	2.0	193	99	0	767	32	7	19	40	1.79
42651129--42651209	16	5.1	16	93	0	144	38	4	37	19	1.74
42659397--42659421	12	2.1	12	100	0	50	44	0	16	40	1.47
42661567--42661624	22	2.6	22	84	7	73	43	17	3	36	1.66
42661580--42661656	21	3.7	19	80	13	73	40	15	6	37	1.73
42661614--42661656	21	2.0	21	95	0	77	39	13	6	39	1.72
42661887--42667296	132	41.0	132	97	0	9525	30	21	18	30	1.97
42667879--42668210	132	2.5	132	94	0	574	30	23	18	28	1.97
42675631--42675688	22	2.6	22	84	7	73	43	17	3	36	1.66
42675644--42675760	19	5.8	19	86	8	126	37	16	9	36	1.81
42675667--42675760	19	4.8	19	90	5	152	36	15	10	37	1.83
42675882--42675937	26	2.2	26	81	15	64	50	3	7	39	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42678352--42678393	20	2.1	20	86	0	57	47	0	7	45	1.30
42682747--42682781	17	2.0	18	88	5	54	48	0	14	37	1.44
42683304--42683373	29	2.3	29	85	4	86	40	14	10	35	1.79
42683513--42683544	11	2.9	11	95	0	55	21	18	9	50	1.75
42684686--42684715	16	1.9	16	93	6	53	23	0	6	70	1.11
42684743--42684782	18	2.2	18	86	8	55	35	0	5	60	1.19
42684743--42684795	18	2.9	17	81	15	54	35	0	5	58	1.22
42687298--42687335	19	2.0	19	100	0	76	42	5	15	36	1.70
42689451--42689535	31	2.8	30	76	11	84	38	9	11	40	1.74
42690895--42690928	15	2.2	16	94	5	61	23	0	5	70	1.09
42690954--42691004	18	2.9	17	80	8	57	37	0	3	58	1.16
42696775--42696812	20	1.9	20	84	10	51	28	13	2	55	1.51
42699230--42699256	6	4.5	6	100	0	54	70	0	29	0	0.88
42700556--42700604	25	2.0	24	88	4	71	48	4	26	20	1.67
42702549--42702717	14	11.8	14	69	13	58	20	1	33	44	1.62
42702612--42702660	14	3.4	14	88	5	71	20	0	32	46	1.51
42702607--42702660	7	7.6	7	77	4	54	22	0	29	48	1.51
42702607--42702747	64	2.2	64	79	10	155	19	1	35	43	1.60
42702769--42702801	16	2.1	16	88	11	50	42	0	0	57	0.98
42702820--42702871	26	2.0	26	88	7	79	32	11	19	36	1.87
42703042--42703095	21	2.5	21	80	11	65	24	0	42	33	1.55
42703041--42703103	14	4.4	14	75	11	56	23	0	41	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42703039--42703129	22	4.3	21	74	8	87	23	0	41	35	1.54
42703417--42703478	29	2.1	29	93	0	106	43	9	8	38	1.67
42708275--42708587	43	7.3	42	84	4	369	26	19	28	25	1.99
42708262--42708587	128	2.6	127	85	2	429	26	19	28	25	1.99
42708275--42708587	85	3.7	85	87	0	428	26	19	28	25	1.99
42710376--42710419	22	2.0	22	95	0	79	22	15	9	52	1.71
42711941--42712238	36	8.2	35	67	15	135	41	20	20	16	1.90
42711977--42712238	36	7.2	35	71	11	197	41	20	20	17	1.90
42711941--42712238	73	4.1	74	90	3	437	41	20	20	16	1.90
42719311--42719491	45	4.0	45	100	0	362	33	28	11	27	1.91
42726958--42726988	2	15.5	2	100	0	62	48	0	0	51	1.00
42730029--42730062	2	16.0	2	88	11	50	47	0	5	47	1.26
42730567--42730619	26	2.1	26	82	10	65	30	0	15	54	1.41
42731766--42731815	20	2.5	20	80	0	55	30	4	18	48	1.66
42732252--42732313	31	2.0	31	83	0	79	38	4	19	37	1.73
42736262--42736468	44	4.4	44	64	22	107	43	4	2	48	1.37
42736207--42736501	145	2.0	146	99	0	583	44	5	3	46	1.43
42745926--42746035	41	2.7	41	84	2	114	30	21	18	29	1.97
42747272--42747317	25	1.9	23	83	16	58	39	13	0	47	1.42
42748538--42748817	91	3.1	90	77	3	296	31	12	24	31	1.93
42750312--42750356	15	2.8	17	75	21	51	55	4	4	35	1.40
42758171--42758234	29	2.2	29	91	2	103	42	6	0	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42759444--42759504	27	2.3	27	91	0	95	13	31	24	31	1.93
42759524--42759562	19	2.1	19	85	9	53	5	2	12	79	1.00
42759555--42759617	26	2.4	27	89	2	92	49	0	9	41	1.35
42761070--42761132	28	2.2	29	80	5	76	30	25	19	25	1.98
42761172--42761296	45	2.8	45	73	16	123	31	24	12	31	1.93
42761279--42761384	23	4.5	23	68	7	61	27	16	16	39	1.90
42761394--42761476	28	3.0	27	72	10	71	32	24	21	21	1.98
42763528--42763552	7	3.6	7	100	0	50	12	0	0	88	0.53
42770803--42770892	37	2.4	37	85	5	110	28	37	14	18	1.91
42772935--42773179	122	2.0	122	95	0	436	26	30	16	26	1.97
42776151--42776190	18	2.2	19	86	8	57	45	5	2	47	1.38
42777786--42777824	7	5.6	7	82	11	53	69	0	17	12	1.19
42777786--42777830	20	2.2	21	84	4	56	68	0	17	13	1.20
42779142--42780167	89	11.6	89	88	3	1461	31	17	22	27	1.97
42784974--42785002	4	7.2	4	100	0	58	24	0	27	48	1.51
42796828--42796889	25	2.4	25	81	10	63	14	11	4	69	1.34
42801989--42802014	6	4.3	6	100	0	52	30	15	34	19	1.93
42818978--42819019	16	2.6	16	92	0	66	42	7	2	47	1.43
42818993--42819054	23	2.7	23	82	2	72	48	1	1	48	1.21
42820198--42820270	3	24.3	3	87	0	101	32	4	1	61	1.23
42824678--42824704	7	3.9	7	100	0	54	88	0	0	11	0.50
42824732--42824775	6	7.0	6	90	10	70	81	0	18	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42824855--42824966	43	2.6	45	80	7	115	32	13	27	26	1.94
42826083--42827141	50	21.2	50	71	6	635	32	25	19	22	1.97
42826083--42827120	100	10.4	100	85	2	1075	32	25	19	22	1.97
42828634--42828710	30	2.6	28	70	11	73	14	18	10	57	1.65
42828746--42828815	3	23.3	3	86	0	95	32	4	1	61	1.24
42832621--42832655	18	1.9	18	88	0	52	28	0	17	54	1.43
42838200--42838238	18	2.2	17	86	13	53	33	0	20	46	1.51
42838451--42838525	23	3.3	23	92	0	123	17	21	26	34	1.95
42843348--42843376	14	2.0	15	93	6	51	27	3	13	55	1.55
42843705--42843744	20	2.0	20	90	0	62	27	10	12	50	1.72
42843690--42843756	34	1.9	35	90	3	109	31	8	13	46	1.74
42843684--42843760	14	5.0	15	71	20	52	33	9	14	42	1.77
42851957--42852160	101	2.0	102	99	0	401	46	10	6	35	1.66
42853464--42853511	3	16.3	3	91	4	80	2	33	0	64	1.05
42863788--42863822	10	3.2	11	88	12	54	20	34	0	45	1.51
42863815--42863862	12	4.2	12	78	10	64	29	33	0	37	1.58
42863827--42863868	22	1.9	22	100	0	84	28	33	0	38	1.58
42863792--42863874	34	2.5	33	81	12	107	27	32	0	39	1.57
42864379--42864410	12	2.6	13	90	9	50	21	12	18	46	1.82
42864478--42864538	19	3.1	19	77	13	70	52	8	1	37	1.41
42864905--42864933	2	15.0	2	92	7	51	48	0	0	51	1.00
42865082--42865107	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42869617--42869658	14	2.9	14	80	16	50	45	2	2	50	1.27
42871048--42871083	2	18.0	2	100	0	72	50	0	0	50	1.00
42871137--42871205	31	2.2	31	89	0	102	36	8	14	40	1.77
42874422--42874533	57	2.0	57	91	5	174	44	7	47	0	1.30
42881232--42881273	22	1.9	22	85	9	59	19	16	9	54	1.69
42885760--42885797	19	2.0	19	94	0	67	55	0	7	36	1.29
42885766--42885848	23	3.7	23	71	7	64	49	2	7	40	1.43
42886235--42886300	3	22.0	3	93	0	105	62	0	4	33	1.16
42888095--42888130	18	2.0	18	88	0	54	33	22	16	27	1.95
42887966--42888304	169	2.0	170	99	0	671	33	17	13	34	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131