genome.fa.s9.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  125  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41230316--41230345	14	2.1	14	100	0	60	40	13	26	20	1.89
41233587--41233807	111	2.0	111	98	0	424	32	16	17	33	1.93
41235666--41235698	17	1.9	17	88	11	50	18	0	6	75	1.00
41241962--41242023	29	2.1	28	85	5	79	24	14	16	45	1.84
41244820--41244862	18	2.3	19	88	4	61	53	0	23	23	1.46
41244820--41244863	19	2.4	18	88	3	61	52	0	22	25	1.48
41251799--41251903	43	2.4	43	81	9	124	28	27	18	25	1.98
41252803--41252859	28	2.0	28	90	6	89	38	5	0	56	1.22
41254687--41254744	24	2.4	24	91	0	98	34	10	24	31	1.89
41255285--41255677	44	8.6	44	73	11	231	30	19	21	28	1.98
41255194--41255784	230	2.6	230	89	0	896	30	17	21	29	1.97
41255510--41255713	88	2.3	91	80	8	213	30	17	21	29	1.96
41257449--41257479	9	3.4	9	90	0	53	25	12	22	38	1.90
41257533--41257569	9	4.1	9	92	0	65	45	13	10	29	1.77
41258330--41258412	42	1.9	43	85	9	116	37	6	1	55	1.32
41258800--41258942	72	2.0	72	93	2	243	27	18	18	34	1.95
41263306--41263412	25	4.3	25	90	0	151	16	28	20	34	1.95
41263324--41263422	50	2.0	49	87	2	126	19	25	20	35	1.95
41271177--41271465	43	6.7	43	94	2	474	21	21	28	29	1.98
41274551--41274583	16	2.1	16	100	0	66	18	18	12	51	1.76
41274627--41274656	16	1.9	15	93	6	51	30	13	3	53	1.56
41276593--41276741	69	2.2	68	85	1	190	39	6	16	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41278461--41278529	33	2.1	33	89	5	104	28	26	0	44	1.54
41278465--41278529	11	5.9	11	82	8	71	29	27	0	43	1.56
41278526--41278582	29	2.0	29	86	6	80	38	3	5	52	1.41
41280638--41280686	21	2.3	21	82	6	64	30	40	22	6	1.78
41280950--41281070	61	2.0	61	86	0	170	30	10	4	53	1.56
41284109--41284427	126	2.5	126	93	1	541	26	22	19	31	1.97
41284631--41284657	11	2.5	11	100	0	54	44	0	0	55	0.99
41297383--41297412	7	4.1	7	95	4	51	53	0	0	46	1.00
41300393--41300423	9	3.4	9	90	0	53	25	12	22	38	1.90
41301356--41301381	5	5.2	5	100	0	52	19	19	19	42	1.90
41308069--41308179	45	2.5	45	89	0	168	28	18	10	41	1.85
41310028--41310086	21	2.8	20	85	10	75	72	3	0	23	0.99
41310078--41310120	20	2.2	20	84	8	54	67	2	4	25	1.22
41310943--41311009	30	2.2	31	81	10	75	59	1	5	32	1.31
41311855--41311989	40	3.4	40	77	5	121	37	22	23	16	1.94
41312028--41312306	41	6.8	41	78	4	296	17	24	23	34	1.96
41312027--41312306	82	3.4	82	90	0	427	17	24	23	34	1.96
41312030--41312346	123	2.6	123	81	5	313	17	23	23	35	1.96
41312027--41312346	82	3.9	82	85	5	389	17	24	22	35	1.96
41314870--41314921	27	1.9	27	84	0	68	42	0	9	48	1.36
41322564--41322921	43	8.3	43	80	6	298	28	20	20	30	1.98
41322625--41322940	42	7.3	43	81	6	336	27	22	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41324914--41325138	111	2.0	112	99	0	443	52	14	4	28	1.60
41325512--41325558	25	2.0	23	83	8	58	25	8	2	63	1.34
41329200--41329233	17	2.1	17	94	5	61	41	0	0	58	0.98
41334333--41334374	19	2.3	19	79	4	50	57	0	7	35	1.26
41335836--41335877	16	2.6	16	96	0	75	28	0	35	35	1.58
41340195--41340236	16	2.6	16	78	17	50	47	7	2	42	1.43
41346409--41346490	3	27.3	3	85	9	114	32	3	0	63	1.12
41346670--41346708	16	2.4	16	91	0	60	17	2	2	76	1.01
41360450--41360680	46	5.0	46	86	3	313	29	24	8	37	1.84
41360450--41360680	92	2.5	92	89	0	354	29	24	8	37	1.84
41361044--41361068	12	2.1	12	100	0	50	24	36	24	16	1.94
41361229--41361304	9	8.4	9	89	0	116	40	22	11	25	1.88
41361229--41361304	27	2.8	27	93	0	134	40	22	11	25	1.88
41361344--41361391	6	7.7	6	88	9	60	20	0	10	68	1.18
41361328--41361391	20	3.3	19	82	10	67	21	3	10	64	1.40
41365542--41365590	21	2.3	22	85	3	64	59	8	6	26	1.50
41371058--41371082	5	5.0	5	100	0	50	20	0	0	80	0.72
41376701--41376818	3	37.0	3	76	14	94	60	2	5	32	1.32
41376706--41376853	73	2.0	73	100	0	296	56	4	8	31	1.47
41388838--41388868	11	2.9	11	95	4	55	67	0	0	32	0.91
41404252--41404329	36	2.2	36	81	9	88	48	1	10	39	1.45
41419318--41419384	34	1.9	35	93	3	118	32	5	11	49	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41419644--41419679	17	2.1	17	100	0	72	36	5	52	5	1.48
41421981--41422117	65	2.1	66	97	2	260	48	2	8	40	1.49
41427833--41427993	51	3.3	51	82	11	228	29	23	14	32	1.94
41427885--41427999	44	2.6	44	95	0	203	29	23	15	31	1.95
41436937--41437039	43	2.4	44	85	3	138	27	20	23	29	1.99
41448916--41448991	19	4.0	19	87	0	116	39	9	11	39	1.74
41449285--41449338	26	2.2	26	83	6	67	22	3	1	72	1.10
41455029--41455104	37	2.1	37	97	0	143	27	21	28	22	1.99
41462227--41462263	6	6.0	6	96	3	65	32	48	18	0	1.49
41464329--41464390	21	3.0	20	76	9	54	61	6	3	29	1.37
41465863--41465934	32	2.2	32	97	0	135	40	15	5	38	1.70
41465930--41465960	13	2.5	13	94	5	55	41	12	0	45	1.42
41467924--41468065	72	2.0	72	92	0	239	36	18	12	32	1.88
41469841--41469936	48	2.0	48	100	0	192	20	22	14	41	1.89
41472552--41472599	25	1.9	25	82	0	60	25	6	14	54	1.63
41473836--41473927	20	4.8	18	76	12	69	39	3	3	54	1.33
41473835--41473903	9	7.2	9	76	12	66	37	1	1	59	1.15
41473833--41473903	19	3.7	19	79	9	81	38	1	1	59	1.15
41474363--41474404	22	1.9	22	90	9	68	38	11	0	50	1.40
41475526--41475567	18	2.3	18	84	8	50	50	0	2	47	1.14
41476527--41476554	2	14.0	2	100	0	56	50	0	0	50	1.00
41478215--41478252	10	3.8	10	82	10	51	0	23	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41478330--41478373	21	2.1	21	86	0	61	0	2	54	43	1.12
41478342--41478368	9	3.0	9	100	0	54	0	0	55	44	0.99
41480075--41480101	14	1.9	14	100	0	54	59	0	0	40	0.98
41480126--41480179	6	8.5	6	81	6	54	14	5	1	77	1.03
41492830--41492888	30	2.0	30	93	6	102	61	10	0	28	1.29
41492839--41492903	17	4.1	17	67	18	50	64	7	0	27	1.20
41499120--41499203	3	27.7	3	90	2	132	65	0	3	30	1.10
41503875--41503907	17	1.9	17	100	0	66	42	6	27	24	1.78
41513694--41513912	68	3.2	68	98	0	420	30	24	19	26	1.98
41514490--41514930	220	2.0	220	97	0	828	24	14	22	38	1.92
41521719--41521754	3	12.3	3	88	5	56	66	0	2	30	1.06
41523357--41524018	132	5.0	132	91	0	1040	27	24	19	27	1.99
41523417--41524006	44	13.4	44	63	11	159	27	24	20	27	1.99
41524012--41524372	50	7.3	50	71	3	289	24	24	20	29	1.99
41524037--41524375	100	3.4	100	91	4	553	24	25	21	28	1.99
41524494--41524602	40	2.6	41	76	13	109	30	24	20	24	1.99
41532764--41532805	3	14.3	3	90	5	68	66	0	2	30	1.04
41534003--41534031	3	9.7	3	100	0	58	31	0	0	68	0.89
41539187--41539215	13	2.1	14	93	6	51	82	0	0	17	0.66
41540174--41540213	18	2.2	19	90	4	64	75	5	7	12	1.18
41542002--41542057	13	4.5	13	80	13	73	46	14	1	37	1.55
41542000--41542043	23	1.9	23	100	0	88	45	18	0	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41543117--41543192	30	2.6	30	82	2	100	30	22	6	40	1.79
41543136--41543216	30	2.7	30	82	3	92	32	19	6	41	1.76
41543722--41543782	19	3.2	19	82	13	63	72	0	24	3	1.00
41543717--41543780	27	2.3	29	83	8	87	70	0	26	3	1.02
41543717--41543771	4	14.2	4	80	14	62	70	0	25	3	1.03
41544042--41544085	23	1.9	23	85	0	61	81	0	18	0	0.68
41544541--41544683	17	8.3	17	77	14	132	32	13	11	42	1.80
41544535--41544699	35	4.7	35	77	8	174	32	12	10	44	1.76
41548059--41548095	4	9.8	4	82	11	51	27	18	2	51	1.60
41559618--41559649	16	1.9	17	93	6	57	37	21	0	40	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131