genome.fa.s9.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  58  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18885205--18885296	20	4.9	20	84	5	81	40	26	9	23	1.86
18892095--18892137	7	6.0	7	81	13	52	65	2	18	13	1.38
18892099--18892145	13	3.5	13	78	16	51	63	2	19	14	1.40
18893426--18893654	44	5.2	44	95	0	404	34	13	24	27	1.93
18893739--18894063	44	7.4	44	83	6	365	32	14	24	28	1.94
18895546--18895592	24	2.0	24	87	8	69	31	10	0	57	1.33
18895546--18895583	12	3.2	12	82	10	51	34	10	0	55	1.34
18900256--18900286	11	2.8	11	95	0	53	77	3	6	12	1.08
18905301--18905334	11	3.1	11	91	0	59	64	0	5	29	1.17
18905348--18905411	20	3.3	20	76	8	60	67	3	6	23	1.28
18910562--18910592	11	2.8	11	95	0	53	77	3	6	12	1.08
18915607--18915640	11	3.1	11	91	0	59	64	0	5	29	1.17
18915654--18915717	20	3.3	20	76	8	60	67	3	6	23	1.28
18915940--18916006	4	16.8	4	87	0	53	38	22	10	28	1.87
18916375--18916440	28	2.4	28	82	5	80	31	3	1	63	1.19
18916409--18916462	21	2.6	21	82	8	58	27	3	1	66	1.19
18916440--18916507	19	3.5	19	78	4	66	32	4	0	63	1.14
18916450--18916505	29	1.9	29	85	0	76	35	3	0	60	1.14
18916898--18916940	22	2.0	22	85	0	59	18	18	25	37	1.94
18917949--18917995	19	2.5	19	80	10	53	48	8	8	34	1.64
18918246--18918290	22	2.2	20	84	8	54	40	4	20	35	1.72
18924453--18924530	27	2.8	28	78	7	79	26	6	5	61	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18924552--18924628	32	2.5	29	79	10	82	37	6	1	54	1.35
18924547--18924707	79	2.0	80	98	1	315	36	7	1	54	1.36
18924694--18924741	19	2.5	20	76	6	55	33	4	4	58	1.36
18924632--18924716	32	2.8	30	77	11	93	36	5	1	56	1.31
18926830--18926860	11	2.8	11	100	0	62	58	0	0	41	0.98
18936389--18936426	18	2.1	18	90	0	58	47	0	2	50	1.15
18944854--18944878	13	1.9	13	100	0	50	12	8	0	80	0.92
18944894--18944934	20	2.0	20	90	9	66	0	17	2	80	0.82
18945298--18945346	22	2.2	22	92	0	80	14	30	34	20	1.92
18948795--18948845	9	6.2	8	80	14	52	27	0	0	72	0.85
18948785--18948824	19	2.0	20	85	4	55	25	2	2	70	1.13
18948795--18948833	3	12.7	3	89	10	53	28	0	0	71	0.86
18971561--18971673	29	3.9	29	88	0	154	26	18	15	39	1.90
18978338--18978380	21	2.0	21	90	0	68	30	4	18	46	1.69
18979949--18979992	20	2.2	20	84	8	54	40	6	0	52	1.28
18990375--18990433	21	2.8	21	73	21	59	59	1	10	28	1.40
18991815--18991848	16	2.0	18	88	11	54	2	0	82	14	0.79
18991816--18991863	25	1.9	25	83	8	62	8	0	81	10	0.88
18991876--18991908	9	3.7	9	91	0	57	30	12	15	42	1.83
18991962--18991992	9	3.4	9	90	0	53	38	22	12	25	1.90
18994772--18994991	94	2.3	94	88	3	307	26	24	16	32	1.96
18994878--18994931	27	2.0	27	81	0	63	22	29	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18998544--18998643	49	2.0	49	88	0	146	31	7	13	49	1.68
19004006--19004042	19	1.9	19	88	0	56	29	32	13	24	1.93
19009270--19009316	24	2.0	24	91	0	76	27	31	17	23	1.96
19009278--19009324	24	2.0	24	86	0	67	27	31	17	23	1.96
19011895--19011944	24	2.0	25	85	11	68	64	0	2	34	1.05
19014167--19014216	21	2.6	19	73	14	50	40	4	2	54	1.31
19014573--19014846	136	2.0	136	99	0	539	31	6	5	56	1.47
19015970--19016002	2	16.5	2	93	0	57	48	0	3	48	1.17
19016021--19016133	56	2.0	57	98	1	219	24	20	21	33	1.97
19036275--19036316	20	2.2	19	83	12	50	61	2	19	16	1.44
19036756--19036785	16	1.9	16	93	6	53	30	0	20	50	1.49
19046240--19046345	51	2.1	51	100	0	212	12	11	11	65	1.49
19046519--19046557	15	2.5	15	88	12	53	20	2	2	74	1.06
19053338--19053494	44	3.6	44	80	3	181	34	18	19	28	1.95
19053331--19053736	95	4.4	91	76	11	312	34	16	20	27	1.95
19053458--19053740	95	3.0	96	86	1	390	34	16	21	27	1.95
19053534--19053673	44	2.9	52	67	18	129	35	17	19	27	1.95
19053656--19053770	45	2.7	41	82	5	131	30	17	24	27	1.97
19053659--19053770	41	2.6	41	81	5	116	29	17	25	27	1.98
19053755--19053858	45	2.3	44	80	1	118	30	11	25	31	1.91
19053944--19054022	39	2.0	39	97	0	149	30	17	18	32	1.95
19054962--19055000	15	2.5	16	84	16	55	20	2	0	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19055062--19055145	18	4.8	17	70	20	57	20	4	3	71	1.19
19055063--19055145	27	3.1	26	76	11	80	19	4	3	72	1.18
19055072--19055114	21	2.0	22	82	8	54	18	4	4	72	1.20
19070415--19070487	34	2.2	34	85	2	94	47	10	12	28	1.75
19070427--19070490	17	3.8	17	80	14	69	48	12	10	28	1.75
19070480--19070532	20	2.7	21	80	11	60	35	9	15	39	1.79
19070480--19070532	19	2.7	19	80	11	63	35	9	15	39	1.79
19070480--19070540	21	3.1	19	77	13	61	36	8	14	40	1.76
19070460--19070604	74	2.0	74	89	8	224	42	11	11	35	1.77
19070520--19070564	17	2.6	17	82	0	54	51	6	11	31	1.63
19070669--19070820	18	8.7	17	69	12	67	45	7	13	34	1.71
19070786--19070821	17	2.1	18	94	5	65	55	11	11	22	1.66
19071618--19071668	28	1.9	26	88	11	77	11	29	43	15	1.82
19071875--19071946	4	18.5	4	78	13	71	0	20	0	79	0.74
19071877--19071949	28	2.6	28	85	12	98	0	21	0	78	0.76
19071875--19071933	9	6.6	9	75	19	52	0	20	0	79	0.73
19071884--19071945	20	3.0	20	88	11	81	0	22	0	77	0.77
19071875--19071949	35	2.2	34	88	7	107	0	21	0	78	0.75
19072416--19072518	29	3.5	29	77	2	89	36	1	21	39	1.65
19072950--19073324	42	9.0	41	83	3	369	37	22	18	21	1.94
19072985--19073332	125	2.8	126	83	5	429	37	23	17	21	1.94
19086741--19086773	17	1.9	17	100	0	66	18	42	9	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19092327--19092371	23	1.9	24	90	4	74	15	0	11	73	1.10
19093208--19093251	20	2.2	20	84	8	54	15	29	29	25	1.96
19099624--19099676	23	2.3	23	86	0	79	22	16	28	32	1.96
19110543--19110575	18	1.9	17	88	11	50	48	15	12	24	1.78
19114733--19114789	20	2.8	20	79	10	71	31	14	31	22	1.93
19114652--19114869	120	1.8	119	90	1	355	33	16	29	20	1.94
19114624--19114891	120	2.3	119	80	2	351	34	16	29	20	1.94
19114624--19114893	40	6.8	40	83	2	303	34	16	28	20	1.94
19114624--19114928	120	2.6	120	80	3	312	34	16	28	20	1.94
19114624--19114933	40	7.8	40	82	2	187	34	16	28	21	1.94
19114624--19114933	80	3.9	80	81	1	320	34	16	28	21	1.94
19130044--19130069	9	2.9	9	100	0	52	65	0	34	0	0.93
19131684--19131728	19	2.3	20	92	3	74	51	15	13	20	1.76
19134931--19134955	12	2.1	12	100	0	50	16	8	32	44	1.76
19136433--19136497	30	2.2	30	83	10	80	40	21	0	38	1.54
19136460--19136497	14	2.5	15	83	8	51	42	18	0	39	1.50
19139504--19139556	25	2.2	24	82	3	61	52	0	3	43	1.19
19139510--19139567	14	4.4	14	77	16	54	55	0	5	39	1.22
19143107--19143141	18	1.9	18	94	0	61	17	22	0	60	1.37
19145219--19145248	6	5.0	6	91	0	51	63	0	20	16	1.31
19146693--19146869	39	4.5	39	85	0	237	44	21	3	29	1.70
19148824--19148867	23	1.9	23	90	9	72	20	0	47	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19157782--19157846	28	2.3	28	89	0	94	20	30	16	32	1.95
19167397--19167681	144	2.0	144	98	0	552	35	20	9	34	1.86
19169391--19169466	12	6.4	12	85	11	104	43	0	0	56	0.99
19169391--19169461	5	12.4	5	76	24	61	43	0	0	56	0.99
19169391--19169466	24	3.2	24	96	1	136	43	0	0	56	0.99
19169393--19169498	6	18.7	6	71	23	70	43	0	0	54	1.13
19171612--19171663	22	2.3	23	86	3	70	38	0	0	61	0.96
19171612--19171663	23	2.3	22	83	9	61	38	0	0	61	0.96
19171649--19172210	280	2.0	281	99	0	1117	47	14	7	30	1.72
19180823--19180858	19	1.9	19	88	5	56	55	5	2	36	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131