genome.fa.s9.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  101  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33453522--33453784	51	5.2	51	95	0	429	28	24	15	31	1.96
33467801--33467857	26	2.2	26	93	0	96	42	17	12	28	1.85
33469379--33469416	16	2.4	16	90	0	58	52	2	7	36	1.45
33471422--33471827	132	3.1	133	90	1	627	26	23	18	31	1.97
33471931--33473512	100	15.8	100	85	3	1908	23	20	23	32	1.98
33471931--33473512	200	7.9	199	86	2	2102	23	20	23	32	1.98
33471985--33473507	400	3.8	400	94	0	2605	23	20	23	32	1.98
33474894--33474930	16	2.2	17	95	4	67	2	16	0	81	0.81
33478213--33478250	16	2.4	16	90	0	58	52	2	7	36	1.45
33478540--33479542	507	2.0	511	95	1	1836	50	8	15	25	1.72
33480923--33480969	23	2.1	22	84	4	58	53	2	0	44	1.12
33480915--33480969	21	2.5	22	80	14	60	54	3	0	41	1.18
33480945--33481000	28	2.0	28	86	6	78	53	0	1	44	1.11
33481091--33481166	9	8.0	9	73	11	53	76	2	0	21	0.91
33481408--33481467	31	1.9	31	90	6	95	25	6	1	66	1.25
33481499--33481536	19	2.0	20	89	5	60	34	5	0	60	1.19
33481501--33481548	18	2.5	19	80	6	53	37	4	4	54	1.39
33488109--33488165	30	1.9	30	89	3	89	35	22	3	38	1.72
33488125--33488189	30	2.2	30	83	2	78	38	23	3	35	1.70
33488528--33488589	10	5.8	10	75	17	54	80	4	12	1	0.94
33488535--33488589	20	2.6	22	83	8	71	81	5	12	0	0.84
33488687--33488751	8	8.4	8	83	14	75	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33488685--33488752	16	4.3	16	87	10	95	79	0	20	0	0.73
33488685--33488745	12	5.4	12	75	15	67	78	0	21	0	0.75
33488857--33488890	17	2.0	17	88	11	52	76	8	14	0	1.01
33489025--33489089	6	11.2	6	72	18	57	80	0	20	0	0.72
33489033--33489091	9	6.4	9	75	9	57	81	0	18	0	0.69
33489027--33489071	24	1.9	23	90	4	72	84	0	15	0	0.62
33489025--33489090	18	3.8	18	90	4	100	80	0	19	0	0.72
33489212--33489281	23	3.0	22	73	22	63	28	0	2	68	1.04
33489437--33489499	18	3.2	20	82	6	67	39	14	9	36	1.78
33489441--33489499	20	3.1	19	80	9	66	37	15	10	37	1.81
33489637--33489986	18	19.4	18	71	16	194	31	12	11	45	1.77
33489637--33489858	35	6.3	34	75	14	166	31	13	10	44	1.78
33489777--33489857	17	4.7	16	76	13	63	28	14	12	44	1.82
33489958--33490028	37	1.9	37	85	5	99	38	7	9	45	1.65
33491026--33491299	152	1.8	151	89	2	433	44	11	10	32	1.76
33496030--33496122	21	4.1	21	74	14	78	68	6	0	24	1.12
33496059--33496122	7	8.4	8	76	20	57	71	4	0	23	1.04
33496360--33496419	31	1.9	31	90	6	95	25	6	1	66	1.25
33496451--33496488	19	2.0	20	89	5	60	34	5	0	60	1.19
33496453--33496500	18	2.5	19	80	6	53	37	4	4	54	1.39
33498326--33499025	348	2.0	349	96	0	1303	27	26	19	26	1.99
33502163--33502190	12	2.3	12	100	0	56	46	0	14	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33512477--33512512	18	1.9	19	88	5	56	33	0	0	66	0.92
33515782--33515838	26	2.2	26	93	0	96	42	17	12	28	1.85
33516751--33516826	9	8.0	9	73	11	53	76	2	0	21	0.91
33520991--33521281	161	1.8	161	91	1	485	46	10	9	33	1.70
33525972--33526004	11	2.9	12	86	13	52	33	0	0	66	0.92
33526101--33526163	30	2.1	30	93	0	108	57	14	3	25	1.52
33526460--33526492	11	2.9	12	86	13	52	33	0	0	66	0.92
33532604--33532667	3	21.3	3	83	0	83	67	1	3	28	1.15
33532604--33532668	15	4.3	15	88	0	94	67	1	3	27	1.14
33534352--33534474	45	2.8	44	81	3	149	26	26	21	26	1.99
33543513--33543552	20	2.0	20	95	0	71	32	15	22	30	1.94
33545558--33545642	43	2.0	44	97	2	163	29	31	9	29	1.88
33547066--33547129	3	21.3	3	83	0	83	67	1	3	28	1.15
33547066--33547130	15	4.3	15	88	0	94	67	1	3	27	1.14
33549143--33549195	27	1.9	28	84	3	72	62	1	3	32	1.24
33549143--33549196	28	1.9	28	81	7	65	62	1	3	31	1.23
33551571--33551768	3	66.0	3	75	5	159	32	6	2	58	1.36
33558426--33558586	25	6.5	25	68	16	79	21	25	19	33	1.97
33558435--33558500	26	2.6	25	78	4	69	18	24	21	36	1.95
33558542--33558648	49	2.2	49	78	6	119	21	28	18	30	1.97
33558615--33558671	25	2.3	25	82	14	73	22	31	19	26	1.98
33562613--33562670	23	2.5	24	77	2	64	31	1	1	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33563751--33563784	3	11.7	3	87	6	52	35	0	0	64	0.94
33563751--33563789	14	2.9	14	88	7	55	33	0	2	64	1.08
33563804--33563834	16	1.9	16	93	0	53	48	3	0	48	1.17
33564613--33564783	93	1.8	94	85	8	242	30	14	12	42	1.82
33575270--33575422	50	3.0	50	86	5	218	38	1	8	51	1.41
33575270--33575422	52	3.0	51	88	3	220	38	1	8	51	1.41
33576186--33576221	16	2.3	15	86	9	54	19	2	8	69	1.27
33584790--33584832	22	1.9	23	90	4	70	25	9	25	39	1.85
33592879--33592910	13	2.6	13	90	9	50	40	6	9	43	1.62
33594833--33594895	28	2.3	27	78	10	67	46	11	1	41	1.49
33594852--33594897	15	3.3	14	82	8	58	41	10	0	47	1.38
33595963--33596014	24	2.2	24	82	0	59	48	5	5	40	1.51
33597476--33597504	5	5.8	5	100	0	58	82	0	0	17	0.66
33598651--33598722	35	2.1	34	82	10	83	30	0	9	59	1.29
33602760--33603231	231	2.0	230	84	5	605	22	18	23	36	1.95
33614327--33614434	55	1.9	58	81	9	134	24	7	11	57	1.58
33621445--33621478	17	2.0	17	88	0	50	29	8	5	55	1.54
33623226--33623270	4	11.5	4	85	4	65	71	0	4	24	1.05
33625566--33625603	12	3.1	12	85	14	51	73	0	0	26	0.83
33625566--33625601	13	2.8	13	91	4	56	75	0	0	25	0.81
33625990--33626036	24	2.0	24	83	8	60	19	25	6	48	1.72
33631543--33631616	29	2.6	29	79	10	80	60	0	1	37	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33631655--33631714	17	3.5	16	76	19	59	23	3	0	73	0.98
33631830--33631883	28	1.9	28	85	7	74	31	1	1	64	1.14
33631831--33631890	18	3.2	18	76	4	66	26	1	1	70	1.07
33631904--33631934	8	3.9	8	100	0	62	48	0	0	51	1.00
33632030--33632193	87	1.9	86	89	3	258	29	7	21	40	1.81
33635290--33635318	10	2.9	10	100	0	58	72	0	10	17	1.11
33638684--33638730	23	2.1	21	84	7	58	48	2	0	48	1.13
33649033--33649088	24	2.4	23	77	11	60	33	0	1	64	1.04
33652303--33652340	19	2.1	19	85	14	53	76	0	5	18	0.97
33653225--33653293	18	4.4	16	72	18	56	59	0	4	36	1.17
33656478--33656502	5	5.0	5	100	0	50	0	60	40	0	0.97
33656523--33656588	11	6.4	11	72	21	54	54	1	1	42	1.18
33656522--33656617	39	2.4	40	87	1	149	57	1	2	39	1.17
33656572--33656605	17	2.0	17	88	0	50	64	0	0	35	0.94
33660046--33660104	20	2.8	21	79	10	66	54	1	3	40	1.27
33664306--33664363	20	3.0	20	78	16	59	56	0	3	39	1.16
33664318--33664384	20	3.6	18	78	10	55	55	1	5	37	1.34
33664350--33664383	17	1.9	18	88	5	52	58	2	8	29	1.43
33667277--33667457	89	2.0	90	98	1	355	49	4	7	37	1.53
33673472--33673502	2	15.5	2	93	0	53	54	0	0	45	0.99
33673561--33673632	28	2.5	29	74	19	71	54	5	5	34	1.47
33674281--33674328	18	2.7	18	75	15	55	77	0	8	14	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33678097--33678393	44	6.8	44	70	8	176	28	21	18	31	1.97
33678062--33678420	175	2.1	175	91	0	583	28	21	19	30	1.97
33678886--33679925	88	12.0	88	89	3	1078	25	25	22	26	2.00
33678925--33679664	44	16.9	44	65	15	297	24	25	23	26	2.00
33679612--33679920	43	7.2	43	60	16	122	24	25	22	26	2.00
33682298--33682413	6	19.8	6	74	16	57	12	6	8	71	1.30
33682333--33682395	21	3.1	21	84	8	69	9	6	6	77	1.11
33686800--33686871	28	2.5	29	74	19	71	54	5	5	34	1.47
33687516--33687563	18	2.7	18	75	15	55	77	0	8	14	0.99
33690214--33690557	124	2.8	124	90	2	546	29	17	20	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131