genome.fa.s9.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  31  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10006421--10006650	40	5.8	40	82	2	248	34	18	29	17	1.94
10006470--10006650	20	9.1	20	64	9	91	33	19	29	17	1.94
10006452--10006650	80	2.5	79	87	1	281	33	18	29	18	1.95
10006429--10006648	120	1.8	120	85	1	307	33	18	30	17	1.94
10013100--10013144	22	2.0	22	95	0	81	31	20	8	40	1.83
10016655--10016723	20	3.4	20	92	4	120	72	11	14	1	1.19
10022555--10022619	32	2.1	32	97	2	123	30	9	12	47	1.72
10023392--10023461	35	2.0	35	100	0	140	31	5	40	22	1.78
10023567--10023630	31	2.1	31	96	0	119	46	7	12	32	1.70
10023711--10024172	46	10.0	46	97	1	845	40	8	22	28	1.84
10023711--10024172	185	2.5	184	96	1	845	40	8	22	28	1.84
10023711--10024172	231	2.0	230	96	1	845	40	8	22	28	1.84
10028916--10028949	13	2.6	13	95	0	59	73	0	2	23	0.97
10029541--10029593	26	2.0	27	81	3	63	37	5	1	54	1.35
10030735--10030860	44	2.9	44	84	0	171	23	15	21	39	1.91
10031841--10032020	45	4.0	45	100	0	360	31	24	15	28	1.96
10034821--10034865	3	14.7	3	86	4	54	57	0	4	37	1.19
10035315--10035493	42	4.3	42	83	1	225	40	21	15	21	1.90
10035319--10035493	84	2.1	84	86	2	253	40	22	15	21	1.91
10036743--10036866	41	3.0	41	100	0	248	31	33	2	32	1.71
10039268--10039300	17	1.9	17	93	0	57	48	21	15	15	1.81
10041415--10041491	38	2.0	38	100	0	154	28	20	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10044202--10044671	235	2.0	235	94	0	825	33	16	20	28	1.95
10045655--10045699	22	2.0	22	91	0	72	24	13	17	44	1.85
10046293--10046348	28	2.0	28	100	0	112	25	21	10	42	1.85
10048863--10048938	33	2.3	32	77	6	80	35	18	21	25	1.95
10048862--10049058	105	1.9	105	81	8	240	32	17	23	25	1.97
10052227--10052252	5	5.2	5	100	0	52	42	19	19	19	1.90
10053065--10053101	9	4.1	9	92	0	65	29	10	13	45	1.77
10053155--10053203	9	5.4	9	90	0	80	38	22	12	26	1.89
10053155--10053205	18	2.8	18	100	0	102	37	21	11	29	1.89
10053447--10053498	24	2.2	24	89	0	77	42	7	21	28	1.80
10053965--10053991	14	1.9	14	100	0	54	25	0	0	74	0.83
10054090--10054147	23	2.5	23	77	8	64	37	10	15	36	1.82
10062285--10062376	43	2.1	43	89	0	139	28	11	27	32	1.92
10065712--10065738	2	13.5	2	100	0	54	48	0	0	51	1.00
10072149--10072181	6	5.5	6	100	0	66	33	0	15	51	1.43
10073107--10073149	2	21.5	2	100	0	86	48	0	0	51	1.00
10087229--10087266	19	2.1	19	85	5	51	63	7	10	18	1.50
10088591--10088643	26	2.0	26	100	0	106	43	11	22	22	1.85
10092613--10092650	16	2.4	16	95	0	67	36	2	34	26	1.71
10095840--10095900	28	2.2	28	85	5	81	45	0	3	50	1.17
10102954--10103063	50	2.2	49	80	7	134	45	0	12	40	1.48
10112633--10112690	26	2.3	26	78	3	73	36	1	1	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10112644--10112681	16	2.3	17	86	4	51	28	0	0	71	0.87
10112649--10112692	18	2.3	19	84	7	54	31	0	0	68	0.90
10118936--10118987	22	2.4	22	83	6	61	21	19	9	50	1.76
10121773--10121943	30	5.7	30	73	13	120	25	25	11	37	1.90
10121743--10121963	90	2.5	89	83	8	261	25	26	10	37	1.89
10129341--10129589	30	8.4	30	74	9	197	24	24	13	37	1.92
10129406--10129589	59	3.1	61	77	9	202	25	24	13	37	1.91
10131414--10131529	62	1.9	60	84	5	153	50	2	5	42	1.38
10131509--10131615	19	5.8	18	69	14	67	51	3	1	42	1.30
10138497--10138758	131	2.0	131	93	0	443	30	17	15	37	1.91
10140357--10140734	188	2.0	189	92	0	632	26	20	23	29	1.99
10142819--10142868	21	2.4	20	77	9	55	58	2	2	38	1.21
10161189--10161259	26	2.7	26	77	12	65	54	2	5	36	1.38
10165261--10165296	7	5.0	7	86	6	54	13	13	2	69	1.30
10165261--10165297	15	2.5	15	86	4	58	16	13	2	67	1.34
10165261--10165304	22	2.0	22	95	0	79	15	11	4	68	1.36
10165536--10165585	14	3.5	14	78	13	57	60	2	10	28	1.40
10171589--10171804	105	2.1	100	86	4	288	33	15	23	27	1.95
10171624--10171771	33	4.3	33	65	13	91	33	16	22	27	1.95
10179285--10179316	7	4.4	7	92	7	55	12	0	37	50	1.41
10179285--10179316	15	2.2	14	94	5	55	12	0	37	50	1.41
10179274--10179337	8	8.0	8	77	10	60	15	0	32	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10182641--10182790	21	7.1	21	71	3	104	16	26	16	40	1.90
10182640--10182790	42	3.6	42	83	3	178	16	26	16	40	1.90
10184283--10184344	29	2.1	29	100	0	124	50	14	20	14	1.78
10188132--10188161	5	6.0	5	96	0	51	76	0	20	3	0.92
10188239--10188271	17	2.0	17	88	5	50	33	6	39	21	1.78
10190088--10190137	19	2.8	18	77	14	59	34	2	0	64	1.05
10190136--10190184	9	5.1	10	74	18	50	46	6	0	46	1.27
10190089--10190169	40	2.0	40	85	4	110	37	2	0	60	1.10
10190135--10190184	19	2.6	20	84	12	77	46	6	0	48	1.27
10190200--10190536	168	2.0	168	100	0	674	40	20	5	33	1.77
10208579--10208607	15	1.9	15	100	0	58	31	13	27	27	1.94
10209371--10209401	16	1.9	16	93	0	53	35	0	29	35	1.58
10217399--10217576	92	1.9	92	95	0	320	32	10	25	31	1.90
10233666--10233705	11	3.5	11	86	6	53	67	0	2	30	1.04
10242423--10242718	50	5.8	50	82	3	290	27	22	28	21	1.99
10250566--10250590	13	1.9	13	100	0	50	60	16	0	24	1.36
10255285--10255318	17	2.1	16	88	5	50	73	0	17	8	1.08
10257965--10258001	18	2.1	18	85	14	51	5	16	0	78	0.93
10260140--10260169	15	1.9	16	93	6	53	23	6	10	60	1.52
10261751--10261883	42	3.2	42	84	3	171	26	18	27	28	1.98
10261753--10261901	42	3.6	41	84	2	156	26	20	26	26	1.99
10265109--10265168	25	2.4	25	78	13	77	40	18	21	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10268993--10269056	29	2.2	29	86	8	87	56	3	3	37	1.31
10275215--10275441	112	2.0	112	91	0	364	29	17	19	33	1.95
10286009--10286051	18	2.4	18	88	0	68	32	25	0	41	1.56
10288793--10288825	15	2.2	15	89	10	50	3	12	6	78	1.04
10288336--10295487	372	19.0	372	74	11	4888	16	17	15	50	1.79
10289880--10289930	21	2.4	21	84	15	70	5	17	3	72	1.20
10289891--10289924	17	2.1	15	89	10	50	2	17	5	73	1.16
10290305--10290337	16	2.2	15	89	10	50	0	15	9	75	1.03
10290671--10290710	17	2.4	16	84	15	55	2	17	5	75	1.10
10290219--10295487	371	14.0	370	79	7	5056	16	17	15	50	1.79
10288336--10295486	744	9.5	738	78	9	6253	16	17	15	50	1.79
10292626--10292823	96	2.1	96	86	3	274	20	12	21	46	1.82
10294455--10294503	24	2.0	25	84	11	66	4	12	8	75	1.16
10297851--10297972	61	2.0	62	82	4	149	34	14	7	43	1.74
10298612--10298687	9	8.2	9	73	11	64	43	1	1	53	1.17
10298634--10298676	10	4.7	9	88	11	61	32	2	0	65	1.06
10298634--10298683	19	2.7	18	90	3	73	34	2	0	64	1.05
10298612--10298691	10	8.4	10	69	14	53	43	1	1	53	1.16
10303290--10303371	26	3.1	26	82	1	92	43	4	24	26	1.74
10303316--10303451	13	10.4	14	73	9	85	42	2	22	31	1.69
10303362--10303432	25	2.8	26	78	8	74	42	2	18	36	1.65
10304461--10304529	6	10.5	6	77	16	66	66	0	2	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10304461--10304529	19	3.6	19	77	13	70	66	0	2	30	1.06
10304839--10304892	20	2.8	20	91	2	83	66	0	33	0	0.92
10305103--10305220	40	3.1	40	73	14	131	32	6	10	50	1.62
10305079--10305221	76	1.9	75	82	5	182	32	6	11	50	1.63
10310494--10311351	160	5.4	159	93	2	1377	27	7	8	55	1.57
10310497--10311351	314	2.7	315	90	2	1365	27	7	8	55	1.57
10311382--10311468	45	1.9	45	100	0	174	33	4	6	55	1.47
10311592--10311629	20	1.9	20	94	0	67	76	2	0	21	0.91
10311669--10311747	3	26.0	3	75	7	61	0	37	2	59	1.11
10316685--10316744	19	3.1	19	69	11	50	45	13	8	33	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131