genome.fa.s9.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  93  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31247792--31247923	9	13.7	9	69	18	61	62	3	0	34	1.13
31247790--31247902	49	2.3	49	90	3	174	63	4	0	31	1.14
31254000--31254046	25	2.0	25	87	8	71	34	17	21	27	1.95
31258873--31258919	23	2.1	22	84	4	58	19	4	0	76	0.95
31260111--31260144	16	2.2	16	89	5	52	82	2	14	0	0.79
31265098--31265171	38	1.9	38	100	0	148	28	20	8	43	1.80
31270882--31271774	209	4.3	209	99	0	1759	32	32	11	23	1.91
31273546--31273602	16	3.5	16	74	9	53	28	1	17	52	1.54
31275329--31275368	18	2.4	17	87	8	55	25	7	0	67	1.16
31278577--31279014	219	2.0	219	100	0	876	34	18	11	35	1.87
31283036--31283092	16	3.5	16	74	9	53	28	1	17	52	1.54
31284819--31284858	18	2.4	17	87	8	55	25	7	0	67	1.16
31288871--31289142	44	6.3	43	67	10	122	31	24	16	26	1.97
31289307--31289443	43	3.2	43	65	17	111	23	22	25	28	1.99
31289293--31289507	87	2.5	87	96	0	385	21	24	25	28	1.99
31289550--31289603	15	3.5	15	79	5	54	14	16	1	66	1.34
31293722--31293768	16	3.0	15	79	14	51	29	19	4	46	1.68
31294436--31294468	16	2.1	16	94	0	57	63	0	0	36	0.95
31294415--31294501	35	2.4	37	80	11	90	58	4	4	32	1.39
31295151--31295193	22	2.0	22	95	0	77	30	2	11	55	1.48
31295414--31295456	22	2.0	22	95	0	77	30	2	11	55	1.48
31295091--31295642	263	2.1	264	97	1	1045	35	4	9	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31295780--31295822	21	2.0	21	86	8	61	39	4	4	51	1.44
31295938--31295970	13	2.5	13	90	9	50	54	0	0	45	0.99
31296816--31296848	17	1.9	17	93	0	57	15	6	0	78	0.93
31298396--31298421	3	8.7	3	100	0	52	69	0	0	30	0.89
31300084--31300130	19	2.5	19	86	6	60	25	19	10	44	1.82
31301418--31301477	25	2.4	25	88	0	84	81	8	0	10	0.87
31301438--31301481	9	5.1	9	86	10	56	81	6	0	11	0.86
31301447--31301481	16	2.2	16	94	0	61	80	8	0	11	0.92
31301420--31301481	16	3.8	17	78	20	60	82	9	0	8	0.85
31301494--31301527	6	5.3	6	86	13	50	79	0	20	0	0.73
31301496--31301526	14	2.3	13	94	5	53	83	0	16	0	0.64
31310783--31310822	21	2.0	20	85	5	53	50	12	22	15	1.77
31319273--31319390	44	2.7	44	77	5	130	27	23	26	22	1.99
31319358--31319479	44	2.8	44	77	5	122	25	18	25	31	1.97
31320182--31320211	13	2.2	14	94	5	53	13	10	0	76	1.01
31322802--31323118	98	3.3	96	88	6	436	40	1	19	37	1.62
31322844--31323118	98	2.8	97	92	3	446	40	1	18	38	1.62
31323259--31323342	43	2.0	43	97	0	159	28	34	15	21	1.94
31328365--31328415	15	3.5	14	78	5	57	37	33	0	29	1.58
31328405--31328444	7	5.7	7	84	0	53	32	50	0	17	1.47
31328654--31328686	14	2.3	15	94	5	59	36	33	0	30	1.58
31328843--31329249	41	9.9	41	86	1	485	30	27	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31329470--31329887	126	3.3	126	87	1	579	35	16	18	28	1.93
31332875--31332968	47	2.0	46	93	2	161	46	4	4	44	1.42
31335838--31335873	9	4.0	9	88	0	54	11	38	13	36	1.81
31335908--31335986	38	2.0	40	83	9	101	65	2	1	30	1.13
31336671--31336845	96	1.8	96	98	0	341	45	20	8	25	1.79
31346246--31346290	21	2.3	19	84	7	54	66	0	0	33	0.92
31346246--31346290	10	4.5	10	81	10	56	66	0	0	33	0.92
31347917--31348122	89	2.3	88	82	9	226	29	24	17	28	1.97
31348150--31348469	44	7.4	44	69	13	146	30	21	19	28	1.98
31347879--31348554	216	3.1	216	91	1	1032	29	23	18	28	1.98
31348221--31348338	45	2.7	44	80	11	134	28	24	18	27	1.98
31362250--31362457	89	2.4	88	81	11	214	29	24	17	28	1.97
31362259--31362586	44	7.5	44	71	13	155	29	23	18	28	1.98
31362212--31362737	216	2.4	216	90	1	786	29	23	18	28	1.98
31364375--31364438	32	2.1	32	85	5	87	57	10	3	28	1.48
31366646--31366761	3	37.7	3	77	14	103	60	2	4	32	1.30
31368256--31368374	44	2.7	43	80	6	132	26	24	20	29	1.99
31368355--31368459	41	2.5	41	79	4	102	30	15	22	31	1.95
31369933--31369975	6	6.8	6	82	17	52	0	16	0	83	0.64
31374728--31375053	162	2.0	163	98	1	627	32	17	14	35	1.90
31375481--31375515	16	2.1	17	89	5	54	62	0	5	31	1.18
31375472--31375512	18	2.2	19	87	12	59	63	0	4	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31387425--31387487	28	2.2	28	81	10	76	41	0	1	57	1.08
31389873--31390078	98	2.1	98	87	0	286	36	13	22	27	1.91
31390662--31390842	97	1.9	98	89	3	285	35	11	22	30	1.89
31390529--31390985	231	2.0	231	85	3	616	36	12	21	29	1.91
31390749--31391027	134	2.1	133	86	2	389	36	12	21	29	1.91
31391394--31391741	133	2.6	133	80	4	389	37	11	18	32	1.87
31392621--31392972	134	2.6	133	78	1	364	36	11	19	32	1.87
31398783--31398953	85	2.0	86	98	1	335	21	15	20	43	1.88
31399214--31399570	134	2.7	134	82	2	423	35	13	21	30	1.91
31399920--31400275	134	2.7	132	75	6	340	39	10	17	32	1.84
31400687--31401088	134	3.0	133	76	9	338	38	12	18	30	1.88
31402670--31403009	134	2.5	134	79	5	348	35	12	20	32	1.90
31402840--31403924	541	2.0	540	80	4	1213	33	16	16	33	1.91
31403378--31404636	569	2.2	568	79	3	1341	33	15	17	33	1.91
31405665--31406657	529	1.9	525	80	5	1169	33	16	16	33	1.92
31408141--31408224	36	2.4	35	80	9	91	42	15	13	28	1.84
31410265--31411697	477	3.0	474	75	11	1299	33	16	17	33	1.92
31415376--31415471	35	2.7	36	72	16	85	32	11	22	33	1.90
31421538--31421694	30	5.3	30	73	6	140	21	23	12	42	1.87
31421527--31421696	90	1.9	89	87	1	250	22	23	12	41	1.88
31421682--31421747	29	2.3	29	89	5	98	28	28	9	33	1.88
31424728--31424771	13	3.3	13	93	6	79	40	15	13	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31424731--31424772	14	3.1	14	96	3	77	42	14	14	28	1.84
31424728--31424802	13	5.6	14	78	10	68	41	14	17	26	1.88
31428693--31430887	571	3.9	565	79	5	2146	34	15	17	32	1.91
31430949--31430991	20	2.2	20	88	12	63	20	11	6	60	1.54
31430691--31431475	312	2.5	312	91	0	1248	32	17	14	35	1.90
31431261--31431304	20	2.2	20	95	0	79	22	13	6	56	1.61
31431577--31431811	121	1.9	121	85	1	319	35	13	18	32	1.90
31431858--31431895	20	1.9	20	94	0	67	42	2	15	39	1.61
31432502--31438950	568	11.4	569	80	4	6123	34	16	16	32	1.92
31432502--31439562	571	12.5	569	80	5	6477	34	16	16	32	1.92
31438410--31439425	545	1.9	546	84	3	1366	34	16	16	33	1.91
31444445--31444484	2	20.0	2	94	0	53	42	7	0	50	1.30
31444248--31444712	239	1.9	239	100	0	930	34	22	13	30	1.92
31444684--31444709	2	13.0	2	100	0	52	50	0	0	50	1.00
31446247--31446300	19	3.0	17	76	12	63	37	0	3	59	1.15
31446257--31446322	29	2.3	27	80	12	71	33	0	4	62	1.16
31446251--31446324	9	8.0	9	71	20	55	32	0	4	63	1.13
31450215--31450269	23	2.4	23	82	8	60	40	3	7	49	1.48
31457633--31457676	23	1.9	23	85	0	61	36	0	9	54	1.32
31459173--31460190	114	8.9	114	87	2	1224	32	18	23	25	1.97
31460511--31460575	22	3.0	21	80	6	76	16	0	36	46	1.48
31463292--31463335	23	1.9	23	95	0	79	45	20	0	34	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31463268--31463393	18	7.4	18	68	13	70	42	18	1	37	1.60
31463455--31463542	13	6.7	13	75	7	79	39	9	4	46	1.56
31463445--31463580	53	2.6	52	87	4	184	40	8	3	47	1.52
31463445--31463589	27	5.4	27	71	12	102	40	8	3	46	1.52
31463498--31463578	23	3.2	23	72	21	72	39	7	4	48	1.53
31463736--31463782	16	3.2	16	71	22	57	44	17	2	36	1.60
31463890--31463939	16	3.4	16	73	21	63	46	18	2	34	1.60
31463956--31464332	9	41.7	9	67	19	171	44	20	1	33	1.62
31464038--31464101	25	2.6	25	85	2	85	51	20	1	26	1.56
31464088--31464237	23	6.0	24	69	21	94	45	21	0	33	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131