genome.fa.s9.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  57  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18625122--18625201	26	3.2	25	76	16	87	72	0	27	0	0.85
18625846--18625882	18	2.1	18	89	0	56	37	8	10	43	1.69
18626011--18626081	21	3.5	21	75	21	78	40	12	8	38	1.74
18626016--18626137	18	6.6	17	77	18	68	36	11	9	42	1.74
18626016--18626080	19	3.3	19	73	23	62	40	13	9	36	1.77
18626009--18626133	40	3.3	40	81	12	156	36	11	9	42	1.73
18626035--18626167	18	7.2	18	75	18	98	36	10	9	42	1.72
18626067--18626167	18	5.8	17	78	14	107	34	8	10	45	1.71
18626069--18626170	52	2.0	52	94	0	177	34	8	10	46	1.70
18626120--18626200	35	2.3	34	82	6	90	35	13	8	41	1.75
18631844--18631899	10	5.6	10	81	8	60	83	5	7	3	0.88
18632759--18633236	78	6.0	78	92	5	787	28	17	20	34	1.95
18632759--18634579	230	7.9	235	83	9	1838	28	17	20	34	1.95
18633103--18633370	133	2.0	135	94	3	479	28	18	23	29	1.98
18633240--18634579	76	17.5	75	84	6	1472	28	17	20	34	1.95
18633240--18634579	153	8.7	151	83	6	1517	28	17	20	34	1.95
18634762--18634901	30	4.7	29	77	4	127	35	22	2	40	1.69
18634769--18634885	29	4.0	28	80	8	117	36	21	1	40	1.64
18634762--18634886	59	2.1	60	88	4	182	35	20	2	41	1.66
18635359--18635431	24	3.1	24	80	3	87	72	0	27	0	0.85
18635370--18635437	12	5.7	12	67	11	50	75	0	25	0	0.81
18636189--18636318	19	7.1	18	75	14	63	38	10	9	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18636215--18636318	18	5.9	18	81	13	126	33	11	10	44	1.75
18636208--18636322	52	2.2	52	92	3	185	34	11	9	44	1.73
18639873--18640071	99	2.0	100	98	1	382	14	23	47	15	1.82
18641719--18641758	21	2.0	21	85	5	55	25	2	2	70	1.13
18646067--18646116	22	2.3	22	79	6	57	64	2	0	34	1.05
18646293--18646338	23	2.0	24	82	4	58	65	10	4	19	1.41
18646219--18646498	115	2.4	113	82	5	305	59	15	2	22	1.49
18647227--18647263	16	2.3	16	95	0	65	37	5	32	24	1.78
18647245--18647337	44	2.1	46	89	4	145	29	5	30	35	1.80
18650308--18650333	12	2.2	12	100	0	52	30	23	38	7	1.83
18652150--18652498	114	3.0	114	95	2	610	39	18	20	20	1.93
18656779--18656939	61	2.7	58	85	8	191	52	2	1	43	1.25
18659358--18659398	17	2.3	18	83	12	57	36	19	14	29	1.92
18661103--18661138	13	2.8	13	86	0	54	58	0	2	38	1.13
18662564--18662597	17	1.9	18	88	5	52	67	0	0	32	0.91
18663920--18664025	19	5.3	19	73	11	86	33	2	1	61	1.22
18663898--18664025	10	12.8	10	69	17	63	35	3	1	59	1.23
18664186--18664257	30	2.5	29	84	4	83	37	9	8	44	1.68
18666446--18666477	14	2.3	15	89	10	50	43	3	37	15	1.63
18666931--18666969	13	2.9	13	80	3	51	71	0	0	28	0.86
18666933--18666969	15	2.5	15	87	12	51	70	0	0	29	0.88
18668465--18668527	20	2.8	22	79	18	60	38	0	3	58	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18669193--18669424	115	2.0	116	97	0	439	33	18	14	34	1.90
18680934--18681293	173	2.1	174	87	1	515	31	18	19	29	1.96
18683236--18683298	20	2.8	22	79	18	60	38	0	3	58	1.14
18691714--18691778	27	2.4	27	78	14	80	24	24	18	32	1.97
18698661--18698757	3	32.7	3	81	6	108	61	2	4	31	1.26
18698652--18698683	15	2.2	14	94	5	55	56	0	6	37	1.25
18700453--18701651	175	6.9	175	92	0	1893	28	21	18	31	1.97
18704024--18704061	6	6.0	6	88	11	58	0	18	0	81	0.69
18704024--18704059	14	2.8	13	91	8	56	0	16	0	83	0.65
18704024--18704061	13	3.0	12	88	11	58	0	18	0	81	0.69
18706168--18706216	19	2.5	20	80	6	57	42	10	18	28	1.83
18707537--18707844	110	2.8	110	89	2	462	35	18	15	30	1.92
18708727--18709002	3	92.0	3	94	1	473	64	0	1	32	1.07
18710976--18711033	29	2.0	29	100	0	116	24	37	17	20	1.93
18711661--18711691	9	3.3	9	91	8	53	80	0	19	0	0.71
18711662--18711708	23	2.0	23	87	0	67	72	0	25	2	0.96
18711661--18711708	18	2.6	18	86	6	60	72	0	25	2	0.95
18718273--18718311	19	2.1	19	90	0	60	76	0	20	2	0.90
18718270--18718311	5	8.6	5	84	5	59	76	0	21	2	0.90
18718263--18718311	24	2.0	24	88	0	71	75	2	20	2	1.00
18718263--18718320	24	2.4	23	80	11	62	72	1	24	1	1.03
18725273--18725297	13	1.9	13	100	0	50	20	16	24	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18725317--18725388	32	2.2	32	90	4	110	22	16	34	26	1.95
18734554--18734863	114	2.7	113	88	1	449	28	21	23	26	1.99
18734759--18734923	73	2.3	73	94	0	285	26	20	24	28	1.99
18734645--18735050	187	2.2	187	89	0	614	28	20	24	27	1.99
18734832--18735163	114	2.9	114	88	0	493	27	20	26	26	1.99
18734552--18735370	301	2.7	300	85	3	1079	28	21	24	26	1.99
18735064--18735232	71	2.3	72	84	2	205	26	21	25	26	2.00
18734946--18735544	185	3.1	185	81	5	662	27	21	24	26	1.99
18735287--18735452	83	2.0	82	90	1	260	24	22	25	27	2.00
18735823--18735869	16	2.9	16	81	15	60	21	0	44	34	1.52
18735852--18735893	7	5.9	7	78	15	50	14	0	45	40	1.45
18738425--18738610	43	4.3	43	83	0	210	22	22	27	27	1.99
18738425--18738612	86	2.2	86	85	0	241	21	22	28	27	1.99
18741700--18741742	21	2.0	21	82	8	52	74	2	2	20	1.04
18748561--18748746	43	4.3	43	83	0	210	22	22	27	27	1.99
18748561--18748748	86	2.2	86	85	0	241	21	22	28	27	1.99
18751836--18751878	21	2.0	21	82	8	52	74	2	2	20	1.04
18751923--18751963	18	2.2	19	91	4	66	70	0	4	24	1.06
18751933--18752000	28	2.4	30	76	16	74	58	1	4	35	1.27
18752255--18752321	18	3.5	18	78	15	55	43	1	0	55	1.09
18752260--18752321	10	6.5	10	81	10	53	43	1	0	54	1.09
18753711--18753928	40	5.4	40	98	0	418	22	28	24	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18753997--18754051	29	1.9	29	88	3	85	36	16	16	30	1.91
18760394--18760437	22	2.0	23	90	4	72	40	0	4	54	1.21
18771303--18771344	22	2.1	19	86	13	57	45	2	0	52	1.13
18771383--18771417	17	2.1	17	89	5	54	42	0	0	57	0.99
18781430--18781604	94	1.9	94	91	2	289	48	5	10	34	1.62
18781559--18781688	49	2.7	48	85	7	165	49	2	5	43	1.38
18784108--18784140	15	2.1	16	88	5	50	30	6	12	51	1.63
18785422--18785525	43	2.4	43	80	0	118	28	19	24	27	1.98
18793454--18793536	26	3.2	25	70	16	71	53	0	10	36	1.36
18793438--18793567	52	2.6	48	86	11	181	48	0	10	40	1.42
18793609--18793653	21	2.1	22	88	8	67	53	0	8	37	1.32
18796370--18796464	45	2.1	45	100	0	190	29	25	17	27	1.98
18802675--18802871	49	3.8	50	81	6	200	22	26	21	28	1.99
18807826--18808009	51	3.6	51	81	5	221	30	27	18	22	1.97
18807822--18808004	102	1.8	102	89	3	289	31	28	17	22	1.96
18808234--18808265	16	2.0	16	93	0	55	43	9	6	40	1.62
18813442--18813565	50	2.5	50	81	5	142	21	28	24	25	1.99
18817279--18817308	15	1.9	16	93	6	53	20	23	13	43	1.86
18824804--18824845	17	2.4	18	80	8	50	28	45	7	19	1.76
18850801--18850979	86	2.1	87	97	1	342	34	10	8	46	1.69
18857879--18857978	49	2.1	47	83	7	132	30	16	9	45	1.78
18864283--18864347	28	2.3	30	76	10	73	53	3	0	43	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18868969--18869013	23	1.9	23	82	13	56	15	8	40	35	1.79
18869030--18869300	124	2.2	125	86	5	370	28	14	24	33	1.94
18871050--18871107	29	2.1	28	83	6	73	20	5	8	65	1.40
18872334--18872373	18	2.3	18	86	4	55	70	2	25	2	1.13
18874430--18874482	27	1.9	28	84	3	72	47	0	7	45	1.31
18881328--18881360	14	2.2	16	89	10	52	30	0	3	66	1.06
18885025--18885049	12	2.1	12	100	0	50	24	36	24	16	1.94
18885205--18885288	9	9.2	9	84	7	89	40	25	10	23	1.87
18885213--18885288	29	2.8	27	86	6	100	40	23	11	23	1.88
18885258--18885300	11	4.2	11	82	14	56	46	25	6	20	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131