genome.fa.s9.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  46  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15085958--15086002	20	2.2	20	100	0	90	20	0	17	62	1.33
15091739--15091969	40	5.8	40	78	3	225	21	25	15	37	1.93
15099152--15099188	18	2.1	18	94	0	65	21	27	13	37	1.91
15099921--15099988	30	2.2	31	84	2	84	48	7	17	26	1.73
15105396--15105449	28	2.0	27	82	13	67	59	11	14	14	1.62
15113667--15113912	40	6.2	40	84	1	278	20	27	17	34	1.95
15113668--15113912	80	3.1	80	86	1	321	20	27	17	34	1.95
15113667--15113903	120	2.0	120	87	0	339	20	27	16	35	1.94
15129674--15129703	12	2.5	12	100	0	60	16	13	0	70	1.18
15129676--15129716	12	3.1	13	89	10	57	14	17	2	65	1.37
15134573--15134926	29	12.2	29	86	0	492	22	28	12	36	1.91
15134573--15134926	58	6.1	58	93	0	546	22	28	12	36	1.91
15147433--15147572	43	3.3	43	80	5	162	27	22	19	30	1.98
15151560--15151804	50	4.9	50	87	0	319	26	20	31	22	1.98
15151568--15151843	50	5.5	50	82	4	155	27	20	28	23	1.99
15153119--15153161	22	2.0	22	86	4	61	53	11	0	34	1.37
15153734--15153794	30	2.0	30	100	0	122	22	16	9	50	1.74
15157044--15157139	46	2.0	48	92	6	160	41	12	11	34	1.79
15158863--15158888	8	3.2	8	100	0	52	53	23	11	11	1.69
15171313--15171373	29	2.1	29	93	0	104	57	9	13	19	1.63
15172562--15172701	49	2.8	50	79	7	142	35	22	24	17	1.96
15172583--15172786	74	2.7	73	78	5	203	36	22	25	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15172621--15172801	49	3.7	49	79	10	165	35	21	26	16	1.94
15172569--15172809	25	9.7	25	75	8	170	34	21	26	17	1.95
15173679--15173708	14	2.2	14	94	5	53	20	13	0	66	1.24
15177800--15177838	18	2.2	18	85	0	51	38	5	7	48	1.54
15178894--15179020	45	2.8	45	81	2	166	41	17	19	21	1.90
15181969--15181998	16	1.9	16	93	6	53	30	0	20	50	1.49
15182854--15182878	12	2.1	12	100	0	50	36	40	16	8	1.77
15219222--15219308	25	3.5	25	83	0	93	32	22	20	24	1.98
15219301--15219353	25	2.2	24	86	3	70	39	15	22	22	1.91
15219238--15219345	50	2.2	52	76	10	116	35	18	23	23	1.96
15224732--15224790	30	2.0	30	86	0	82	37	8	25	28	1.85
15225184--15225345	43	3.8	43	75	9	161	23	14	25	36	1.93
15225191--15225382	43	4.6	40	74	11	145	23	14	26	35	1.93
15225191--15225390	85	2.4	84	92	0	328	24	16	25	34	1.95
15226924--15226963	20	2.0	20	100	0	80	50	0	10	40	1.36
15228593--15228720	25	5.2	25	80	6	127	33	20	21	24	1.97
15233568--15233661	45	2.1	45	85	0	125	34	23	17	25	1.96
15233658--15233851	51	3.8	50	78	3	201	31	29	17	22	1.96
15233665--15233849	101	1.8	101	85	3	264	32	28	16	22	1.96
15237708--15237769	29	2.1	29	93	0	106	20	27	16	35	1.94
15238416--15238483	35	1.9	35	91	5	111	42	19	20	17	1.89
15253548--15253641	44	2.1	44	84	4	116	31	4	26	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15255348--15255450	47	2.1	49	87	3	147	49	10	9	30	1.69
15255955--15256478	263	2.0	263	91	0	841	34	22	11	31	1.89
15257813--15257884	30	2.4	30	85	0	90	29	8	34	27	1.86
15261753--15261819	35	1.9	35	100	0	134	56	20	8	13	1.64
15261786--15261846	23	2.7	23	94	0	104	57	21	8	13	1.62
15263027--15263093	35	1.9	35	100	0	134	56	20	8	13	1.64
15263060--15263120	23	2.7	23	94	0	104	57	21	8	13	1.62
15264252--15264279	14	2.0	14	100	0	56	64	0	28	7	1.20
15264255--15264299	17	2.5	18	89	7	65	68	0	24	6	1.13
15268322--15268413	45	2.0	45	100	0	184	32	19	18	29	1.96
15275770--15275804	13	2.7	13	90	0	52	42	11	0	45	1.40
15286908--15286988	12	6.8	12	69	17	53	12	24	1	61	1.38
15286923--15286978	18	3.0	20	68	26	59	10	26	0	62	1.28
15287018--15287064	15	3.1	15	84	9	60	12	17	0	70	1.17
15288101--15288146	14	3.4	14	87	6	67	4	17	0	78	0.91
15289650--15289696	20	2.3	20	85	7	60	25	17	29	27	1.97
15294289--15294329	15	2.7	15	100	0	82	65	4	12	17	1.42
15298720--15299016	50	5.8	50	82	3	301	27	22	28	21	1.99
15303413--15303473	25	2.4	26	81	8	72	37	3	1	57	1.25
15306591--15306620	14	2.1	15	93	6	53	36	20	23	20	1.95
15311984--15312105	54	2.3	54	94	0	208	31	9	14	43	1.78
15312057--15312095	19	2.1	19	95	0	69	28	10	10	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15312412--15312493	24	3.5	24	73	15	82	45	14	9	30	1.77
15315786--15315850	22	3.2	22	68	28	70	46	20	4	29	1.70
15315759--15315937	39	4.6	39	87	0	243	45	20	2	31	1.65
15322081--15322119	20	2.0	20	100	0	78	38	20	10	30	1.86
15324754--15324782	13	2.1	14	93	6	51	48	6	0	44	1.29
15326014--15326091	38	2.1	38	95	0	138	35	26	12	24	1.92
15349373--15349397	13	1.9	13	100	0	50	60	16	8	16	1.58
15356423--15356472	20	2.5	20	75	12	57	12	22	6	60	1.53
15356765--15356916	50	3.0	50	84	3	160	23	30	20	25	1.98
15358142--15358191	20	2.5	20	75	12	57	12	22	6	60	1.53
15358484--15358640	50	3.1	50	86	0	197	21	31	21	26	1.98
15360229--15360313	40	2.2	40	97	2	163	23	25	14	36	1.93
15363462--15363510	20	2.5	20	75	15	57	59	6	22	12	1.55
15366755--15366811	29	2.0	29	86	6	80	17	29	14	38	1.89
15370811--15370928	23	5.2	23	86	2	157	31	24	20	23	1.98
15370811--15370931	45	2.6	45	89	2	179	32	23	19	23	1.98
15371157--15371195	18	2.2	17	86	13	53	46	20	0	33	1.51
15371777--15371835	30	2.0	29	83	3	73	28	27	5	38	1.78
15374030--15374084	20	2.8	19	72	25	51	43	18	1	36	1.61
15376635--15376721	45	1.9	45	92	0	147	26	16	22	34	1.95
15381597--15381747	43	3.6	42	78	7	146	31	26	19	23	1.98
15381641--15381743	41	2.5	41	85	4	127	30	24	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15381795--15381838	18	2.3	18	80	7	52	29	25	0	45	1.54
15384828--15385012	101	1.8	102	87	5	277	24	17	26	31	1.97
15384824--15385014	51	3.8	50	82	5	215	24	16	27	31	1.96
15384934--15385014	26	3.2	26	67	28	73	22	13	28	35	1.92
15398906--15398967	20	3.1	19	70	9	52	16	19	27	37	1.93
15399035--15399094	23	2.6	23	91	0	102	38	3	8	50	1.49
15400724--15400905	91	2.0	91	89	2	276	27	19	14	38	1.91
15409800--15409839	20	2.1	19	85	4	53	37	10	12	40	1.77
15413768--15414132	27	13.5	27	78	8	285	43	20	16	19	1.88
15413767--15414123	108	3.3	108	83	5	348	43	20	16	19	1.88
15414286--15414388	26	4.0	26	84	2	100	20	21	19	38	1.93
15414505--15414576	28	2.6	28	88	0	108	25	25	22	27	2.00
15419799--15419867	35	2.0	35	86	11	97	5	26	8	59	1.50
15420519--15420737	27	8.1	27	81	4	228	42	20	17	19	1.89
15420517--15420732	81	2.7	81	84	3	285	43	19	18	19	1.89
15421081--15421168	28	3.1	28	90	1	122	26	22	22	28	1.99
15421081--15421197	28	3.9	30	78	15	84	27	23	22	27	1.99
15431933--15431966	17	2.0	17	94	0	59	32	17	8	41	1.80
15434466--15434632	83	2.0	81	88	2	244	29	16	11	41	1.84
15438055--15438180	36	3.6	36	72	10	116	23	22	24	29	1.99
15438028--15438228	70	2.8	71	83	3	235	24	22	23	28	1.99
15443233--15443279	20	2.5	19	76	10	51	40	12	17	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15443565--15443658	17	5.5	17	70	5	64	27	10	20	41	1.85
15447327--15447363	5	7.0	5	88	11	56	81	0	18	0	0.70
15447328--15447363	11	3.3	11	100	0	72	83	0	16	0	0.65
15447327--15447363	16	2.3	16	90	9	58	81	0	18	0	0.70
15451362--15451542	51	3.6	50	77	5	159	24	17	26	30	1.97
15451549--15451643	45	2.1	45	86	0	136	26	18	22	32	1.97
15470608--15470870	131	2.0	131	97	0	499	14	28	20	36	1.92
15472418--15473163	373	2.0	373	100	0	1492	27	19	14	37	1.91
15473503--15473535	15	2.3	14	94	5	57	12	0	18	69	1.18
15479355--15479380	9	2.9	9	100	0	52	19	0	11	69	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131