genome.fa.s9.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  108  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35861911--35861950	20	2.0	20	100	0	80	50	5	0	45	1.23
35867030--35867098	33	2.1	33	91	5	113	18	21	28	30	1.97
35872437--35872483	17	2.9	17	81	6	53	51	0	2	46	1.13
35872445--35872489	21	2.2	20	88	4	63	48	0	2	48	1.13
35872441--35872520	18	4.3	18	80	13	83	45	0	1	53	1.08
35874436--35874501	28	2.4	28	87	5	91	51	12	10	25	1.71
35878665--35878697	3	11.0	3	100	0	66	66	0	0	33	0.92
35885865--35885927	30	2.1	30	90	0	99	36	7	25	30	1.84
35894407--35895538	385	2.9	385	99	0	2201	25	21	24	28	1.99
35895899--35896272	40	9.4	40	89	2	522	22	31	16	29	1.96
35898910--35899103	50	3.9	50	78	2	185	27	21	27	23	1.99
35899306--35899356	12	4.3	12	78	9	52	52	3	25	17	1.61
35913344--35913376	12	2.9	12	91	8	52	72	9	9	9	1.28
35915970--35916002	6	5.5	6	96	0	57	18	21	15	45	1.85
35920417--35920456	15	2.5	16	84	12	55	45	0	0	55	0.99
35921780--35921827	3	16.3	3	95	4	89	68	0	0	31	0.90
35922233--35922325	45	2.1	45	85	0	123	21	18	18	41	1.90
35924457--35924519	13	4.9	13	77	11	67	33	9	22	34	1.86
35925128--35925256	65	2.0	65	90	0	204	29	24	15	30	1.96
35925138--35925282	65	2.2	65	83	0	191	28	25	15	29	1.96
35930250--35930370	62	2.0	62	100	0	242	23	14	21	39	1.91
35930262--35930384	62	2.0	62	87	4	180	26	17	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35932360--35932392	15	2.1	16	88	5	50	51	0	27	21	1.48
35932330--35932401	20	3.6	20	92	0	117	51	0	26	22	1.48
35944185--35944285	40	2.6	39	82	3	123	49	6	4	38	1.51
35947042--35947085	21	2.2	20	84	12	54	47	0	15	36	1.46
35948550--35948582	17	1.9	17	93	0	57	48	12	18	21	1.80
35949053--35949102	21	2.4	21	90	6	75	26	38	6	30	1.80
35954641--35954696	30	1.9	28	82	13	69	60	8	14	16	1.57
35969358--35969404	25	1.9	24	95	4	85	0	17	10	72	1.12
35969467--35969505	18	2.2	17	82	13	51	5	17	2	74	1.12
35975816--35975870	23	2.4	23	90	0	83	23	10	27	38	1.88
35977742--35977780	18	2.2	17	82	13	51	5	17	2	74	1.12
35978641--35978736	48	2.0	48	100	0	192	54	20	10	14	1.70
35981421--35981471	25	2.1	24	81	3	57	50	11	15	21	1.76
35982393--35983000	304	2.0	304	94	1	1058	31	10	24	33	1.89
35991728--35991782	23	2.4	23	90	0	83	41	25	9	23	1.83
35996899--35996935	17	2.3	17	90	9	60	13	16	0	70	1.17
35996925--35996958	18	1.9	18	88	5	52	23	20	0	55	1.43
35997855--35997940	11	7.6	11	73	18	52	12	13	2	70	1.25
35997867--35997894	11	2.5	11	100	0	56	14	0	7	78	0.95
35997855--35997892	20	1.9	20	88	0	58	15	5	5	73	1.19
36009918--36010307	197	2.0	197	84	7	513	33	14	12	39	1.84
36010288--36010443	78	2.0	78	96	2	287	27	18	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36031880--36031926	25	1.9	24	86	4	67	55	10	14	19	1.68
36034328--36034426	39	2.5	40	90	6	159	20	12	12	55	1.68
36034742--36034793	23	2.3	22	75	21	54	11	23	0	65	1.25
36034828--36034877	18	2.6	19	87	9	66	4	20	2	74	1.08
36034834--36034877	19	2.4	17	82	14	52	4	18	2	75	1.09
36039062--36039133	33	2.1	34	89	2	110	40	6	12	40	1.70
36052865--36052925	30	2.1	29	84	9	79	34	3	4	57	1.36
36053533--36053572	20	2.1	19	85	4	53	60	7	5	27	1.45
36056734--36056781	23	2.0	24	84	11	64	45	4	0	50	1.21
36061208--36061252	20	2.3	19	84	7	54	24	33	11	31	1.90
36062715--36062775	10	5.8	11	84	13	67	73	3	9	13	1.20
36062730--36062784	10	5.8	10	82	18	64	78	3	9	9	1.08
36062739--36062784	19	2.5	18	89	6	74	78	2	10	8	1.05
36062728--36062783	29	2.0	27	89	6	85	78	3	10	7	1.06
36094409--36094442	11	3.2	11	83	8	52	23	32	14	29	1.94
36095248--36095283	11	3.3	11	92	0	63	72	8	2	16	1.21
36096775--36096818	22	2.0	22	95	0	79	25	36	4	34	1.76
36102449--36102482	11	3.2	11	83	8	52	23	32	14	29	1.94
36109663--36109707	20	2.3	19	92	3	72	26	20	28	24	1.99
36112234--36112276	12	3.7	12	90	6	70	16	4	4	74	1.16
36120236--36120820	88	6.7	89	87	4	689	24	24	22	27	2.00
36120431--36120669	44	5.4	43	66	8	149	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36122455--36122504	20	2.6	18	84	15	64	14	16	0	70	1.18
36122462--36122504	19	2.2	20	88	12	63	11	16	0	72	1.13
36122844--36122944	50	2.0	49	86	1	139	10	7	6	74	1.22
36122878--36122955	27	2.8	26	71	9	66	6	10	5	78	1.09
36127019--36127044	12	2.2	12	100	0	52	7	34	46	11	1.69
36127589--36127614	2	13.0	2	100	0	52	0	50	0	50	1.00
36127741--36127769	2	14.5	2	100	0	58	51	0	0	48	1.00
36128798--36128836	15	2.7	15	88	4	53	51	0	5	43	1.24
36132764--36132807	16	2.6	16	82	13	52	70	2	0	27	0.99
36132777--36132838	31	2.0	32	82	14	78	70	3	3	22	1.16
36153209--36153265	29	2.0	27	83	6	69	66	1	22	8	1.29
36164034--36164156	41	3.1	41	73	12	132	28	14	19	37	1.91
36164034--36164137	37	2.7	38	80	5	120	27	15	21	35	1.93
36168608--36168839	46	5.0	46	95	0	410	28	27	9	34	1.87
36169795--36170051	126	2.0	126	95	0	460	31	19	7	42	1.78
36176104--36176174	34	2.1	34	100	0	142	43	11	16	28	1.83
36179211--36179271	21	3.0	20	78	7	68	65	1	1	31	1.12
36179192--36179437	122	2.0	123	99	0	485	53	7	8	30	1.59
36179333--36179393	21	3.0	20	78	7	68	65	1	1	31	1.12
36182360--36182393	18	1.9	17	94	5	59	14	0	5	79	0.91
36184303--36184421	43	2.8	43	82	8	152	31	27	18	21	1.97
36189221--36189254	7	4.9	7	100	0	68	14	0	11	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36189221--36189261	21	2.0	21	90	0	64	17	2	9	70	1.25
36190980--36191043	25	2.5	25	76	20	62	18	6	6	68	1.32
36191982--36192015	18	1.9	17	88	5	50	76	14	5	2	1.09
36199949--36200010	32	1.9	32	83	6	81	50	0	11	38	1.39
36199965--36200067	51	2.0	50	81	12	120	42	0	10	45	1.45
36200896--36200938	17	2.5	17	88	0	59	30	27	30	11	1.92
36201191--36201835	114	5.7	113	76	8	486	31	20	23	24	1.98
36201189--36201724	228	2.3	227	78	5	569	31	20	23	24	1.98
36201537--36201831	106	2.7	107	89	4	421	30	21	23	23	1.99
36208236--36208331	21	4.4	21	79	7	93	36	18	41	3	1.67
36208269--36208328	12	5.2	12	78	11	72	38	20	40	1	1.62
36208762--36208940	85	2.1	85	85	9	240	23	24	20	32	1.98
36208762--36208928	42	4.0	42	88	4	223	23	23	19	32	1.97
36212064--36212109	18	2.6	17	83	12	58	0	30	0	69	0.89
36214114--36214232	44	2.8	42	70	23	113	55	1	4	38	1.29
36215422--36215464	10	4.3	10	78	0	50	62	6	0	30	1.21
36215421--36215482	20	3.3	19	78	8	65	59	4	0	35	1.19
36215650--36215689	20	2.1	19	85	4	53	25	0	2	72	0.97
36216132--36216433	153	2.0	153	100	0	604	32	10	9	47	1.70
36216425--36216452	2	14.0	2	100	0	56	50	0	0	50	1.00
36216735--36216851	61	1.9	61	86	8	168	52	12	11	23	1.72
36216738--36216879	61	2.3	59	82	8	144	50	13	13	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36218997--36219290	43	6.8	43	76	10	226	25	15	26	32	1.96
36219041--36219290	129	1.9	129	86	3	351	25	16	26	32	1.96
36220654--36220947	43	6.8	43	76	10	226	25	15	26	32	1.96
36220698--36220947	129	1.9	129	86	3	351	25	16	26	32	1.96
36222840--36222889	22	2.2	24	82	13	61	42	0	30	28	1.56
36223141--36223178	16	2.3	16	95	4	67	15	0	26	57	1.38
36223195--36223284	18	5.2	18	69	10	80	23	1	12	63	1.35
36223157--36223266	50	2.2	50	91	0	175	20	2	17	59	1.50
36223233--36223284	12	4.3	12	82	0	50	25	1	7	65	1.30
36223596--36223727	62	2.1	61	88	4	194	25	6	20	47	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131