Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  122  of  131  ( 15627 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40241052--40241312
114
2.3
113
81
4
292
27
13
19
39
1.89
40247808--40247924
42
2.9
42
72
11
118
35
22
15
26
1.94
40248048--40248073
13
2.0
13
100
0
52
46
7
0
46
1.31
40248048--40248100
15
3.6
14
77
20
54
49
13
0
37
1.42
40248049--40248098
17
3.1
16
76
21
50
48
14
0
38
1.44
40251360--40251474
41
2.8
41
81
0
140
24
20
27
26
1.99
40251675--40251707
7
4.7
7
96
0
57
27
0
33
39
1.57
40252778--40252802
11
2.3
11
100
0
50
0
48
8
44
1.32
40256430--40256473
22
1.9
22
86
9
61
56
4
0
38
1.20
40256504--40256724
43
5.1
43
89
0
217
20
19
31
28
1.97
40256530--40256727
43
4.6
43
92
0
315
19
19
33
27
1.96
40259183--40259308
45
2.8
45
96
0
225
36
14
34
14
1.86
40265750--40265788
16
2.4
16
91
0
60
76
2
2
17
1.01
40265968--40266088
3
40.3
3
78
12
115
63
0
5
30
1.18
40266760--40266798
14
2.8
14
84
11
53
76
2
17
2
1.01
40270880--40270959
41
2.0
41
94
0
142
30
17
22
30
1.97
40270881--40270986
41
2.6
41
86
0
122
29
17
23
29
1.97
40277702--40277738
9
4.1
9
89
0
56
45
10
10
32
1.74
40279763--40279907
43
3.4
43
79
4
150
28
26
17
26
1.98
40286964--40287008
21
2.1
22
91
4
74
55
2
4
37
1.32
40295244--40295577
174
1.9
174
81
6
399
32
15
29
22
1.95
40305418--40305664
119
2.0
120
90
3
399
38
14
17
29
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40306737--40306778
21
2.0
21
100
0
84
23
28
19
28
1.98
40310366--40310443
21
3.6
21
81
10
95
38
6
12
42
1.69
40310411--40310455
23
2.0
23
86
4
65
33
4
15
46
1.66
40311007--40311739
104
7.0
104
97
1
1339
35
8
3
52
1.48
40315459--40315502
21
2.0
22
91
8
72
81
0
18
0
0.68
40315458--40315502
6
8.0
6
95
5
69
82
0
17
0
0.68
40315459--40315500
5
7.8
5
97
2
57
83
0
16
0
0.65
40316753--40317400
44
14.7
45
78
4
566
30
15
25
29
1.95
40316730--40317367
132
4.8
132
89
1
884
28
15
24
30
1.96
40316974--40317400
177
2.4
176
86
2
561
30
14
24
29
1.95
40317736--40317828
19
5.0
18
77
10
73
36
8
17
37
1.80
40317747--40317821
19
3.8
19
87
6
114
37
8
16
38
1.78
40317811--40317854
22
2.0
23
81
4
54
34
6
15
43
1.74
40328332--40328388
8
6.5
8
77
16
51
57
0
1
40
1.09
40328336--40328388
18
2.9
18
81
10
63
54
0
1
43
1.11
40328614--40328831
9
23.9
9
70
15
112
60
3
2
33
1.27
40328610--40328706
35
2.7
35
75
9
90
63
4
2
29
1.24
40328631--40328694
26
2.4
27
82
5
69
64
3
3
29
1.24
40328614--40328783
19
9.3
19
70
19
96
62
2
1
32
1.21
40328690--40328762
29
2.6
27
76
10
76
60
1
1
36
1.14
40328752--40328801
20
2.8
17
77
16
55
60
8
0
32
1.26
40329852--40329973
29
4.2
28
76
11
106
27
0
5
67
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40329852--40329948
38
2.6
40
76
14
50
24
0
6
69
1.12
40329845--40329943
9
10.7
9
72
16
60
24
0
6
69
1.10
40329852--40329973
10
12.8
9
73
17
77
27
0
5
67
1.13
40330236--40330304
17
3.9
17
74
24
54
63
4
0
31
1.14
40330246--40330278
9
3.7
9
88
12
50
69
0
0
30
0.88
40330224--40330304
27
3.0
26
75
20
69
62
6
0
30
1.19
40330687--40330737
24
2.1
24
85
7
68
5
11
5
76
1.14
40331632--40331977
89
3.9
89
89
4
470
25
10
17
47
1.78
40331633--40331970
174
1.9
173
87
1
489
24
10
17
48
1.77
40332583--40332718
10
13.8
10
65
16
54
32
2
2
62
1.22
40332609--40332736
30
4.4
30
73
15
85
30
2
3
64
1.22
40332585--40332734
10
15.4
9
66
15
50
30
2
2
64
1.18
40332695--40332735
9
4.6
9
82
11
57
29
0
0
70
0.87
40334190--40334222
2
17.0
2
87
6
50
48
0
0
51
1.00
40343404--40343496
24
3.9
24
73
10
91
40
2
8
48
1.46
40343393--40343485
48
1.9
48
97
0
177
40
2
10
46
1.51
40345296--40345333
17
2.3
16
86
13
51
55
2
7
34
1.43
40354405--40354445
21
2.0
21
90
0
64
29
7
39
24
1.82
40354440--40354487
12
4.0
12
83
0
60
29
0
54
16
1.43
40354441--40354490
24
2.1
24
88
7
75
30
0
52
18
1.46
40354456--40354494
6
6.5
6
81
0
51
30
0
51
17
1.46
40361713--40361739
3
9.0
3
100
0
54
66
0
33
0
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40362049--40362116
30
2.1
35
84
13
92
54
0
1
44
1.09
40369863--40369979
41
2.8
42
82
5
132
31
28
19
20
1.97
40387828--40387859
2
16.0
2
100
0
64
50
0
50
0
1.00
40395726--40396000
126
2.2
125
88
3
408
30
19
16
34
1.94
40396094--40396439
97
3.7
91
87
6
448
38
19
2
40
1.64
40396052--40396439
186
2.1
184
85
6
514
38
19
2
39
1.64
40402198--40402250
2
26.5
2
92
0
88
0
47
1
50
1.12
40408510--40408568
31
2.0
29
80
9
66
57
13
6
22
1.59
40410562--40410605
18
2.5
17
85
10
61
38
0
9
52
1.33
40410569--40410830
130
2.0
131
99
0
517
33
9
13
42
1.78
40411886--40411912
2
13.5
2
100
0
54
51
0
0
48
1.00
40414609--40414659
22
2.4
21
80
6
59
47
7
3
41
1.51
40421905--40421995
47
1.9
47
93
4
157
9
9
4
75
1.16
40421906--40422009
25
4.2
26
77
11
103
9
9
3
76
1.12
40421982--40422008
14
1.9
14
100
0
54
7
11
0
81
0.87
40421970--40422019
25
2.0
25
84
7
66
6
12
4
78
1.08
40430391--40430518
51
2.5
51
80
0
148
27
20
25
26
1.99
40430865--40431006
44
3.2
44
86
2
187
29
17
25
27
1.97
40430535--40430885
132
2.7
132
93
2
598
28
20
25
25
1.99
40432224--40432309
3
28.0
3
85
4
100
26
1
6
65
1.25
40435574--40435647
13
6.4
12
66
20
50
55
0
0
44
0.99
40435567--40435640
22
3.3
22
88
1
112
54
0
0
45
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40435670--40435725
15
3.9
14
77
13
51
73
1
8
16
1.17
40436799--40436858
29
2.1
29
93
0
102
46
10
0
43
1.37
40437704--40437735
15
2.1
16
94
5
57
25
12
9
53
1.68
40438423--40438485
22
2.8
22
74
11
74
42
12
17
26
1.85
40438579--40438617
19
2.1
19
85
9
53
30
0
2
66
1.05
40446024--40446055
15
2.1
15
94
0
55
15
6
9
68
1.36
40446996--40447266
22
12.2
21
77
11
256
43
16
9
29
1.80
40447005--40447269
44
6.0
44
87
3
370
43
15
9
30
1.79
40448058--40448213
43
3.6
42
79
7
145
30
28
17
24
1.97
40452399--40452425
2
13.5
2
100
0
54
48
0
0
51
1.00
40453295--40453407
43
2.7
43
84
4
140
31
24
16
26
1.96
40456218--40456290
28
2.7
28
82
4
96
47
1
4
46
1.30
40460837--40460905
23
3.0
23
85
8
88
36
20
24
18
1.95
40469116--40469168
24
2.2
25
82
3
63
26
20
5
47
1.72
40472298--40472353
9
6.2
9
78
15
62
82
0
16
1
0.76
40472301--40472344
20
2.2
20
91
0
70
84
0
13
2
0.73
40472290--40472357
29
2.4
29
85
9
95
82
0
13
4
0.82
40472296--40472359
17
3.8
16
85
6
74
82
0
14
3
0.78
40472296--40472360
9
7.6
8
78
14
60
81
0
15
3
0.81
40473244--40474246
50
20.2
50
72
4
607
31
21
20
25
1.98
40473232--40473924
100
6.9
100
84
1
859
32
21
20
25
1.98
40473900--40474074
91
1.9
91
88
2
262
30
25
20
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40473850--40474117
141
1.9
141
83
1
349
30
24
20
24
1.98
40473763--40474217
241
1.9
241
81
0
550
30
22
20
25
1.98
40474345--40474462
45
2.7
44
80
7
130
29
21
19
29
1.97
40482943--40482997
25
2.2
25
83
0
65
40
14
5
40
1.69
40483046--40483095
20
2.5
20
80
6
57
36
22
8
34
1.83
40483267--40483335
23
3.0
23
85
8
88
36
20
24
18
1.95
40485621--40485649
15
1.9
15
100
0
58
41
37
0
20
1.53
40490613--40490662
21
2.3
22
82
3
66
36
6
16
42
1.72
40492156--40492204
24
2.0
24
88
7
73
38
2
2
57
1.22
40498020--40498060
9
4.6
9
84
0
55
46
12
12
29
1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131