genome.fa.s9.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  50  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16617131--16617357	107	2.1	107	94	0	393	22	23	17	37	1.94
16617319--16617398	27	3.0	27	90	3	117	26	26	15	32	1.95
16619518--16619594	28	2.6	28	78	13	84	28	32	12	25	1.93
16619589--16619727	57	2.4	57	87	0	206	25	24	17	32	1.97
16619604--16619701	29	3.4	29	64	13	76	25	26	16	31	1.96
16620193--16620222	5	6.0	5	100	0	60	40	20	0	40	1.52
16622384--16622535	40	3.8	39	82	8	157	34	18	28	18	1.94
16622434--16622535	20	5.1	20	72	4	89	31	20	31	16	1.95
16622419--16622536	40	3.0	40	91	2	184	33	19	29	17	1.95
16626574--16626777	91	2.2	91	89	1	311	37	12	4	45	1.63
16627308--16627339	13	2.3	15	89	10	50	46	0	0	53	1.00
16632452--16632488	16	2.3	16	95	0	65	35	5	37	21	1.77
16635611--16635648	19	2.1	18	90	5	58	26	5	2	65	1.27
16635613--16635660	19	2.5	19	83	6	53	29	6	2	62	1.31
16640470--16640551	40	2.0	40	100	0	164	42	9	32	14	1.79
16641898--16641926	13	2.1	14	93	6	51	37	6	31	24	1.82
16649190--16649555	44	8.5	43	73	12	225	28	21	22	27	1.99
16649185--16649607	217	2.0	216	92	0	711	28	20	22	27	1.99
16651359--16651620	43	6.1	43	100	0	524	23	9	9	58	1.57
16651394--16651462	21	3.2	21	62	18	52	24	5	10	59	1.52
16651822--16652002	98	1.8	98	100	0	362	26	9	25	38	1.87
16654350--16654375	13	2.0	13	100	0	52	38	0	15	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16655009--16655133	21	6.0	21	71	5	92	18	19	18	44	1.88
16655005--16655053	20	2.4	20	75	3	53	22	12	16	48	1.79
16655050--16655175	42	3.0	43	79	4	123	16	21	18	43	1.88
16665174--16665264	21	4.4	21	76	2	85	20	18	18	41	1.90
16665192--16665340	42	3.6	42	79	3	149	18	20	18	42	1.89
16665750--16665848	49	2.0	50	98	2	191	36	9	8	46	1.65
16670497--16670527	6	5.2	6	100	0	62	16	0	48	35	1.46
16675505--16675603	47	2.1	47	96	0	180	20	14	8	57	1.62
16686071--16686139	16	4.3	16	94	0	111	40	5	31	21	1.77
16686119--16686204	46	1.9	44	88	4	127	25	8	27	38	1.84
16686560--16686592	14	2.3	15	89	5	50	75	6	0	18	1.00
16687624--16687761	59	2.4	58	86	4	188	39	19	17	23	1.92
16700957--16700989	14	2.4	14	90	5	50	69	0	6	24	1.10
16702653--16703161	44	11.7	44	71	16	314	27	22	21	29	1.99
16702664--16702991	173	1.9	173	81	9	402	27	21	21	29	1.99
16702656--16703180	217	2.4	217	93	0	899	26	22	20	29	1.99
16704408--16704445	15	2.6	15	84	16	53	13	21	0	65	1.26
16705220--16705276	25	2.3	25	78	6	62	57	5	14	22	1.56
16707142--16707442	148	2.0	148	89	0	467	21	28	11	38	1.88
16714250--16714331	27	3.0	27	81	0	92	24	32	18	24	1.97
16714821--16714859	20	1.9	21	84	5	53	30	20	23	25	1.98
16715507--16715541	18	1.9	18	88	11	54	54	34	2	8	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16728085--16728154	33	2.2	32	82	10	81	30	7	8	54	1.58
16737168--16737253	21	4.0	22	77	10	88	38	25	20	15	1.92
16737914--16737949	3	12.0	3	100	0	72	66	0	0	33	0.92
16738329--16738367	20	2.0	20	94	0	69	53	0	0	46	1.00
16742842--16742887	19	2.3	22	78	14	55	69	0	23	6	1.11
16743626--16743718	36	2.6	37	80	10	102	31	15	20	33	1.93
16746538--16746611	25	3.0	25	69	11	64	31	18	27	22	1.98
16748790--16748959	84	2.0	85	98	1	333	48	8	7	35	1.60
16748945--16748992	20	2.5	20	86	6	64	58	4	0	37	1.18
16749045--16749097	27	1.9	28	84	3	72	43	3	7	45	1.50
16750098--16750260	87	1.9	86	83	6	213	39	20	13	26	1.89
16751180--16751284	45	2.3	45	78	3	113	38	20	18	23	1.93
16751234--16751536	138	2.2	138	87	1	437	33	15	25	25	1.95
16752014--16752232	28	7.9	27	79	9	185	55	6	14	22	1.63
16752014--16752230	56	3.9	57	80	10	236	56	6	13	23	1.62
16752014--16752230	83	2.6	82	80	9	251	56	6	13	23	1.62
16756727--16756759	15	2.3	15	89	5	50	42	9	0	48	1.35
16757993--16758133	62	2.3	63	81	5	169	43	14	4	38	1.65
16757993--16758153	62	2.6	61	77	11	155	42	14	4	39	1.65
16759492--16760182	345	2.0	346	99	0	1366	22	26	15	35	1.94
16762316--16762402	33	2.7	33	79	12	99	44	18	9	27	1.80
16762393--16762432	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16766591--16766660	10	6.6	10	78	16	61	32	1	5	60	1.29
16766584--16766651	23	3.0	23	89	6	95	32	2	7	57	1.41
16776887--16776944	12	4.4	13	73	23	50	10	22	41	25	1.85
16785518--16785543	6	4.3	6	100	0	52	50	0	0	50	1.00
16787637--16787673	17	2.2	17	90	4	58	40	18	10	29	1.85
16789753--16789836	40	2.1	41	97	2	161	35	21	5	36	1.78
16789885--16789918	11	2.8	12	91	8	52	35	8	11	44	1.72
16791534--16791575	7	6.1	7	83	5	50	7	50	2	40	1.43
16791537--16791576	13	3.0	13	82	7	53	5	52	2	40	1.37
16791534--16791571	20	1.9	20	94	0	67	7	47	2	42	1.46
16793808--16793876	22	2.9	23	78	12	77	49	1	2	46	1.25
16795540--16795569	3	10.0	3	100	0	60	66	0	0	33	0.92
16796331--16796400	28	2.5	28	93	4	115	38	10	1	50	1.45
16796402--16796439	16	2.3	17	86	4	51	86	5	2	5	0.76
16796468--16796529	27	2.3	27	77	0	88	25	17	46	9	1.79
16797466--16797516	18	2.8	18	87	3	66	25	0	7	66	1.18
16797523--16797548	13	2.0	13	100	0	52	76	0	0	23	0.78
16799563--16799614	25	2.1	25	100	0	104	23	21	23	32	1.98
16800134--16800237	10	9.1	10	69	24	55	0	31	0	67	0.97
16800132--16800219	37	2.4	37	87	10	121	1	32	0	65	1.00
16800415--16800472	24	2.4	24	83	11	66	50	0	10	39	1.37
16802790--16802828	3	13.0	3	94	0	69	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16803106--16803138	16	2.1	16	94	0	57	21	12	3	63	1.41
16809787--16809853	33	2.0	33	94	0	116	26	11	19	41	1.86
16820159--16820192	17	2.1	17	88	5	52	20	5	11	61	1.50
16821892--16821940	23	2.1	23	85	7	64	20	16	22	40	1.91
16823510--16823534	7	3.6	7	100	0	50	56	0	0	44	0.99
16823952--16824044	19	4.8	19	89	2	150	37	10	15	36	1.82
16824605--16824656	25	2.1	25	85	7	70	32	3	5	57	1.40
16825584--16826464	98	9.0	98	99	0	1699	28	12	24	34	1.91
16827901--16828099	96	2.1	97	98	0	382	33	9	7	50	1.61
16835749--16835945	96	2.0	97	99	0	387	54	9	4	32	1.51
16856106--16856142	19	1.9	19	88	0	56	56	2	0	40	1.13
16857903--16857940	20	1.9	20	84	10	51	68	18	10	2	1.30
16859180--16859384	43	4.8	43	81	4	216	28	29	18	23	1.98
16859308--16859398	43	2.1	43	81	0	101	32	24	16	26	1.96
16861383--16861419	15	2.5	15	95	0	65	54	18	10	16	1.71
16861645--16861686	22	1.9	22	85	0	57	61	4	4	28	1.36
16861932--16862086	41	3.8	41	86	3	195	29	26	21	21	1.99
16862031--16862142	56	2.0	55	87	1	161	33	25	23	17	1.97
16862202--16862317	40	2.9	39	82	5	144	26	19	18	34	1.96
16867080--16867319	47	5.1	47	84	7	312	40	6	2	51	1.39
16867208--16867237	13	2.2	14	94	5	53	33	3	0	63	1.11
16867088--16867319	93	2.5	94	90	7	357	40	6	2	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16870420--16870584	56	3.0	55	85	3	206	29	24	15	31	1.95
16875005--16875037	8	4.1	8	85	14	50	60	3	0	36	1.12
16886602--16886673	27	2.7	27	84	0	90	16	25	34	23	1.95
16886805--16886830	6	4.3	6	100	0	52	19	0	0	80	0.71
16886928--16887139	94	2.3	94	100	0	424	22	0	22	54	1.45
16890905--16890984	27	3.2	26	65	26	64	33	8	6	51	1.58
16890706--16891020	48	6.6	48	91	2	463	30	9	9	50	1.66
16891322--16891384	31	2.0	32	84	6	83	25	14	42	17	1.87
16892229--16892255	14	1.9	14	100	0	54	37	3	22	37	1.72
16892230--16892263	14	2.4	14	90	0	50	41	2	17	38	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131