genome.fa.s9.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  28  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9058887--9058925	18	2.2	18	86	9	53	33	0	10	56	1.33
9059786--9059823	18	2.3	16	86	13	51	23	0	0	76	0.79
9061783--9061814	16	1.9	17	93	6	57	43	3	15	37	1.63
9066703--9067457	375	2.0	375	98	0	1447	36	17	11	34	1.86
9068038--9068114	25	3.1	25	82	0	91	35	25	19	19	1.95
9068748--9069040	152	1.9	152	95	0	532	30	23	9	35	1.88
9073440--9073507	24	2.9	23	80	4	73	16	41	5	36	1.72
9074975--9075005	15	2.0	16	93	6	55	80	0	0	19	0.71
9080706--9080742	18	2.1	18	90	10	58	40	10	45	2	1.53
9085517--9085542	2	13.0	2	100	0	52	50	0	0	50	1.00
9085519--9085783	132	2.0	133	99	0	523	34	17	15	32	1.91
9090626--9090671	16	3.1	15	76	11	51	67	2	0	30	1.03
9098768--9098807	20	2.0	21	85	14	57	65	5	2	27	1.27
9098791--9098829	12	3.2	12	89	7	53	69	2	2	25	1.14
9098767--9098815	21	2.3	21	80	13	57	63	4	2	30	1.24
9098903--9099196	146	2.0	147	99	0	581	36	5	11	46	1.63
9109341--9109373	15	2.2	15	89	10	50	45	0	6	48	1.27
9111120--9111167	22	2.3	20	78	7	51	50	18	0	31	1.48
9117592--9117700	25	4.4	25	69	17	75	28	17	27	26	1.98
9118898--9118929	15	2.1	15	94	0	55	68	9	6	15	1.36
9120376--9120534	79	2.0	80	98	1	311	42	19	8	28	1.81
9123191--9123238	25	2.0	23	84	8	60	54	8	0	37	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9132175--9132237	33	1.9	32	81	12	74	57	3	6	33	1.40
9132271--9132308	3	12.7	3	89	10	60	68	0	0	31	0.90
9132278--9132308	16	1.9	16	100	0	62	67	0	0	32	0.91
9132767--9132809	21	2.0	23	86	9	63	48	18	6	25	1.73
9133179--9133545	44	8.6	44	70	11	185	28	22	20	29	1.98
9133556--9133764	100	2.1	100	84	3	269	25	21	20	32	1.97
9133842--9133936	50	1.9	50	84	0	127	24	23	23	29	1.99
9144879--9144933	19	2.7	21	83	11	78	38	12	9	40	1.75
9154821--9154848	7	4.0	7	100	0	56	85	0	0	14	0.59
9154844--9155052	91	2.3	90	79	13	234	36	17	9	36	1.82
9155210--9155292	20	4.2	20	72	9	64	66	6	4	22	1.34
9155208--9155292	29	2.9	28	70	5	71	65	5	4	23	1.34
9155208--9155294	19	4.5	19	76	8	70	64	5	4	25	1.35
9155800--9156007	93	2.3	92	82	4	249	40	11	18	29	1.85
9156441--9156513	27	2.8	25	80	8	92	50	1	0	47	1.09
9161038--9161062	6	4.2	6	100	0	50	48	0	0	52	1.00
9162119--9162157	17	2.4	17	84	16	55	53	0	12	33	1.39
9165732--9165775	23	1.9	22	82	17	54	36	25	0	38	1.56
9165822--9165908	45	1.9	45	95	0	156	34	24	16	25	1.95
9169041--9169128	25	3.6	25	76	4	81	31	18	28	21	1.97
9169089--9169149	24	2.6	23	87	7	86	36	21	26	16	1.94
9169095--9169295	73	2.7	71	71	12	163	34	20	26	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9169368--9169431	25	2.6	25	92	0	110	42	18	25	14	1.88
9171185--9171226	20	2.0	21	95	4	77	14	26	9	50	1.73
9179876--9179900	13	1.9	13	100	0	50	40	24	4	32	1.73
9187105--9187151	20	2.5	19	75	6	51	40	2	2	55	1.24
9187377--9187947	26	22.0	26	99	0	1124	34	30	11	23	1.90
9192537--9192569	2	17.0	2	87	6	50	48	0	3	48	1.17
9192537--9192566	15	2.0	15	93	0	51	46	0	3	50	1.18
9192455--9192637	96	1.9	96	93	2	314	42	13	6	38	1.68
9193074--9193283	75	2.7	75	78	7	194	43	16	4	34	1.69
9193146--9193349	75	2.7	75	83	0	228	46	19	3	30	1.67
9194634--9194658	13	1.9	13	100	0	50	40	24	4	32	1.73
9196670--9196762	26	3.7	26	77	7	70	37	22	22	17	1.94
9197228--9197271	5	8.6	5	85	5	61	40	18	0	40	1.50
9198507--9198556	25	2.0	26	88	11	77	40	10	4	46	1.56
9198597--9198630	15	2.3	15	90	5	52	35	23	0	41	1.55
9205020--9205067	24	2.0	24	88	4	71	43	2	0	54	1.12
9205255--9205315	3	20.7	3	93	3	106	65	1	32	0	1.02
9207380--9207542	77	2.1	75	82	4	184	26	8	12	52	1.67
9209022--9209252	46	5.0	46	94	1	374	27	24	9	38	1.86
9210459--9210491	17	1.9	17	100	0	66	57	18	0	24	1.40
9212971--9213020	26	1.9	26	84	8	66	18	16	20	46	1.85
9217582--9217636	19	3.0	19	73	5	51	60	16	0	23	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9217956--9217990	14	2.4	15	90	4	54	65	0	0	34	0.93
9220891--9220915	4	6.2	4	100	0	50	76	0	0	24	0.80
9225275--9225342	35	1.9	35	87	0	100	44	4	11	39	1.61
9225747--9225788	20	2.1	20	86	0	57	47	0	7	45	1.30
9228075--9228160	44	2.0	44	82	13	106	61	3	12	22	1.46
9234698--9234728	16	1.9	16	100	0	62	58	6	19	16	1.59
9248671--9248722	26	2.0	26	92	7	88	38	23	3	34	1.73
9248871--9248915	6	7.3	6	90	5	72	15	20	0	64	1.29
9249283--9249360	27	3.2	27	59	27	64	28	21	7	42	1.80
9249286--9249376	46	2.0	47	93	2	157	28	23	7	40	1.82
9260097--9260162	33	2.0	33	100	0	132	36	21	21	21	1.95
9262066--9262146	42	1.9	42	94	0	144	30	27	18	23	1.98
9262269--9262753	143	3.4	143	90	0	754	26	21	20	31	1.98
9264146--9264171	13	2.0	13	100	0	52	30	0	0	69	0.89
9265354--9265404	23	2.2	23	85	0	66	29	11	21	37	1.89
9266860--9266894	16	2.2	16	89	0	52	85	0	11	2	0.69
9271404--9271878	50	9.5	50	67	1	270	23	18	24	33	1.97
9271376--9272507	100	11.5	100	80	7	1057	23	19	24	32	1.97
9271376--9272507	200	5.8	200	83	3	1411	23	19	24	32	1.97
9271795--9271962	84	2.0	84	88	0	246	23	20	27	28	1.99
9271882--9272466	50	11.7	50	70	2	361	23	20	24	31	1.98
9280651--9280701	25	2.0	25	92	0	84	49	5	17	27	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9280676--9280735	30	2.0	31	86	3	86	43	6	20	30	1.77
9285293--9285381	25	3.1	30	81	12	107	40	7	24	26	1.82
9290286--9290337	24	2.2	24	82	6	61	53	7	5	32	1.53
9294155--9294259	35	2.8	39	67	11	92	22	20	22	34	1.97
9304206--9304231	2	13.0	2	100	0	52	50	0	0	50	1.00
9314232--9314355	33	3.5	33	72	21	115	17	19	29	33	1.95
9343499--9343598	49	2.0	49	96	0	182	31	14	25	30	1.94
9346734--9347415	341	2.0	341	96	0	1265	29	21	14	34	1.92
9368109--9368340	115	2.0	116	98	0	448	34	6	17	42	1.74
9369324--9369468	49	3.0	49	78	4	148	31	25	19	24	1.98
9372946--9372985	20	2.0	20	90	0	62	27	10	12	50	1.72
9372932--9372997	35	1.9	34	90	6	107	31	7	13	46	1.71
9380103--9380142	14	2.9	14	84	0	53	32	7	17	42	1.77
9380111--9380177	34	1.9	35	87	3	100	31	10	13	44	1.77
9380126--9380165	20	2.0	20	85	0	53	27	12	12	47	1.77
9380158--9380242	32	2.6	31	76	9	89	25	10	18	44	1.82
9386346--9386502	41	3.8	41	83	0	197	33	26	21	18	1.96
9392920--9392969	24	2.1	24	92	0	82	46	18	6	30	1.73
9393761--9393874	41	2.8	41	80	5	131	35	26	19	19	1.95
9400737--9400766	9	3.3	9	90	0	51	40	0	3	56	1.16
9401031--9401077	23	2.0	23	100	0	94	34	12	12	40	1.82
9407066--9407341	73	3.7	72	77	9	270	44	5	10	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9407552--9407596	12	3.8	12	78	0	54	17	44	0	37	1.49
9424191--9424225	15	2.3	15	90	0	52	28	8	0	62	1.24
9424254--9424301	21	2.4	19	78	18	53	47	4	2	45	1.33
9426032--9426080	24	2.0	24	96	0	89	34	30	0	34	1.58
9428837--9428910	25	3.0	25	75	9	71	14	29	20	35	1.93
9428965--9429178	24	8.6	26	71	15	105	19	25	20	34	1.96
9439387--9439448	29	2.2	28	86	8	83	22	4	24	48	1.70
9455008--9455032	10	2.5	10	100	0	50	32	0	12	56	1.36
9464068--9464112	22	2.0	23	91	8	76	31	6	8	53	1.58
9470178--9470763	132	4.4	132	82	1	672	37	14	14	33	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131