Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  48  of  131  ( 15627 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15974796--15974857
20
3.0
21
71
15
67
50
4
3
41
1.40
15977907--15977937
16
1.9
16
93
0
53
9
19
25
45
1.81
15978405--15979012
257
2.3
259
90
3
929
27
25
19
26
1.99
15978405--15979015
132
4.7
132
89
4
889
27
25
19
26
1.99
15987220--15988018
414
2.0
383
84
13
1256
42
5
8
39
1.59
15998795--15998885
45
2.0
45
85
2
121
37
28
6
27
1.82
15998866--15998917
16
3.2
16
97
0
95
40
34
0
25
1.56
16004246--16004317
27
2.7
28
79
10
71
29
8
4
58
1.46
16004649--16004687
2
19.5
2
89
0
60
48
2
0
48
1.15
16004798--16004859
26
2.4
26
80
0
70
40
6
3
50
1.44
16004791--16004865
26
2.8
28
74
12
66
38
6
4
50
1.47
16007254--16007288
16
2.2
16
89
0
52
68
2
2
25
1.17
16007468--16007500
2
16.5
2
93
0
57
48
0
3
48
1.17
16009068--16009102
18
1.9
18
88
11
54
34
2
0
62
1.10
16009071--16009122
25
2.0
26
82
10
63
34
1
0
63
1.06
16009071--16009123
26
2.0
26
85
7
72
33
1
0
64
1.05
16009077--16009132
26
2.2
25
81
9
60
30
1
3
64
1.21
16010236--16010387
75
2.0
76
97
2
288
24
15
39
20
1.91
16012395--16012535
40
3.5
40
91
2
212
35
2
0
61
1.11
16012475--16012535
31
2.0
31
90
6
97
37
1
0
60
1.07
16013018--16013777
111
6.8
111
78
6
680
31
16
19
32
1.94
16013018--16013771
221
3.4
223
82
6
829
30
16
19
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16014583--16014833
43
5.9
43
82
2
240
26
28
19
24
1.99
16014771--16014863
41
2.2
42
83
5
109
34
24
15
25
1.94
16017499--16017575
22
3.7
21
72
18
61
70
5
1
23
1.15
16022335--16022450
53
2.2
53
90
0
178
59
3
10
26
1.46
16022962--16023045
26
3.2
26
61
12
62
60
0
16
22
1.35
16022962--16023047
28
3.1
28
64
12
79
61
0
16
22
1.34
16022656--16023162
56
9.1
56
91
3
765
53
0
20
25
1.47
16024312--16024874
108
5.3
107
86
4
682
29
19
18
32
1.96
16024637--16024792
49
3.1
49
67
13
127
28
17
18
34
1.94
16024312--16024932
105
5.9
106
86
3
751
29
19
18
33
1.95
16025799--16025831
12
2.8
12
100
0
66
54
0
9
36
1.32
16027176--16027247
36
2.0
36
94
0
126
45
12
4
37
1.61
16028638--16028781
37
3.6
40
71
11
107
34
23
14
27
1.94
16029230--16029300
25
3.0
25
67
20
62
50
1
1
46
1.18
16032433--16032481
14
3.2
15
82
8
55
46
0
4
48
1.20
16034226--16034251
2
13.0
2
100
0
52
50
0
0
50
1.00
16042765--16042798
13
2.7
13
90
4
52
26
2
8
61
1.40
16045350--16045386
2
19.0
2
94
5
67
0
0
48
51
1.00
16076667--16076700
15
2.3
15
90
10
52
32
2
0
64
1.08
16079265--16079315
27
2.0
27
81
14
63
31
3
7
56
1.46
16081067--16081103
14
2.6
14
86
0
56
29
8
29
32
1.86
16083166--16083240
37
2.0
37
100
0
150
33
18
16
32
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16083172--16083231
19
3.2
19
65
21
54
33
16
15
35
1.90
16083644--16083963
103
3.1
103
99
0
631
34
9
21
35
1.85
16087665--16087690
7
3.7
7
100
0
52
42
0
0
57
0.98
16087694--16087719
8
3.2
8
100
0
52
76
0
11
11
1.01
16087761--16087791
4
7.8
4
92
0
53
77
0
22
0
0.77
16088667--16088802
40
3.5
40
73
10
120
25
17
25
32
1.97
16088668--16088768
37
2.6
38
76
6
96
25
18
24
30
1.98
16090960--16090990
15
2.0
16
93
6
55
77
0
0
22
0.77
16098049--16098099
26
2.0
24
85
7
66
33
0
0
66
0.92
16099041--16099086
23
2.0
23
83
8
58
39
8
17
34
1.80
16099864--16099997
67
2.0
68
83
4
173
39
5
7
47
1.56
16110228--16110540
155
2.0
156
99
0
619
33
11
7
46
1.68
16110610--16110645
6
6.0
6
100
0
72
0
0
16
83
0.65
16122217--16122305
45
2.0
44
91
2
142
37
10
22
30
1.87
16124946--16124979
14
2.4
14
90
0
50
50
8
2
38
1.49
16130250--16130293
18
2.4
18
88
0
70
25
27
29
18
1.98
16130295--16130453
43
3.7
42
84
4
194
31
27
17
23
1.97
16133707--16133778
33
2.1
35
82
5
85
19
33
18
29
1.95
16138734--16138759
2
13.0
2
100
0
52
50
0
0
50
1.00
16139028--16139057
14
2.1
14
100
0
60
23
6
30
40
1.80
16156936--16156966
9
3.3
9
95
4
53
29
0
0
70
0.87
16163510--16163561
27
1.9
27
100
0
104
25
26
26
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16166606--16166640
18
2.0
17
88
5
52
45
0
0
54
0.99
16166456--16173617
156
45.9
156
99
0
14288
46
6
3
43
1.45
16166762--16166796
18
2.0
17
88
5
52
45
0
0
54
0.99
16166918--16166952
18
2.0
17
88
5
52
45
0
0
54
0.99
16167074--16167108
18
2.0
17
88
5
52
45
0
0
54
0.99
16167230--16167264
18
2.0
17
88
5
52
45
0
0
54
0.99
16167386--16167420
18
2.0
17
88
5
52
45
0
0
54
0.99
16167542--16167576
18
2.0
17
88
5
52
45
0
0
54
0.99
16167698--16167732
18
2.0
17
88
5
52
45
0
0
54
0.99
16167854--16167888
18
2.0
17
88
5
52
45
0
0
54
0.99
16168010--16168044
18
2.0
17
88
5
52
45
0
0
54
0.99
16168166--16168200
18
2.0
17
88
5
52
45
0
0
54
0.99
16168322--16168356
18
2.0
17
88
5
52
45
0
0
54
0.99
16168478--16168512
18
2.0
17
88
5
52
45
0
0
54
0.99
16168634--16168668
18
2.0
17
88
5
52
45
0
0
54
0.99
16168790--16168824
18
2.0
17
88
5
52
45
0
0
54
0.99
16168946--16168980
18
2.0
17
88
5
52
45
0
0
54
0.99
16169102--16169136
18
2.0
17
88
5
52
45
0
0
54
0.99
16169258--16169292
18
2.0
17
88
5
52
45
0
0
54
0.99
16169414--16169448
18
2.0
17
88
5
52
45
0
0
54
0.99
16169570--16169604
18
2.0
17
88
5
52
45
0
0
54
0.99
16169726--16169760
18
2.0
17
88
5
52
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16169882--16169916
18
2.0
17
88
5
52
45
0
0
54
0.99
16170038--16170072
18
2.0
17
88
5
52
45
0
0
54
0.99
16170194--16170228
18
2.0
17
88
5
52
45
0
0
54
0.99
16170350--16170384
18
2.0
17
88
5
52
45
0
0
54
0.99
16170506--16170540
18
2.0
17
88
5
52
45
0
0
54
0.99
16170662--16170696
18
2.0
17
88
5
52
45
0
0
54
0.99
16170818--16170852
18
2.0
17
88
5
52
45
0
0
54
0.99
16170974--16171008
18
2.0
17
88
5
52
45
0
0
54
0.99
16171130--16171164
18
2.0
17
88
5
52
45
0
0
54
0.99
16171286--16171320
18
2.0
17
88
5
52
45
0
0
54
0.99
16171442--16171476
18
2.0
17
88
5
52
45
0
0
54
0.99
16171598--16171632
18
2.0
17
88
5
52
45
0
0
54
0.99
16171754--16171788
18
2.0
17
88
5
52
45
0
0
54
0.99
16171910--16171944
18
2.0
17
88
5
52
45
0
0
54
0.99
16172066--16172100
18
2.0
17
88
5
52
45
0
0
54
0.99
16172222--16172256
18
2.0
17
88
5
52
45
0
0
54
0.99
16172378--16172412
18
2.0
17
88
5
52
45
0
0
54
0.99
16172534--16172568
18
2.0
17
88
5
52
45
0
0
54
0.99
16172690--16172724
18
2.0
17
88
5
52
45
0
0
54
0.99
16172846--16172880
18
2.0
17
88
5
52
45
0
0
54
0.99
16173002--16173036
18
2.0
17
88
5
52
45
0
0
54
0.99
16173158--16173192
18
2.0
17
88
5
52
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16173314--16173348
18
2.0
17
88
5
52
45
0
0
54
0.99
16173470--16173518
15
2.9
18
80
20
61
44
0
0
55
0.99
16173470--16173524
15
3.4
16
80
16
53
43
0
1
54
1.10
16173646--16173754
44
2.6
40
74
17
112
33
27
6
32
1.82
16173740--16173775
16
2.2
16
100
0
72
38
36
0
25
1.56
16179908--16179976
28
2.5
28
77
15
72
43
1
1
53
1.18
16179945--16179978
10
3.5
10
92
4
52
41
0
0
58
0.98
16180960--16181039
41
2.0
41
85
5
108
38
0
23
37
1.55
16188807--16188834
14
2.0
14
100
0
56
35
14
14
35
1.86
16202225--16202252
6
4.7
6
100
0
56
17
0
0
82
0.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131