genome.fa.s9.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  105  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34795073--34795107	1	35.0	1	91	0	52	94	0	2	2	0.37
34796261--34796310	20	2.4	21	90	3	75	28	12	24	36	1.91
34802697--34802751	27	2.0	27	100	0	110	56	10	21	10	1.64
34811663--34811759	40	2.5	39	83	5	126	29	26	18	24	1.98
34811667--34811799	37	3.4	37	79	9	115	32	24	18	24	1.97
34812712--34812756	16	2.6	18	74	19	51	0	20	8	71	1.12
34813271--34813307	9	4.1	9	92	0	65	45	13	10	29	1.77
34814003--34814033	5	6.2	5	100	0	62	19	19	19	41	1.90
34814256--34814316	27	2.3	25	76	15	59	67	4	3	24	1.26
34821661--34821685	12	2.1	12	100	0	50	16	24	36	24	1.94
34821852--34821900	25	1.9	26	91	4	82	28	10	6	55	1.57
34821979--34822028	22	2.5	19	79	17	57	46	2	0	52	1.12
34821985--34822028	22	2.0	22	100	0	88	50	0	0	50	1.00
34824704--34824748	17	2.6	17	89	3	63	42	0	57	0	0.98
34824709--34824748	6	6.8	6	91	5	64	45	0	55	0	0.99
34832649--34832720	35	2.1	35	100	0	144	36	16	5	41	1.72
34834190--34834223	10	3.1	11	87	12	52	50	2	0	47	1.16
34834745--34834771	10	2.7	10	100	0	54	29	22	7	40	1.81
34843201--34843256	30	2.0	30	82	10	73	53	7	3	35	1.46
34843654--34843692	18	2.2	18	90	9	62	23	2	2	71	1.10
34849098--34849130	6	5.8	6	92	7	52	81	0	18	0	0.68
34849098--34849128	16	1.9	16	100	0	62	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34863467--34863668	107	1.9	107	98	0	395	34	22	16	26	1.95
34873855--34873884	15	2.0	15	93	0	51	0	30	26	43	1.55
34874303--34874471	90	1.9	90	85	4	234	29	17	22	30	1.97
34884910--34885158	93	2.7	93	79	11	264	39	16	8	35	1.79
34885264--34885385	26	4.6	25	72	17	86	66	0	3	30	1.08
34885317--34885383	8	7.9	8	73	17	55	68	0	4	26	1.08
34885327--34885403	18	4.2	19	83	8	81	68	1	3	25	1.14
34885317--34885402	10	9.8	9	70	24	51	67	1	4	26	1.17
34885581--34885651	19	3.7	19	72	18	58	28	7	2	61	1.36
34886313--34886355	13	3.4	13	83	6	52	62	11	2	23	1.40
34886379--34886445	9	7.4	9	81	0	80	25	5	22	46	1.74
34886379--34886445	27	2.5	27	92	0	107	25	5	22	46	1.74
34886855--34886896	1	42.0	1	85	0	57	2	92	0	4	0.44
34886855--34886896	16	2.6	16	92	3	66	2	92	0	4	0.44
34886989--34887067	27	2.9	27	79	5	79	34	12	31	21	1.91
34890209--34890261	22	2.4	22	78	12	63	15	11	11	62	1.55
34891438--34891462	2	12.5	2	100	0	50	48	0	0	52	1.00
34894435--34894479	17	2.6	18	82	7	65	55	0	6	37	1.26
34900916--34901027	56	2.0	56	96	0	206	35	3	35	25	1.73
34902659--34902730	36	2.0	36	97	0	135	37	2	12	47	1.56
34903445--34903483	19	2.1	19	85	0	51	58	2	0	38	1.12
34903484--34903518	18	1.9	18	88	11	54	62	0	2	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34911977--34912170	109	1.8	107	85	3	273	34	19	15	29	1.93
34912307--34912394	4	21.8	4	72	15	65	70	4	4	20	1.23
34912307--34912419	33	3.2	33	76	15	86	70	4	3	21	1.20
34914506--34914883	46	8.7	43	75	9	259	27	23	20	28	1.99
34914505--34914794	130	2.2	130	91	0	454	26	23	22	27	1.99
34914929--34915673	87	8.8	89	81	7	535	25	24	21	29	1.99
34914958--34915098	44	3.2	44	69	15	121	27	24	23	24	2.00
34915103--34915239	68	2.0	69	89	1	213	24	24	18	32	1.97
34915201--34915427	44	5.2	44	63	16	130	28	22	21	27	1.99
34915171--34915675	87	5.8	87	89	0	771	25	23	20	29	1.99
34931092--34931118	3	9.0	3	100	0	54	33	0	0	66	0.92
34933878--34933976	40	2.5	40	82	4	123	29	24	18	28	1.98
34934180--34934226	24	2.0	24	84	16	62	51	17	0	31	1.46
34934635--34934870	120	1.9	121	95	3	429	40	18	0	41	1.54
34935009--34935078	4	17.0	4	85	5	95	0	27	2	70	1.02
34956702--34956733	9	3.7	9	91	8	57	28	0	0	71	0.86
34956669--34956748	41	2.0	41	89	0	124	33	3	0	62	1.13
34956703--34956732	8	3.6	8	95	4	51	30	0	0	70	0.88
34956679--34956704	11	2.4	11	100	0	52	38	7	0	53	1.30
34958557--34958581	13	1.9	13	100	0	50	72	4	0	24	1.02
34959194--34959290	51	1.9	51	86	0	140	50	19	4	25	1.65
34960204--34960238	17	2.1	17	88	0	52	40	5	11	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34964932--34964980	24	2.1	23	81	11	55	59	6	4	30	1.41
34967914--34967964	27	2.0	27	84	7	70	17	23	7	50	1.72
34970236--34970261	13	2.0	13	100	0	52	53	0	0	46	1.00
34991928--34992231	151	2.0	152	98	0	592	44	14	7	33	1.74
35013554--35013596	18	2.4	18	80	7	52	46	2	0	51	1.13
35014130--35014155	4	6.5	4	100	0	52	23	0	0	76	0.78
35014755--35014824	31	2.3	31	87	0	104	52	12	7	27	1.65
35029165--35029206	19	2.3	19	92	8	70	54	4	0	40	1.21
35032718--35032742	12	2.1	12	100	0	50	44	0	0	56	0.99
35033030--35033082	17	3.3	16	75	24	58	49	9	1	39	1.46
35051697--35051727	7	4.4	7	100	0	62	12	0	0	87	0.55
35057233--35057449	118	1.8	118	81	3	267	23	24	25	26	2.00
35062670--35062873	106	1.9	106	100	0	408	31	13	7	47	1.71
35063524--35063553	3	10.0	3	100	0	60	66	0	0	33	0.92
35068208--35068242	18	1.9	18	88	0	52	45	5	2	45	1.41
35073664--35073704	20	2.0	20	86	9	57	39	39	7	14	1.74
35073666--35073729	34	1.9	33	84	9	85	40	35	7	15	1.76
35086101--35086141	18	2.3	18	87	8	57	43	14	4	36	1.67
35088630--35088685	24	2.3	24	87	0	76	25	25	32	17	1.97
35096138--35096185	23	2.1	23	100	0	96	37	4	0	58	1.18
35099946--35099983	20	1.9	20	88	0	58	44	2	13	39	1.57
35103918--35103971	27	2.0	27	82	7	65	37	1	1	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35104799--35104835	16	2.4	16	90	4	58	32	2	5	59	1.34
35104922--35104978	27	2.1	27	90	0	87	26	33	22	17	1.96
35113651--35113761	41	2.8	41	81	9	149	34	22	18	25	1.96
35114635--35114688	4	13.0	4	80	7	63	0	22	3	74	0.98
35114635--35114688	21	2.6	20	82	5	63	0	22	3	74	0.98
35114635--35114695	25	2.4	25	88	0	86	0	26	3	70	1.02
35114632--35114673	17	2.5	17	80	3	59	0	26	0	73	0.83
35114757--35114813	29	1.9	31	89	10	93	43	3	1	50	1.29
35115343--35115429	45	1.9	45	95	4	158	47	9	18	25	1.78
35124324--35124498	27	5.4	32	70	24	111	16	21	30	31	1.95
35124311--35124509	102	1.9	103	92	1	337	19	21	30	29	1.97
35126321--35126351	15	2.1	15	100	0	62	35	19	12	32	1.90
35132396--35132432	16	2.4	16	86	13	51	29	13	8	48	1.71
35133985--35134127	50	2.9	50	83	5	173	30	28	17	23	1.97
35140170--35140259	33	2.6	32	77	15	90	21	6	4	67	1.31
35155341--35155366	9	2.9	9	100	0	52	34	11	7	46	1.69
35159738--35159792	21	2.5	22	82	2	67	69	0	23	7	1.14
35182860--35183155	27	11.0	27	81	8	320	42	18	16	22	1.88
35182857--35183150	107	2.7	108	82	10	352	43	18	15	22	1.88
35182860--35183150	80	3.6	79	86	4	354	43	18	16	22	1.88
35183301--35183367	7	9.0	8	79	12	54	20	1	35	41	1.62
35183300--35183358	7	8.0	7	78	10	64	18	0	37	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35183300--35183358	15	3.9	15	84	4	75	18	0	37	44	1.50
35183308--35183367	23	2.7	23	82	5	79	20	1	35	43	1.62
35185381--35185428	25	1.9	25	87	8	71	20	16	14	47	1.82
35185699--35185744	23	2.0	23	95	0	83	21	15	34	28	1.94
35191905--35191948	23	1.9	23	95	0	79	25	15	29	29	1.96
35197976--35198015	11	3.6	12	80	16	50	30	0	5	65	1.14
35197976--35198016	21	1.9	22	90	5	66	29	0	4	65	1.13
35202736--35202786	20	2.5	20	83	3	57	54	17	0	27	1.43
35202922--35202960	19	2.1	19	95	0	69	48	12	10	28	1.74
35205024--35205065	14	2.9	14	85	3	57	78	2	2	16	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131