genome.fa.s9.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  114  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37865838--37866217	192	2.0	191	95	0	679	28	14	16	40	1.88
37873283--37873313	8	3.9	8	91	0	53	41	0	0	58	0.98
37873282--37873316	16	2.2	16	100	0	70	45	0	0	54	0.99
37874213--37874296	41	2.0	41	84	4	107	35	2	25	36	1.69
37878902--37878931	2	15.0	2	100	0	60	50	0	0	50	1.00
37882755--37882799	22	2.0	22	82	0	54	55	2	2	40	1.24
37882744--37882814	30	2.4	29	82	15	85	56	1	1	40	1.17
37891042--37891085	20	2.2	20	88	8	63	40	4	0	54	1.21
37891072--37891134	22	2.9	22	83	4	65	41	3	1	53	1.26
37892661--37892695	17	2.1	17	94	0	61	25	28	14	31	1.95
37903273--37903320	19	2.5	20	83	6	55	41	8	2	47	1.45
37903279--37903328	19	2.5	19	80	6	55	42	6	2	50	1.38
37912450--37912484	12	2.9	12	91	0	52	20	0	14	65	1.26
37914106--37914143	20	2.0	20	89	5	60	5	18	31	44	1.72
37916078--37916144	34	2.0	34	90	0	107	38	17	8	34	1.82
37917745--37917785	21	2.0	21	90	4	66	26	0	4	68	1.10
37921027--37921136	42	2.6	43	83	9	136	32	21	18	27	1.96
37925805--37925881	22	3.8	20	75	20	79	59	0	1	38	1.06
37926412--37926558	72	2.0	72	97	0	276	43	19	17	20	1.88
37931739--37931796	20	2.8	21	79	10	75	36	3	10	50	1.54
37939586--37939620	18	2.0	17	88	5	52	45	0	0	54	0.99
37939853--37939885	16	2.1	16	100	0	66	21	36	6	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37961693--37961738	15	2.9	15	83	9	56	69	2	4	23	1.17
37962745--37962821	7	11.6	7	72	19	51	27	2	0	70	1.01
37962745--37962821	19	4.2	18	79	17	88	27	2	0	70	1.01
37962742--37962808	22	3.0	23	70	20	61	25	1	0	73	0.92
37966980--37967024	20	2.2	21	84	4	56	71	0	4	24	1.05
37987319--37987360	22	1.9	23	85	9	61	26	14	0	59	1.35
37987319--37987372	21	2.5	22	80	16	60	29	16	0	53	1.43
37987334--37987388	21	2.7	20	78	13	58	27	14	0	58	1.37
37987374--37987430	16	3.6	16	83	9	64	15	12	0	71	1.13
37987367--37987425	15	3.9	15	76	22	52	22	11	0	66	1.24
37988953--37988990	18	2.1	18	95	0	67	52	13	5	28	1.61
37996377--37996434	15	4.0	15	77	16	52	68	3	1	25	1.14
38003153--38003257	41	2.6	41	83	3	122	27	25	18	28	1.98
38003193--38003275	41	2.0	42	86	6	116	33	21	15	28	1.94
38003983--38004019	2	18.5	2	100	0	74	51	0	0	48	1.00
38010541--38010605	32	2.0	32	84	6	85	40	15	7	36	1.76
38010874--38010958	41	2.1	41	88	0	125	30	22	17	29	1.97
38011680--38011707	2	14.0	2	100	0	56	50	0	0	50	1.00
38014168--38014198	2	15.5	2	100	0	62	51	48	0	0	1.00
38023705--38023739	16	2.2	16	89	0	52	34	20	2	42	1.66
38024455--38024485	2	15.5	2	100	0	62	51	48	0	0	1.00
38037183--38037212	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38042341--38042408	34	2.0	34	100	0	136	29	17	20	32	1.96
38044401--38044449	13	3.8	13	76	10	55	36	0	2	61	1.08
38058891--38058916	2	13.0	2	100	0	52	50	0	0	50	1.00
38060065--38060116	20	2.6	20	79	8	61	44	5	3	46	1.45
38063553--38063722	84	2.0	85	98	1	333	52	9	2	35	1.46
38075752--38075808	30	2.0	29	83	12	75	66	5	10	17	1.40
38082969--38083240	27	10.1	27	81	1	296	42	18	15	23	1.88
38090217--38090242	12	2.2	12	100	0	52	7	7	30	53	1.57
38098483--38098522	15	2.8	14	88	7	62	75	2	0	22	0.93
38103710--38103735	7	3.7	7	100	0	52	23	0	0	76	0.78
38103906--38103936	9	3.4	9	90	0	53	25	12	22	38	1.90
38105205--38105231	2	13.5	2	100	0	54	51	0	0	48	1.00
38109009--38109038	13	2.2	13	94	5	51	16	0	6	76	0.99
38109086--38109117	15	2.1	15	94	0	55	9	25	3	62	1.40
38110914--38110959	20	2.2	22	80	11	60	41	8	6	43	1.61
38117868--38118063	94	2.1	94	86	4	272	33	19	11	36	1.87
38118164--38118293	10	13.6	10	66	18	71	67	1	2	28	1.12
38118165--38118291	19	6.7	19	72	15	84	66	1	2	29	1.13
38118165--38118292	9	13.6	9	69	15	71	67	1	2	28	1.12
38118525--38118595	29	2.4	29	81	4	81	33	7	2	56	1.41
38118548--38118603	29	2.0	29	85	3	78	37	5	3	53	1.41
38118554--38118625	19	3.7	19	77	3	72	26	5	6	61	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38118621--38118692	29	2.5	28	79	4	81	36	2	1	59	1.20
38118637--38118696	28	2.1	29	87	3	86	38	1	1	58	1.18
38118780--38119026	89	2.7	90	85	5	331	30	10	19	40	1.85
38119524--38119676	75	2.0	76	98	1	299	52	3	7	35	1.49
38121503--38121533	6	5.2	6	100	0	62	16	0	0	83	0.64
38126729--38126778	23	2.2	21	80	13	55	20	30	8	42	1.80
38126889--38127060	30	5.7	30	80	7	172	31	22	4	41	1.73
38126896--38127038	60	2.4	61	84	5	193	34	23	2	39	1.66
38127391--38127486	3	30.0	3	80	14	86	71	0	28	0	0.86
38127392--38127486	7	13.7	7	85	12	110	72	0	27	0	0.85
38127392--38127486	32	2.9	32	78	10	113	72	0	27	0	0.85
38127395--38127486	17	5.7	15	77	15	78	72	0	27	0	0.84
38127512--38127555	5	9.0	5	85	5	54	22	56	20	0	1.42
38127776--38127846	10	7.0	10	83	3	79	80	0	19	0	0.72
38127773--38127845	13	6.0	11	74	22	58	80	0	19	0	0.71
38127776--38127846	20	3.5	20	81	9	90	80	0	19	0	0.72
38128162--38128204	21	2.2	21	88	12	65	55	9	2	32	1.44
38128386--38129050	17	37.3	18	72	12	437	30	11	11	46	1.76
38128402--38129042	35	18.1	35	73	9	363	30	11	11	47	1.75
38128856--38129042	18	10.3	17	68	13	79	30	13	11	44	1.78
38128648--38128989	18	19.2	18	68	14	120	31	12	10	44	1.77
38130085--38130251	83	2.0	83	100	0	334	27	22	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38132955--38132984	15	1.9	16	93	6	53	33	33	13	20	1.91
38138111--38138627	78	6.6	77	91	2	743	27	17	20	35	1.95
38138125--38138569	235	1.9	234	92	2	750	27	17	21	33	1.96
38138819--38138967	30	5.0	30	83	8	182	31	24	4	39	1.74
38138826--38138967	59	2.4	59	86	2	185	32	25	3	38	1.73
38138819--38138989	89	1.9	89	84	4	229	30	25	4	39	1.76
38138819--38138987	30	5.7	30	83	4	155	30	24	4	39	1.76
38139481--38139541	22	2.6	23	84	10	79	81	4	6	6	0.96
38139480--38139540	30	2.2	30	85	11	85	83	4	6	4	0.90
38139648--38139718	10	6.9	10	77	6	61	78	0	21	0	0.74
38139645--38139715	11	7.1	10	76	16	67	77	0	22	0	0.77
38139645--38139720	20	3.6	21	71	7	73	77	0	22	0	0.77
38139655--38139714	32	1.9	31	86	10	86	75	0	25	0	0.81
38140032--38140076	20	2.3	20	88	7	67	46	13	2	37	1.55
38140073--38140120	21	2.2	21	88	3	69	43	8	6	41	1.60
38140272--38141009	18	41.6	18	75	11	571	30	12	11	45	1.77
38140274--38141035	53	14.4	52	73	14	483	30	12	11	45	1.77
38140272--38141001	35	20.6	34	75	11	544	29	12	11	46	1.77
38140474--38140507	16	2.2	16	89	5	52	29	2	5	61	1.34
38144419--38144465	23	2.1	22	84	7	60	53	19	0	27	1.45
38154160--38154185	12	2.2	12	100	0	52	34	7	15	42	1.75
38154177--38154223	23	2.0	24	87	4	69	38	6	17	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38154536--38154577	3	14.0	3	89	0	66	33	4	0	61	1.17
38155836--38155878	18	2.3	18	84	11	52	67	0	4	27	1.10
38157448--38157707	132	2.0	132	92	0	439	28	24	18	29	1.98
38157713--38158035	44	7.3	43	82	3	322	29	24	15	31	1.95
38157714--38158080	134	2.8	133	83	0	412	29	23	15	31	1.95
38158049--38158435	132	2.9	132	92	0	648	28	24	18	28	1.98
38159728--38159760	14	2.5	13	95	5	57	15	18	0	66	1.25
38159721--38159758	7	5.4	7	84	12	51	10	15	0	73	1.09
38168483--38168518	3	12.3	3	88	5	56	66	0	2	30	1.06
38168480--38168517	17	2.2	17	95	0	67	65	0	2	31	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131