genome.fa.s9.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  94  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31464066--31464231	71	2.2	77	91	8	272	46	20	0	32	1.51
31464219--31464259	19	2.0	20	90	9	66	48	19	0	31	1.49
31464185--31464266	28	2.9	29	84	8	91	46	21	0	31	1.52
31469790--31469840	21	2.4	21	86	0	66	39	13	43	3	1.63
31469805--31469878	21	3.5	21	86	0	94	33	14	43	8	1.75
31470328--31470582	42	5.9	41	81	10	251	25	20	20	33	1.97
31470369--31470586	42	5.0	42	85	9	296	25	20	19	34	1.96
31470369--31470586	90	2.5	84	87	7	303	25	20	19	34	1.96
31472184--31472499	29	11.0	28	81	5	199	27	15	21	35	1.93
31472217--31472541	29	11.3	29	83	3	370	27	15	21	35	1.94
31472217--31472564	144	2.4	143	84	5	441	27	16	21	34	1.94
31472217--31472541	86	3.8	87	78	6	338	27	15	21	35	1.94
31472509--31472840	163	2.0	164	86	0	468	30	18	23	27	1.98
31478817--31478926	20	5.3	20	73	6	78	39	43	6	10	1.65
31478817--31478934	27	4.3	27	69	5	85	38	44	5	11	1.64
31482076--31482113	7	5.4	7	87	0	58	31	0	28	39	1.57
31482826--31482871	19	2.3	20	85	7	58	45	0	0	54	0.99
31486833--31486870	10	3.9	10	80	19	53	73	7	0	18	1.06
31487548--31487594	21	2.2	22	88	3	69	70	0	2	27	0.99
31487752--31487784	15	2.2	15	94	0	57	39	0	3	57	1.14
31487765--31487815	23	2.2	23	82	6	59	27	1	1	68	1.11
31488381--31488410	3	10.0	3	100	0	60	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31489852--31489915	30	2.2	30	83	5	78	59	1	1	37	1.16
31495469--31495514	15	2.9	15	90	6	65	65	2	8	23	1.32
31499354--31499396	22	2.0	22	86	9	61	20	4	2	72	1.14
31499387--31499467	7	11.7	7	96	1	137	13	12	0	74	1.08
31501895--31501999	44	2.4	44	87	9	160	17	20	18	43	1.88
31502471--31502503	17	1.9	17	100	0	66	27	18	0	54	1.44
31503557--31503581	12	2.1	12	100	0	50	24	0	32	44	1.54
31508779--31508811	6	5.3	6	92	7	57	0	15	0	84	0.61
31518327--31518369	18	2.3	19	84	8	52	39	4	2	53	1.34
31518374--31518462	19	4.8	18	68	17	58	29	4	1	65	1.20
31518395--31518470	36	2.1	36	81	16	86	30	3	1	64	1.20
31518433--31518486	11	5.1	11	77	8	58	37	1	0	61	1.07
31518431--31518499	10	7.0	10	71	14	54	34	1	1	62	1.13
31518448--31518486	20	2.0	20	89	0	60	38	0	0	61	0.96
31519090--31519193	55	1.9	54	88	2	154	53	3	0	41	1.25
31523742--31524156	24	17.2	24	72	12	291	30	13	16	39	1.87
31523747--31524110	47	7.6	47	74	11	319	30	13	16	40	1.86
31523742--31524156	141	2.9	141	91	4	634	30	13	16	39	1.87
31529513--31529576	24	2.7	23	80	4	83	26	9	18	45	1.80
31536841--31536959	23	5.1	23	85	2	148	29	12	17	40	1.87
31536847--31537419	47	11.9	47	77	8	485	28	13	18	40	1.88
31536928--31536991	32	2.0	32	87	0	92	31	21	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31536973--31537419	24	18.8	24	76	7	403	28	12	18	40	1.87
31536960--31537373	145	2.9	141	88	3	573	28	12	18	40	1.87
31536969--31537397	117	3.6	118	78	6	411	28	12	18	41	1.86
31539271--31539303	5	6.6	5	89	10	50	18	0	0	81	0.68
31539277--31539303	14	1.9	14	100	0	54	18	0	0	81	0.69
31540295--31540342	9	5.3	9	87	0	51	39	4	0	56	1.19
31540303--31540342	15	2.7	15	92	0	62	40	2	0	57	1.12
31552004--31552028	12	2.1	12	100	0	50	24	32	8	36	1.84
31552844--31553022	46	3.9	46	90	2	272	26	18	25	29	1.98
31552819--31553083	92	2.8	96	81	9	317	26	17	25	29	1.98
31553118--31553463	50	7.0	50	75	11	250	36	20	16	26	1.93
31553275--31553354	42	1.9	42	89	0	124	31	26	15	27	1.95
31553175--31553442	142	1.9	143	81	3	326	36	20	16	26	1.93
31553717--31553743	11	2.5	11	100	0	54	92	7	0	0	0.38
31555027--31555112	3	29.0	3	72	6	68	30	8	1	60	1.33
31556724--31556768	3	15.0	3	90	0	72	31	2	2	64	1.18
31564207--31564260	20	2.7	21	80	13	69	24	20	12	42	1.87
31564207--31564270	20	3.1	21	75	18	64	21	18	15	43	1.87
31564264--31564355	42	2.2	42	88	0	130	18	25	16	40	1.91
31564273--31564340	21	3.2	21	68	0	64	20	25	13	41	1.88
31564265--31564370	42	2.5	42	84	0	113	18	23	16	40	1.91
31566208--31566246	20	2.0	20	85	10	53	56	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31567494--31567528	6	5.8	6	100	0	70	17	0	17	65	1.27
31568245--31568277	14	2.2	16	89	10	52	21	6	0	72	1.05
31583614--31583640	12	2.2	12	100	0	54	55	0	33	11	1.35
31588003--31588076	30	2.6	27	79	12	69	60	0	1	37	1.05
31588554--31588617	27	2.4	26	86	2	83	39	1	6	53	1.36
31588695--31588769	36	2.0	38	92	5	127	49	6	16	28	1.70
31590610--31590654	17	2.8	17	83	12	51	35	6	6	51	1.55
31595181--31595272	29	3.2	29	76	3	87	41	17	19	21	1.90
31600134--31600190	23	2.5	23	85	0	69	15	14	15	54	1.72
31602571--31602615	21	2.1	22	87	4	65	26	0	4	68	1.08
31606812--31606851	19	2.2	18	86	4	53	12	15	5	67	1.38
31606835--31606968	46	2.9	46	95	1	243	22	20	4	52	1.64
31607854--31607923	14	4.8	16	82	10	71	70	0	18	11	1.17
31607871--31607923	7	7.6	7	85	8	72	73	0	16	9	1.08
31609597--31609787	44	4.3	44	84	2	258	31	15	23	29	1.95
31620586--31620623	19	2.0	20	94	5	69	52	5	5	36	1.47
31620585--31620638	22	2.6	21	80	19	69	53	3	3	38	1.36
31629013--31629037	3	8.3	3	100	0	50	36	0	0	64	0.94
31632000--31632024	13	1.9	13	100	0	50	24	48	12	16	1.79
31637345--31637386	21	2.0	21	85	4	57	54	0	0	45	0.99
31637401--31637476	29	2.6	28	82	13	84	59	0	0	40	0.98
31637711--31637777	24	2.8	24	77	18	77	74	4	4	16	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31637711--31637783	25	2.9	24	78	8	67	75	4	5	15	1.14
31644395--31644717	83	4.0	83	79	11	301	43	11	12	33	1.77
31644572--31644742	86	2.0	87	87	5	249	41	11	9	36	1.75
31644572--31644789	86	2.5	86	80	8	221	40	12	12	34	1.81
31644806--31644972	89	1.9	86	84	6	219	42	11	13	31	1.81
31661652--31661739	43	2.0	43	84	0	113	28	23	17	30	1.97
31661676--31661763	43	2.1	41	82	4	104	30	26	14	28	1.95
31668167--31668265	42	2.4	42	87	3	146	38	12	28	21	1.89
31671112--31671136	13	1.9	13	100	0	50	24	16	12	48	1.79
31676283--31676341	24	2.4	25	81	10	61	38	3	0	57	1.15
31679610--31679664	24	2.2	25	83	3	67	27	5	60	7	1.46
31683893--31684021	39	3.2	41	78	6	120	18	28	27	25	1.98
31693378--31695367	987	2.0	985	86	3	2736	36	15	16	30	1.91
31695750--31695789	19	2.3	18	87	12	57	62	5	2	30	1.29
31696414--31696445	16	1.9	17	93	6	57	71	9	18	0	1.12
31702396--31702425	15	1.9	16	93	6	53	30	20	26	23	1.98
31706633--31706676	3	14.3	3	95	4	79	65	2	0	31	1.05
31718336--31718423	45	2.0	45	95	0	158	30	15	14	38	1.88
31722498--31722558	22	2.8	22	80	5	70	34	19	24	21	1.96
31728069--31728188	39	3.1	39	79	11	165	28	15	8	48	1.73
31728051--31728169	38	3.1	38	79	11	161	27	12	11	47	1.76
31729923--31730177	82	3.2	81	85	6	349	27	10	12	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31729923--31730221	82	3.8	80	82	8	344	27	11	12	48	1.75
31729923--31730221	158	1.9	159	85	2	413	27	11	12	48	1.75
31733605--31733677	25	2.9	25	81	0	83	26	24	21	27	2.00
31733834--31733892	31	1.9	30	83	10	75	38	6	16	37	1.76
31738003--31738120	24	4.8	25	71	9	82	31	21	26	21	1.98
31738311--31738374	25	2.6	25	92	0	110	42	18	25	14	1.88
31743704--31743739	18	2.0	18	88	0	54	55	27	0	16	1.42
31744191--31744255	28	2.2	30	89	8	98	55	3	0	41	1.15
31745662--31745856	75	2.6	75	90	2	302	31	26	20	22	1.98
31748978--31749017	19	2.1	19	100	0	80	32	10	15	42	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131