genome.fa.s9.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  36  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11748665--11748707	18	2.4	18	92	0	68	20	27	9	41	1.83
11758084--11758108	10	2.5	10	100	0	50	84	0	8	8	0.79
11760639--11760681	20	2.2	20	91	0	68	60	9	4	25	1.47
11766122--11766160	20	2.0	20	85	5	53	12	28	0	58	1.34
11766761--11766798	18	2.2	18	85	4	51	47	0	2	50	1.15
11766768--11766808	18	2.3	18	87	8	57	41	0	2	56	1.13
11768585--11768757	45	3.9	45	90	2	260	35	17	21	25	1.95
11768585--11768794	90	2.3	90	82	4	228	35	17	22	24	1.95
11771795--11771827	15	2.2	15	94	0	57	51	0	12	36	1.39
11777712--11777740	15	1.9	15	100	0	58	27	27	3	41	1.72
11778879--11778907	13	2.3	13	94	5	51	58	3	0	37	1.15
11786666--11786694	14	2.1	14	100	0	58	13	20	20	44	1.85
11788616--11788673	23	2.6	23	75	8	57	75	6	15	1	1.09
11789264--11789291	12	2.3	12	100	0	56	39	0	7	53	1.28
11791838--11791919	40	2.0	40	95	0	146	20	30	8	40	1.82
11804836--11804877	21	2.0	21	90	0	66	23	38	7	30	1.82
11816053--11816110	6	9.2	6	80	14	55	75	3	0	20	0.94
11817467--11817503	11	3.3	11	85	7	56	64	8	8	18	1.45
11817467--11817500	12	2.9	12	91	4	52	64	8	5	20	1.43
11817714--11817743	7	4.1	7	91	8	51	86	0	0	13	0.57
11822902--11822971	21	3.3	21	79	0	77	42	15	21	20	1.88
11824375--11824405	16	1.9	16	93	0	53	67	6	0	25	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11832693--11832986	43	6.9	43	90	1	414	24	30	18	25	1.98
11834352--11834430	16	5.4	16	69	25	66	30	3	20	45	1.68
11834347--11834407	25	2.4	25	94	0	104	31	6	21	40	1.78
11834347--11834745	9	46.0	9	67	19	208	32	2	20	44	1.64
11834367--11834448	25	3.3	26	80	14	75	28	3	20	47	1.67
11834377--11834439	16	3.9	16	81	8	74	28	3	19	49	1.63
11834408--11834652	25	9.6	26	73	15	106	33	0	20	45	1.57
11834498--11834652	16	9.1	17	73	16	108	34	0	19	45	1.50
11834521--11834703	71	2.8	61	75	20	174	34	1	18	45	1.57
11834545--11834715	37	4.7	37	75	13	115	34	1	19	45	1.58
11834688--11834714	12	2.2	12	100	0	54	33	0	14	51	1.43
11834690--11834807	21	5.6	22	70	14	88	36	1	13	48	1.53
11834583--11834763	62	3.0	58	80	12	199	33	2	19	45	1.63
11837245--11837449	7	28.7	7	70	15	64	38	38	0	22	1.61
11837358--11837478	7	16.9	7	72	10	57	30	40	1	27	1.66
11837521--11837559	21	1.9	20	89	5	60	38	41	2	17	1.64
11838042--11838572	231	2.3	229	87	3	755	31	21	18	28	1.97
11838042--11838713	231	2.9	224	81	6	697	30	21	18	29	1.97
11851732--11851778	19	2.5	19	100	0	94	19	10	48	21	1.78
11852204--11852837	85	7.4	84	74	9	476	24	20	24	30	1.98
11852210--11852838	129	4.9	128	95	1	1071	24	19	24	31	1.98
11852852--11852947	50	1.9	50	93	0	165	27	14	23	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11852872--11852997	50	2.5	50	82	0	135	23	19	23	33	1.97
11853039--11853686	45	14.4	45	84	6	814	30	22	17	29	1.96
11853805--11854059	50	5.1	49	68	5	172	27	19	20	32	1.96
11853730--11854070	100	3.4	100	84	2	436	27	22	19	30	1.98
11854366--11854420	24	2.3	25	81	15	71	27	20	14	38	1.91
11855311--11855360	12	4.0	12	84	5	55	4	14	4	78	1.05
11855792--11855869	1	78.0	1	76	0	75	1	0	10	88	0.57
11855793--11855868	13	5.9	13	83	7	93	1	0	10	88	0.58
11857025--11857151	61	2.1	61	98	1	247	25	24	7	41	1.82
11860555--11860598	19	2.2	20	88	11	65	79	0	13	6	0.92
11862678--11862809	49	2.7	50	81	10	139	54	4	4	36	1.41
11862900--11862933	16	2.1	17	88	5	52	55	2	5	35	1.39
11873130--11873202	36	1.9	39	83	10	98	41	1	1	56	1.16
11873750--11873784	17	2.1	17	88	0	52	34	5	20	40	1.76
11880324--11880404	25	3.2	25	76	13	78	23	24	20	30	1.99
11880324--11880415	25	3.7	25	73	13	66	25	22	22	29	1.99
11881015--11881122	30	3.6	29	86	5	135	32	23	23	21	1.98
11881010--11881122	60	1.9	60	86	0	163	30	23	23	22	1.99
11881458--11881812	27	13.2	27	90	1	509	17	17	20	44	1.87
11887940--11887973	15	2.2	16	89	5	52	11	5	2	79	1.02
11889013--11889052	16	2.4	17	87	8	55	27	0	2	70	1.01
11891091--11891122	16	2.0	16	100	0	64	31	18	6	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11895329--11895366	15	2.7	15	84	8	53	31	0	2	65	1.06
11895324--11895362	20	2.0	20	85	10	53	30	0	2	66	1.05
11903326--11903372	25	1.9	24	83	12	60	42	4	19	34	1.70
11906922--11906973	24	2.2	24	96	0	95	25	7	36	30	1.84
11907417--11907469	25	2.2	24	87	12	74	22	5	5	66	1.35
11907436--11907478	23	2.0	22	86	9	61	27	6	4	60	1.43
11910962--11911014	25	2.0	27	92	7	92	64	3	0	32	1.12
11911499--11911554	29	2.0	29	82	3	69	23	17	14	44	1.85
11913420--11913495	38	2.0	38	100	0	152	44	10	26	18	1.82
11913937--11914010	33	2.2	34	78	11	80	36	14	21	27	1.93
11913915--11914163	101	2.5	100	86	2	347	32	17	24	25	1.96
11913954--11914129	33	5.3	33	71	9	106	31	17	23	27	1.97
11915341--11915387	19	2.5	19	100	0	94	21	29	29	19	1.97
11915661--11915716	3	18.7	3	100	0	112	67	0	32	0	0.91
11917747--11917793	7	6.7	7	100	0	94	14	0	40	44	1.46
11918582--11918621	17	2.4	16	87	4	53	50	7	22	20	1.73
11918591--11918622	16	1.9	17	93	6	57	50	6	21	21	1.71
11919187--11919243	25	2.3	26	87	9	91	42	0	0	57	0.98
11919192--11919287	34	2.8	34	75	9	97	42	1	3	53	1.23
11919988--11920024	19	1.9	19	94	0	65	64	0	0	35	0.94
11920835--11920864	13	2.3	13	100	0	60	26	6	10	56	1.57
11921793--11921900	42	2.6	42	89	0	162	25	27	29	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11923483--11923542	30	2.0	31	83	3	77	38	0	41	20	1.52
11923751--11923787	9	4.1	9	92	0	65	29	10	13	45	1.77
11949976--11950011	18	2.0	18	94	0	63	25	5	33	36	1.79
11951740--11951822	25	3.3	25	91	0	121	25	30	15	28	1.96
11966656--11966700	22	2.0	23	83	12	58	42	2	11	44	1.52
11967000--11967617	3	206.0	3	100	0	1236	66	0	0	33	0.92
11968691--11968732	15	2.9	15	86	6	61	19	0	11	69	1.19
11969179--11969807	51	12.5	51	82	3	662	29	23	15	31	1.96
11969179--11969807	153	4.2	153	82	3	752	29	23	15	31	1.96
11972351--11972587	50	4.7	50	83	2	287	21	29	22	27	1.99
11975669--11975716	6	8.2	6	79	4	53	0	29	0	70	0.87
11975667--11975708	18	2.4	18	92	4	68	0	26	0	73	0.83
11980261--11980432	92	1.9	92	97	0	326	32	21	11	34	1.89
11980262--11980456	92	2.1	92	91	1	302	31	21	11	36	1.88
11984383--11984456	37	2.0	37	100	0	148	40	13	13	32	1.84
11998460--11998495	6	6.0	6	93	0	63	2	0	30	66	1.06
12001051--12001088	10	3.6	10	86	13	58	60	2	0	36	1.11
12004033--12004059	14	1.9	14	100	0	54	22	7	48	22	1.75
12005167--12005201	15	2.2	16	90	5	54	40	0	22	37	1.55
12006910--12007191	145	1.9	145	100	0	564	20	25	31	21	1.98
12010591--12010783	28	7.0	27	80	9	106	27	27	11	32	1.92
12010619--12010816	28	7.1	28	85	0	254	25	26	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12016856--12016882	14	1.9	14	100	0	54	37	22	25	14	1.93
12019201--12019285	13	6.5	13	75	2	53	31	24	2	41	1.68
12019216--12019285	27	2.7	26	80	4	77	31	24	1	42	1.63
12024756--12024851	25	3.8	25	79	10	106	29	25	16	29	1.97
12025991--12026020	16	1.9	16	93	6	53	30	0	20	50	1.49
12037580--12037674	26	3.5	26	81	4	109	27	15	27	29	1.96
12039014--12039075	20	3.1	20	73	0	70	35	22	22	19	1.96
12038993--12039075	40	2.1	40	83	0	103	36	24	21	18	1.95
12039170--12039253	38	2.2	38	83	6	100	42	15	20	21	1.88
12042389--12042451	20	3.2	20	86	0	90	38	25	20	15	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131