genome.fa.s9.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  37  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12042379--12042464	40	2.2	40	85	4	111	41	22	18	17	1.90
12043466--12043540	35	2.1	35	100	0	150	54	6	18	20	1.65
12046066--12046183	55	2.1	56	92	1	193	24	23	18	33	1.97
12047229--12047271	21	2.0	23	86	9	63	32	13	4	48	1.63
12050682--12050721	18	2.2	18	86	0	53	32	10	32	25	1.89
12050875--12050911	18	2.1	18	89	0	56	21	10	32	35	1.88
12050668--12051038	198	1.9	198	92	0	625	29	14	29	26	1.95
12051148--12051222	33	2.3	33	88	0	105	30	20	24	25	1.98
12051462--12051503	18	2.3	18	87	0	57	33	14	35	16	1.89
12051181--12051649	198	2.4	198	88	2	683	30	15	28	25	1.96
12052199--12054902	880	3.0	884	92	2	4331	40	15	18	25	1.90
12058135--12058170	18	2.0	18	88	0	54	36	11	25	27	1.90
12058935--12058984	18	2.8	18	87	0	64	40	10	26	24	1.86
12059052--12059824	210	3.8	210	82	6	885	38	15	23	22	1.93
12059429--12060043	192	3.2	191	81	3	750	37	14	24	23	1.92
12060261--12060323	18	3.5	18	80	8	74	41	9	26	22	1.84
12060685--12061060	165	2.3	165	91	0	592	37	17	21	23	1.94
12060689--12061112	165	2.6	165	87	3	514	38	16	20	23	1.93
12061089--12061130	18	2.3	18	87	0	66	42	11	28	16	1.84
12064151--12064192	22	1.9	22	85	9	59	11	2	19	66	1.34
12064814--12064930	41	2.9	41	86	6	141	25	15	27	31	1.96
12064834--12064931	41	2.4	41	87	3	144	26	15	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12065954--12066002	20	2.5	20	76	3	64	36	10	14	38	1.80
12067390--12067449	11	5.5	11	71	28	56	65	0	0	35	0.93
12067390--12067477	9	9.6	9	74	16	65	61	1	1	36	1.11
12067411--12067476	19	3.3	20	72	8	64	59	1	1	37	1.16
12067411--12067476	30	2.3	30	82	12	84	59	1	1	37	1.16
12067992--12068066	10	7.7	9	73	15	51	60	4	5	30	1.38
12067994--12068066	20	3.7	20	80	5	85	60	4	5	30	1.38
12068636--12068677	19	2.2	20	91	4	68	38	0	4	57	1.20
12068779--12068917	68	2.0	68	98	0	269	43	2	5	48	1.42
12069217--12069286	27	2.6	28	84	11	92	30	14	12	42	1.83
12078042--12078087	23	2.0	22	91	4	74	65	0	4	30	1.12
12078827--12078865	15	2.5	15	87	4	51	58	0	5	35	1.20
12085509--12085701	42	4.6	42	80	2	208	32	22	19	25	1.98
12088243--12088374	39	3.4	39	81	8	151	44	21	6	28	1.75
12109627--12109669	19	2.2	19	91	4	68	48	6	16	27	1.71
12111512--12111536	9	2.8	9	100	0	50	0	28	36	36	1.58
12137154--12137194	21	1.9	22	85	5	57	75	2	4	17	1.08
12137433--12137562	43	3.0	43	100	0	260	39	20	4	35	1.74
12143388--12143436	16	3.3	16	69	30	54	53	8	8	30	1.60
12143389--12143445	28	2.0	28	96	0	105	50	8	7	33	1.60
12143389--12143459	28	2.5	28	88	4	90	47	11	7	33	1.66
12147203--12147272	36	2.0	36	88	2	106	17	12	37	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12147216--12147293	36	2.2	36	85	0	102	15	10	37	37	1.81
12151883--12151958	26	3.0	26	84	1	91	31	13	9	46	1.74
12152066--12152119	6	9.0	6	95	0	90	16	20	0	62	1.32
12153519--12153718	51	3.9	51	82	5	226	32	26	14	27	1.95
12153523--12153716	102	1.9	102	85	4	266	32	26	14	26	1.95
12154314--12154404	45	2.0	45	100	0	182	42	19	6	30	1.77
12164549--12164705	41	3.8	41	84	0	206	21	19	26	33	1.97
12165478--12165906	69	6.2	69	93	0	723	26	8	19	45	1.79
12165478--12165906	208	2.1	207	92	0	714	26	8	19	45	1.79
12169549--12169613	22	2.8	23	73	15	71	47	0	0	52	1.00
12172529--12172593	14	4.3	15	73	19	55	53	3	4	38	1.37
12172541--12172590	16	3.2	16	78	16	59	60	2	4	34	1.27
12173628--12173668	21	2.0	21	85	9	57	43	0	34	21	1.53
12174298--12174336	12	3.2	12	85	7	51	41	0	2	56	1.13
12174908--12174946	18	2.1	19	90	4	62	30	7	5	56	1.49
12182216--12182247	13	2.5	13	95	5	57	21	6	0	71	1.07
12182294--12182320	14	1.9	14	100	0	54	14	11	0	74	1.08
12182288--12182327	12	3.2	12	83	13	53	12	10	0	77	0.99
12186524--12186558	18	1.9	18	88	0	52	77	2	0	20	0.90
12194053--12194140	46	1.9	46	95	0	158	32	18	19	29	1.95
12194389--12194518	50	2.6	50	73	4	120	33	23	18	25	1.97
12194720--12194762	14	3.0	14	83	10	52	81	2	0	16	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12195062--12195098	17	2.2	17	100	0	74	70	8	16	5	1.30
12195647--12196233	293	2.0	292	92	1	978	21	15	12	50	1.77
12196335--12196370	18	2.1	16	90	10	54	33	5	0	61	1.19
12196325--12196387	28	2.2	28	78	10	67	38	6	1	53	1.36
12198072--12198100	14	2.1	14	100	0	58	20	24	20	34	1.97
12199005--12199041	9	4.1	9	86	13	58	32	10	10	45	1.74
12204655--12204963	154	2.0	155	99	0	611	48	3	7	40	1.48
12205877--12206113	90	2.6	93	86	2	309	43	0	14	41	1.51
12205998--12206049	27	2.0	26	84	3	68	42	0	19	38	1.51
12208908--12208991	25	3.4	25	78	6	98	28	22	26	22	1.99
12212717--12212750	17	1.9	17	88	5	50	2	17	0	79	0.86
12212723--12212760	17	2.2	17	86	9	51	0	21	2	76	0.91
12213627--12213669	18	2.4	18	88	0	59	41	44	2	11	1.53
12213711--12213745	6	5.8	6	93	0	61	65	17	2	14	1.38
12213784--12213824	9	4.6	9	90	0	64	24	9	24	41	1.85
12213783--12213824	18	2.3	18	100	0	84	23	9	23	42	1.83
12216685--12216746	32	1.9	33	86	3	90	59	4	0	35	1.19
12218938--12219034	40	2.4	41	89	8	155	19	29	17	32	1.95
12218961--12219022	20	3.1	20	68	9	63	12	30	19	37	1.89
12218938--12219046	40	2.7	41	83	12	145	18	29	16	35	1.93
12220277--12220476	57	3.4	58	66	20	162	37	24	11	27	1.89
12220266--12220518	121	2.1	123	98	1	492	36	22	11	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12220760--12221194	95	4.6	95	80	2	268	26	15	18	39	1.91
12220921--12221205	94	3.0	94	84	1	354	28	16	17	37	1.92
12224547--12224577	11	2.8	11	90	0	53	32	0	0	67	0.91
12224650--12224712	30	2.1	30	96	0	117	57	15	3	23	1.53
12226518--12226608	38	2.4	38	86	0	119	18	24	24	32	1.97
12234548--12234597	22	2.3	21	83	12	66	56	2	6	36	1.36
12236785--12236841	27	2.1	27	90	0	87	21	15	35	28	1.94
12236785--12236850	27	2.4	27	85	5	71	22	16	33	27	1.96
12238512--12238614	45	2.3	45	80	6	111	44	14	17	23	1.85
12247824--12247953	49	2.6	49	75	10	138	35	23	16	24	1.95
12254161--12254200	21	1.9	21	94	0	71	47	22	5	25	1.71
12255365--12255451	25	3.5	26	89	6	117	28	20	25	25	1.99
12256352--12256394	23	1.9	23	86	13	63	39	23	0	37	1.55
12261024--12261074	16	3.2	16	88	0	66	25	19	9	45	1.81
12264633--12264668	14	2.5	15	90	4	56	33	0	5	61	1.19
12269144--12269256	51	2.2	51	90	0	172	36	15	20	28	1.92
12278236--12278412	93	1.9	93	85	2	248	37	20	15	26	1.93
12281038--12281078	21	2.0	20	85	4	55	60	7	0	31	1.24
12281050--12281111	28	2.2	28	83	11	74	56	3	3	37	1.32
12289251--12289303	23	2.3	23	96	0	97	30	9	28	32	1.88
12289259--12289310	23	2.3	23	93	0	86	34	9	28	26	1.88
12292226--12292281	24	2.3	25	81	9	71	26	21	7	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12292422--12292509	25	3.6	25	80	4	90	30	21	23	23	1.99
12301167--12301689	260	2.0	260	97	0	983	24	8	23	42	1.82
12303514--12303552	14	2.6	15	92	8	62	48	5	0	46	1.24
12303561--12303648	31	3.0	30	78	13	110	48	2	5	43	1.39
12303578--12303648	27	2.4	29	84	9	92	49	1	5	43	1.35
12303605--12303664	16	3.8	17	74	12	56	45	5	3	46	1.41
12305484--12305574	47	1.9	47	90	0	146	31	14	9	43	1.78
12309253--12309295	20	2.0	21	86	8	61	11	6	2	79	1.02
12309852--12309898	25	2.0	23	91	8	76	29	4	0	65	1.11
12310197--12310248	22	2.4	21	77	3	59	38	11	1	48	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131