genome.fa.s9.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  124  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40829096--40829123	14	2.0	14	100	0	56	35	0	14	50	1.43
40832533--40832576	17	2.6	17	88	0	61	47	13	0	38	1.43
40838728--40838772	16	2.7	18	74	22	53	37	2	0	60	1.09
40843494--40843550	23	2.4	23	83	11	71	38	1	7	52	1.39
40852704--40852761	17	3.4	17	78	4	71	13	25	27	32	1.94
40861096--40861141	23	2.0	22	83	4	56	26	2	2	69	1.11
40861098--40861157	29	2.1	29	87	6	86	26	1	1	70	1.07
40860607--40861759	576	2.0	576	100	0	2306	32	14	16	37	1.89
40861672--40861717	23	2.0	22	83	4	56	26	2	2	69	1.11
40861674--40861733	29	2.1	29	87	6	86	26	1	1	70	1.07
40861688--40861745	14	4.4	14	72	16	52	27	1	1	68	1.08
40869458--40869536	36	2.2	36	86	0	104	29	17	30	22	1.97
40870887--40870982	17	5.6	16	75	10	77	20	17	28	33	1.96
40870940--40870993	18	3.1	18	75	17	51	18	18	27	35	1.94
40870921--40871025	35	3.1	35	80	13	94	17	18	26	38	1.92
40874470--40874551	26	3.2	26	65	16	71	43	6	18	31	1.74
40874460--40874564	51	2.1	51	96	0	192	40	7	20	31	1.80
40882314--40882344	13	2.3	14	88	11	55	9	12	0	77	0.99
40882988--40883017	16	1.9	15	93	6	51	43	0	3	53	1.17
40889344--40889381	17	2.1	19	90	9	62	23	5	2	68	1.23
40889339--40889383	19	2.3	21	75	25	53	20	6	2	71	1.20
40897862--40897896	18	1.9	18	94	0	61	0	14	2	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40898868--40898919	19	2.9	17	81	10	59	40	11	15	32	1.83
40911292--40911491	44	4.6	44	80	7	198	33	27	18	21	1.96
40916354--40916430	41	1.9	40	91	2	127	28	22	15	33	1.94
40934498--40934572	30	2.5	30	86	0	105	25	33	26	14	1.94
40940772--40940836	25	2.6	25	72	18	62	29	4	3	63	1.30
40940794--40940843	3	16.3	3	80	12	57	30	4	2	64	1.23
40940794--40940843	15	3.5	13	86	10	64	30	4	2	64	1.23
40940987--40941035	24	2.2	22	85	10	64	28	2	10	59	1.41
40940978--40941077	49	2.0	51	82	3	123	30	3	10	57	1.47
40941634--40941744	19	5.8	19	85	0	159	40	9	12	36	1.77
40941641--40941744	38	2.7	38	93	0	181	41	9	11	37	1.74
40942035--40942087	25	2.2	25	83	6	65	18	7	3	69	1.28
40948005--40948660	132	5.0	132	92	0	1053	28	18	23	29	1.97
40949298--40949342	19	2.4	19	92	0	72	40	8	11	40	1.72
40949642--40949695	26	2.2	26	83	6	67	18	7	3	70	1.26
40950356--40950411	26	2.2	26	87	6	78	23	21	25	30	1.99
40951729--40951756	14	2.0	14	100	0	56	35	42	7	14	1.73
40957508--40957633	46	2.7	46	87	2	173	40	20	25	13	1.89
40958869--40959080	45	4.7	45	78	3	203	30	18	22	28	1.98
40958917--40959086	89	1.9	90	81	1	207	30	18	22	28	1.97
40959164--40959471	143	2.2	142	87	4	442	29	22	21	25	1.99
40960914--40961064	10	14.0	10	71	17	90	23	3	4	68	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40960916--40960983	3	23.3	3	80	14	56	26	2	1	69	1.12
40960926--40961077	33	4.3	33	68	25	103	24	4	4	66	1.30
40960876--40961089	110	1.9	111	97	2	405	24	5	5	64	1.36
40963127--40963167	10	4.0	10	96	3	73	21	0	0	78	0.76
40963129--40963196	3	23.3	3	80	14	56	26	2	1	69	1.12
40963132--40963196	26	2.6	25	83	9	78	26	3	1	69	1.12
40964344--40964391	21	2.3	20	80	16	53	22	8	2	66	1.29
40964680--40964780	24	4.2	24	79	3	96	32	1	7	57	1.39
40968606--40968703	46	2.2	46	94	1	171	43	19	3	33	1.66
40972252--40972349	46	2.2	46	94	1	171	43	19	3	33	1.66
40974223--40974286	22	2.7	25	86	9	82	39	1	0	59	1.07
40974298--40974323	7	3.7	7	100	0	52	30	0	0	69	0.89
40984448--40984479	11	2.8	12	86	13	50	12	0	0	87	0.54
40985342--40985400	22	2.6	22	86	7	75	35	6	1	55	1.36
40990639--40990729	30	3.0	29	78	12	103	72	9	7	9	1.28
40990638--40990701	18	3.3	20	74	12	53	75	10	6	7	1.20
40992914--40993140	87	2.6	87	82	4	262	25	23	27	22	2.00
40993143--40993989	131	6.4	131	78	9	794	29	20	24	24	1.99
40993047--40993860	400	2.0	401	92	0	1360	29	21	25	24	1.99
40993634--40993840	44	4.7	44	66	14	131	28	23	24	23	1.99
40993631--40994048	132	3.2	132	83	5	431	28	20	24	25	1.99
40994237--40994398	50	3.2	50	75	3	164	36	21	17	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40998647--40998882	43	5.4	43	79	2	211	19	18	22	40	1.91
41033602--41033660	26	2.2	27	82	11	77	8	27	3	61	1.41
41041633--41041899	94	2.8	94	83	2	338	26	21	17	34	1.95
41042474--41043101	213	2.9	213	99	0	1229	41	12	12	32	1.82
41054810--41054861	20	2.7	20	84	3	70	15	32	0	51	1.43
41057690--41057716	13	2.1	13	100	0	54	55	0	7	37	1.28
41058785--41058813	7	4.1	7	100	0	58	0	0	13	86	0.58
41060513--41060549	9	4.1	9	89	0	56	48	13	8	29	1.71
41063440--41063478	20	1.9	20	89	5	60	41	7	2	48	1.45
41063785--41063991	107	1.9	108	90	1	326	31	18	17	31	1.95
41069009--41069046	17	2.3	17	86	4	51	10	10	2	76	1.12
41071395--41071532	58	2.4	58	81	3	145	61	6	1	30	1.30
41071994--41072314	154	2.1	157	92	1	540	30	10	9	50	1.68
41076338--41076368	2	15.5	2	93	0	53	48	0	3	48	1.17
41078647--41078682	2	18.0	2	94	0	63	47	2	0	50	1.15
41081676--41081713	20	1.9	20	94	0	67	31	21	10	36	1.87
41082406--41082446	9	4.3	9	85	11	55	39	2	0	58	1.11
41083052--41083093	21	2.0	21	85	0	57	42	0	2	54	1.13
41087806--41087896	3	30.3	3	93	0	155	67	0	30	2	1.03
41092632--41092659	5	5.6	5	100	0	56	82	0	0	17	0.68
41095534--41095583	24	2.2	23	89	7	75	34	4	6	56	1.43
41099349--41099373	13	1.9	13	100	0	50	56	4	0	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41100268--41100303	18	2.0	18	94	0	63	41	0	5	52	1.24
41104965--41105498	266	2.0	267	99	0	1061	45	11	16	25	1.81
41106019--41106043	11	2.3	11	100	0	50	76	0	8	16	1.02
41105993--41106042	15	3.3	15	80	8	57	78	0	8	14	0.97
41106851--41107176	45	7.3	43	70	13	171	30	22	17	30	1.96
41106851--41106962	44	2.5	45	79	4	120	32	24	16	27	1.96
41106794--41107101	96	3.3	94	71	14	271	30	20	17	30	1.96
41120007--41120082	38	2.0	38	97	0	143	10	25	2	61	1.41
41125340--41125598	91	2.9	91	84	3	326	30	24	16	28	1.97
41130927--41130952	13	2.0	13	100	0	52	38	15	7	38	1.76
41143807--41143864	11	5.5	11	82	17	70	20	1	1	75	0.97
41143807--41143864	21	2.7	23	78	21	72	20	1	1	75	0.97
41143804--41143861	29	2.0	29	87	12	84	18	3	1	75	1.03
41143815--41143864	18	2.6	19	82	17	68	20	2	2	76	0.99
41143843--41143991	71	2.1	72	98	1	291	20	12	4	63	1.43
41143851--41143962	33	3.2	33	70	20	111	21	10	2	65	1.36
41145871--41145913	6	7.3	6	84	5	52	16	0	6	76	0.99
41149227--41149320	42	2.2	42	98	0	179	26	27	27	18	1.98
41160734--41160761	12	2.3	12	100	0	56	46	14	7	32	1.71
41167557--41167792	41	5.8	41	78	3	224	18	17	25	37	1.93
41167557--41167790	82	2.9	82	81	2	281	18	17	26	38	1.93
41167557--41167792	123	1.9	122	80	6	271	18	17	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41175783--41175807	13	1.9	13	100	0	50	72	4	0	24	1.02
41176117--41176148	2	16.0	2	93	0	55	0	46	0	53	1.00
41195421--41195472	19	2.7	20	81	3	61	23	15	19	42	1.89
41212769--41212796	3	9.3	3	100	0	56	35	0	32	32	1.58
41213573--41213603	15	2.1	15	100	0	62	22	32	6	38	1.80
41217909--41217939	15	2.1	15	100	0	62	22	32	6	38	1.80
41218814--41219034	111	2.0	111	91	1	363	34	17	15	32	1.91
41218933--41219664	365	2.0	365	97	0	1394	38	14	15	31	1.87
41221634--41221820	44	4.2	44	87	1	241	23	25	23	27	2.00
41221650--41221820	88	1.9	88	91	0	279	22	26	22	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131