genome.fa.s9.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  85  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28576236--28576275	17	2.4	17	100	0	80	37	35	7	20	1.81
28578240--28578341	31	3.5	30	70	17	88	43	9	28	18	1.82
28578604--28578658	16	3.5	16	76	16	53	67	0	1	30	1.01
28579652--28579983	110	3.0	110	97	0	619	24	30	16	28	1.97
28580288--28580448	40	4.0	40	80	0	160	31	19	22	27	1.98
28580287--28580445	80	2.0	80	83	0	201	30	18	23	27	1.97
28580901--28581044	7	20.3	7	71	8	85	22	1	27	47	1.59
28580901--28580995	21	4.5	21	82	0	118	22	1	28	48	1.57
28580964--28581040	36	2.1	36	88	4	111	27	1	24	46	1.60
28586397--28586436	17	2.4	17	100	0	80	37	35	7	20	1.81
28588401--28588502	31	3.5	30	70	17	88	43	9	28	18	1.82
28588765--28588819	16	3.5	16	76	16	53	67	0	1	30	1.01
28589813--28590034	110	2.0	110	95	0	399	24	30	16	28	1.97
28590339--28590499	40	4.0	40	80	0	160	31	19	22	27	1.98
28590338--28590496	80	2.0	80	83	0	201	30	18	23	27	1.97
28590431--28590707	114	2.4	115	84	0	340	33	18	21	26	1.96
28590545--28590627	40	2.0	40	81	2	94	36	18	20	25	1.95
28590481--28590707	115	2.0	114	87	0	328	34	17	20	26	1.95
28590546--28590987	157	2.8	156	87	2	604	32	17	22	27	1.96
28591018--28591071	14	3.8	14	77	2	54	24	1	24	50	1.60
28591097--28591140	14	3.1	14	83	6	54	18	0	27	54	1.44
28591108--28591149	21	2.0	21	85	0	57	16	0	30	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28591109--28591149	14	2.9	14	81	0	55	14	0	31	53	1.41
28591314--28591545	7	33.1	7	72	3	117	22	0	28	47	1.57
28591319--28591372	20	2.6	21	85	2	74	22	0	31	46	1.52
28592197--28592239	22	1.9	23	90	4	70	41	4	23	30	1.74
28593162--28593202	20	2.1	20	86	4	57	14	14	4	65	1.42
28595292--28595371	41	2.0	41	82	0	97	32	16	21	30	1.95
28595289--28595517	86	2.7	85	80	5	248	29	19	20	30	1.97
28595291--28595620	43	7.7	43	75	3	200	28	16	20	33	1.95
28595359--28595568	86	2.4	86	82	3	235	28	16	21	34	1.95
28598517--28598571	26	2.1	26	100	0	110	12	27	7	52	1.65
28601916--28602000	9	8.6	10	73	15	61	58	1	3	36	1.23
28601993--28602033	19	2.2	19	86	4	57	60	0	7	31	1.24
28602612--28602656	23	1.9	24	81	4	56	48	4	0	46	1.22
28602577--28602739	61	2.8	57	76	14	138	49	3	1	45	1.28
28612722--28612746	5	5.0	5	100	0	50	80	0	20	0	0.72
28615857--28615884	13	2.2	13	100	0	56	14	0	14	71	1.15
28622957--28622989	16	2.1	16	100	0	66	36	6	36	21	1.78
28622971--28623065	44	2.1	45	86	5	131	32	5	29	32	1.80
28623197--28623229	16	2.1	16	94	0	57	39	6	33	21	1.78
28623211--28623305	44	2.1	45	84	5	122	32	6	29	31	1.82
28622934--28623414	240	2.0	240	96	0	883	35	7	23	33	1.83
28623420--28623548	57	2.2	56	76	18	129	51	3	1	42	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28625148--28625177	12	2.5	12	94	0	51	46	10	30	13	1.75
28628417--28628505	23	4.0	23	75	15	80	50	23	6	19	1.71
28630617--28630662	20	2.3	20	85	7	58	71	6	0	21	1.08
28631030--28631102	37	2.0	37	83	0	92	45	6	9	38	1.64
28631435--28631481	22	2.1	22	100	0	94	53	0	0	46	1.00
28631565--28631599	17	2.1	17	100	0	70	34	22	14	28	1.93
28636247--28636295	24	2.0	24	100	0	98	36	12	16	34	1.86
28640034--28640126	45	2.1	45	95	0	168	49	17	15	18	1.80
28640518--28640599	25	3.3	26	70	19	75	26	21	28	23	1.99
28647325--28647446	25	4.9	25	75	3	95	29	22	27	21	1.99
28647335--28647493	25	6.5	24	67	11	90	29	21	27	21	1.98
28648810--28648836	13	2.1	13	100	0	54	0	22	14	62	1.31
28651084--28651120	18	2.0	19	85	15	51	32	16	2	48	1.60
28655963--28656027	21	3.2	21	78	6	71	3	33	16	46	1.63
28660856--28660897	22	1.9	22	85	0	57	23	23	2	50	1.61
28660907--28660935	15	1.9	15	100	0	58	31	0	0	68	0.89
28661896--28662152	125	2.0	126	98	1	498	40	10	10	38	1.76
28665042--28665242	43	4.5	43	72	12	172	32	1	19	46	1.61
28665051--28665168	38	2.9	39	82	6	121	34	1	18	44	1.60
28665151--28665308	54	2.9	54	70	12	151	31	1	20	46	1.58
28665228--28665422	9	20.9	9	73	13	99	32	0	18	48	1.49
28665255--28665400	47	3.1	47	96	1	258	32	0	19	47	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28668790--28668940	7	21.4	7	72	6	90	47	25	1	25	1.62
28668762--28668940	21	8.5	21	71	6	110	45	27	2	24	1.65
28668995--28669206	103	2.1	104	98	1	410	46	11	4	37	1.61
28669320--28669573	116	2.2	116	84	4	336	26	21	19	31	1.97
28669471--28669720	74	3.4	74	86	1	322	28	20	18	32	1.96
28669698--28669782	40	2.1	40	89	4	127	21	22	22	34	1.97
28671392--28671504	54	2.1	54	93	0	190	16	13	33	36	1.88
28676022--28676082	12	4.8	12	70	21	52	44	3	0	52	1.17
28676288--28676341	28	1.9	28	100	0	108	46	0	3	50	1.19
28683826--28683866	13	2.9	14	77	22	50	41	0	0	58	0.98
28683826--28683862	15	2.3	17	86	13	60	37	0	0	62	0.96
28685207--28685248	22	2.0	21	90	4	66	64	4	0	30	1.14
28686078--28686130	27	2.0	27	81	7	63	49	9	15	26	1.74
28686784--28686924	63	2.3	63	87	1	194	26	30	21	20	1.98
28695668--28695696	15	1.9	15	100	0	58	34	6	27	31	1.83
28698697--28698821	45	2.8	44	80	7	144	42	15	21	20	1.89
28706566--28706688	50	2.5	49	78	6	133	30	21	26	21	1.98
28706566--28706695	49	2.6	49	79	6	138	30	20	26	22	1.98
28706898--28706946	20	2.5	20	81	15	66	57	6	24	12	1.58
28711187--28711265	33	2.6	31	82	9	92	29	26	24	20	1.99
28711606--28711739	26	5.2	26	88	1	198	23	19	19	37	1.94
28718074--28718119	23	2.1	23	84	8	60	43	15	4	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28718074--28718177	19	5.1	21	82	6	67	40	14	6	38	1.72
28718074--28718132	22	2.7	22	82	7	66	40	16	5	37	1.71
28718111--28718221	19	5.8	19	86	0	168	36	13	8	41	1.74
28718663--28718843	44	4.1	45	64	14	99	29	23	19	27	1.98
28718549--28719572	132	7.8	132	93	1	1635	29	24	18	28	1.98
28719323--28719495	44	3.9	44	64	13	104	30	24	20	25	1.99
28723549--28723594	24	1.9	24	86	0	65	15	26	15	43	1.85
28725815--28725887	31	2.4	31	97	0	137	39	16	13	30	1.87
28727095--28727175	33	2.6	31	78	17	89	30	22	22	24	1.99
28727337--28727402	27	2.5	27	85	7	82	36	22	21	19	1.95
28727581--28727755	52	3.4	52	81	3	219	29	16	17	37	1.92
28727578--28727755	78	2.3	78	82	5	225	29	16	16	37	1.92
28727581--28727755	26	6.8	25	80	9	190	29	16	17	37	1.92
28733751--28733788	7	5.4	7	100	0	76	28	0	0	71	0.87
28735204--28735380	77	2.3	77	99	0	345	44	9	7	38	1.67
28738325--28738362	19	2.1	19	85	9	53	65	2	0	31	1.06
28738325--28738363	18	2.1	19	85	4	53	66	2	0	30	1.05
28750392--28750453	26	2.4	26	94	0	115	35	16	12	35	1.87
28758200--28758253	26	2.0	28	85	7	76	42	0	3	53	1.18
28760224--28760266	14	3.0	14	83	6	59	58	6	0	34	1.25
28760204--28760266	29	2.1	32	85	8	87	58	6	3	31	1.39
28760838--28760882	19	2.2	21	84	7	58	33	4	4	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28761666--28761708	21	2.0	21	86	0	59	30	0	6	62	1.21
28768919--28769094	88	2.0	88	92	0	289	30	18	23	27	1.98
28772113--28772152	1	40.0	1	100	0	80	100	0	0	0	0.00
28772188--28772219	16	1.9	17	93	6	57	71	0	28	0	0.86
28773905--28773943	19	2.0	20	85	5	53	64	7	0	28	1.21
28773983--28774031	11	4.5	11	80	14	57	59	0	2	38	1.09
28773982--28774031	20	2.3	22	86	10	68	58	0	2	40	1.10
28773981--28774024	12	4.1	11	80	14	56	56	0	2	40	1.11
28784058--28784591	104	5.2	103	78	4	536	28	18	21	30	1.97
28784058--28784599	207	2.6	207	82	2	624	28	19	21	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131