genome.fa.s9.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  21  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7042320--7042344	11	2.3	11	100	0	50	40	8	0	52	1.31
7042304--7042416	40	2.8	40	85	7	158	31	4	0	63	1.14
7042345--7042378	17	2.0	17	94	0	59	32	0	0	67	0.91
7042304--7042421	43	2.8	44	80	17	146	32	4	0	63	1.14
7042393--7042432	21	2.0	21	95	5	73	35	2	0	62	1.09
7042395--7042439	20	2.2	20	84	7	56	35	2	0	62	1.08
7042394--7042439	21	2.2	20	88	3	65	34	2	0	63	1.07
7043294--7043321	13	2.2	13	100	0	56	7	14	25	53	1.66
7048548--7048615	25	2.8	24	80	12	75	38	17	20	23	1.93
7048530--7048620	25	3.6	25	76	5	67	36	20	20	21	1.95
7065528--7065579	22	2.4	21	84	9	68	61	5	3	28	1.37
7080083--7080138	2	28.0	2	100	0	112	50	50	0	0	1.00
7084609--7084664	26	2.2	26	96	0	103	28	25	12	33	1.92
7091366--7091414	2	24.0	2	87	4	71	48	4	2	44	1.33
7092015--7092200	41	4.5	41	89	0	282	27	23	16	32	1.96
7109040--7109086	6	7.5	6	90	9	76	14	17	0	68	1.22
7111728--7111865	9	14.0	9	73	22	57	36	2	0	61	1.08
7111706--7111763	30	2.0	27	87	9	80	34	5	0	60	1.19
7111727--7111865	60	2.3	60	87	3	199	35	2	0	61	1.08
7111805--7111868	10	6.1	10	77	13	58	43	1	0	54	1.09
7111746--7111868	11	11.9	11	74	16	77	37	2	0	60	1.10
7121306--7121351	18	2.3	20	75	10	51	4	32	0	63	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7123315--7123351	8	4.8	8	87	12	51	86	13	0	0	0.57
7128357--7129127	45	17.3	45	79	7	777	29	25	16	27	1.97
7130077--7130127	7	7.6	7	80	10	54	0	11	3	84	0.75
7130077--7130128	14	3.9	13	79	20	63	0	13	3	82	0.80
7130077--7130128	16	3.4	16	82	12	56	0	13	3	82	0.80
7130077--7130127	10	5.1	10	79	9	59	0	11	3	84	0.75
7139803--7139850	8	5.8	8	78	7	51	79	4	0	16	0.89
7142127--7142303	94	1.9	94	91	2	293	46	9	12	30	1.74
7142127--7142361	94	2.4	95	84	8	287	50	8	12	29	1.68
7152029--7152058	11	2.7	11	94	0	51	30	0	10	60	1.30
7155424--7155458	17	2.1	17	94	0	61	17	2	34	45	1.63
7157769--7157796	13	2.2	13	100	0	56	53	0	0	46	1.00
7159622--7159678	19	3.0	19	92	0	87	35	10	17	36	1.84
7162577--7162940	181	2.0	181	95	0	647	27	20	23	28	1.99
7163250--7163280	15	2.1	15	100	0	62	41	12	12	32	1.81
7165829--7165858	1	30.0	1	93	0	51	96	0	0	3	0.21
7185339--7185363	2	12.5	2	100	0	50	48	0	0	52	1.00
7191478--7191509	16	2.0	16	93	0	55	56	15	0	28	1.40
7192528--7192585	19	2.7	22	84	10	68	36	8	17	37	1.80
7199559--7199601	21	2.0	21	90	0	68	37	18	4	39	1.72
7200152--7200191	20	2.0	21	85	14	57	35	2	0	62	1.09
7201831--7201856	5	5.2	5	100	0	52	38	19	19	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7201805--7201856	26	2.0	26	81	7	61	34	15	26	23	1.94
7204987--7205228	121	2.0	121	90	0	385	30	21	21	26	1.98
7220368--7220405	19	2.0	19	100	0	76	26	10	15	47	1.78
7229961--7229985	11	2.3	11	100	0	50	92	8	0	0	0.40
7230944--7231263	158	2.0	159	99	0	633	40	12	6	40	1.70
7233404--7233442	19	2.1	19	100	0	78	35	10	0	53	1.35
7233492--7233546	27	2.0	27	92	0	92	21	25	34	18	1.96
7233501--7233565	27	2.4	27	87	5	87	23	26	29	21	1.99
7233646--7233684	21	1.9	20	89	5	60	71	0	28	0	0.86
7233647--7233686	11	3.7	11	81	18	57	72	0	27	0	0.85
7233761--7233911	63	2.4	64	96	0	180	39	7	9	42	1.68
7233961--7234013	26	2.0	26	92	0	88	43	1	7	47	1.42
7234601--7234645	18	2.5	18	74	0	54	31	8	46	13	1.74
7239207--7239254	24	2.0	24	95	0	87	56	0	6	37	1.25
7239235--7239379	74	1.9	76	83	8	190	37	4	7	49	1.53
7240066--7240206	4	35.2	4	100	0	282	0	25	0	74	0.82
7240253--7240319	27	2.5	27	92	4	109	16	26	29	26	1.97
7240391--7240435	22	2.0	22	95	0	81	53	0	8	37	1.32
7241947--7242000	5	10.8	5	100	0	108	40	0	20	38	1.53
7250355--7250398	16	2.6	17	86	13	56	13	0	11	75	1.06
7252179--7252208	14	2.1	14	100	0	60	46	6	13	33	1.69
7252793--7252866	25	2.9	25	82	11	80	35	24	24	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7252911--7252989	25	3.3	23	75	15	72	34	21	26	17	1.96
7252921--7252987	25	2.8	24	78	13	75	32	20	28	17	1.96
7253008--7253080	38	1.9	38	94	0	128	24	16	28	30	1.96
7253542--7253639	50	2.0	50	85	0	133	31	19	21	27	1.97
7253702--7254048	50	6.9	50	74	0	325	31	23	20	24	1.98
7253542--7253760	121	1.8	121	83	0	294	31	17	22	27	1.97
7253650--7254048	100	4.0	100	91	0	618	31	21	21	25	1.98
7254072--7254458	88	4.3	86	77	9	346	29	21	22	26	1.99
7254071--7254414	44	7.6	45	80	5	268	29	21	21	27	1.98
7254308--7254479	44	3.9	44	87	3	204	27	21	25	25	1.99
7255938--7255978	22	1.9	21	85	5	55	31	4	2	60	1.30
7256432--7256573	73	1.9	73	89	0	221	27	19	18	35	1.95
7265352--7265402	26	2.0	26	92	0	84	45	9	17	27	1.80
7268273--7268336	31	2.1	31	100	0	128	34	6	31	28	1.82
7269390--7269476	39	2.3	39	79	2	95	28	26	21	22	1.99
7269403--7269488	39	2.2	38	77	2	91	31	20	22	25	1.98
7275201--7275268	34	2.0	34	85	5	93	20	26	23	29	1.99
7280705--7280766	26	2.4	26	86	0	79	35	12	12	38	1.82
7286517--7286558	19	2.2	19	86	0	57	61	2	4	30	1.29
7286517--7286616	29	3.4	30	78	10	118	61	2	5	32	1.29
7286918--7286971	19	2.9	18	81	13	56	38	0	0	61	0.96
7286998--7287216	89	2.5	88	86	5	291	29	8	22	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7293083--7293108	4	6.5	4	100	0	52	0	23	0	76	0.78
7299615--7299698	38	2.2	37	75	21	86	19	13	1	66	1.31
7305371--7305416	19	2.4	19	85	7	58	34	4	15	45	1.66
7305782--7306098	158	2.0	159	99	0	627	38	14	8	38	1.77
7309150--7309537	44	8.8	43	70	9	237	29	21	19	29	1.98
7309150--7309269	45	2.7	45	80	3	136	28	22	19	30	1.98
7309372--7309576	41	4.8	42	71	10	132	31	20	20	26	1.98
7309245--7309583	129	2.6	128	85	5	437	30	20	20	28	1.98
7309757--7309887	44	2.9	45	75	6	131	23	20	24	31	1.98
7309904--7310086	45	4.1	45	86	0	222	29	21	16	32	1.95
7309682--7309982	165	1.8	165	86	4	437	24	20	21	32	1.98
7309830--7310309	211	2.3	211	88	0	710	28	21	17	32	1.96
7309949--7310252	166	1.8	166	84	1	421	30	22	15	31	1.95
7310029--7310250	121	1.8	121	81	5	279	29	22	16	31	1.96
7310115--7310478	45	8.1	45	77	5	317	25	23	21	29	1.99
7310156--7310487	89	3.7	89	84	1	342	24	23	22	29	1.99
7310504--7310990	45	11.2	45	73	11	291	27	22	18	31	1.98
7309904--7310909	211	4.7	211	76	7	751	27	22	18	31	1.97
7310549--7310856	166	1.9	166	89	1	483	29	22	15	32	1.95
7310630--7310850	121	1.8	121	81	5	277	28	21	16	32	1.96
7309736--7310991	600	2.1	600	92	0	2107	26	22	19	31	1.98
7312053--7312109	7	7.6	7	76	20	53	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7312058--7312130	29	2.5	29	81	14	87	2	17	0	79	0.85
7312056--7312111	24	2.5	21	83	16	76	0	21	0	78	0.75
7314777--7314828	19	2.7	20	82	5	63	46	11	17	25	1.81
7316850--7316947	45	2.2	44	80	7	108	52	6	7	34	1.54
7318775--7318804	7	4.3	7	100	0	60	26	0	73	0	0.84
7320041--7320125	18	4.7	18	86	0	80	43	20	8	28	1.80
7320050--7320125	9	8.4	9	86	0	89	42	21	9	27	1.83
7323009--7323047	13	3.1	13	85	3	53	82	0	0	17	0.68
7329150--7329204	3	18.3	3	76	0	56	60	5	1	32	1.30
7332683--7332749	34	1.9	35	84	3	91	31	8	13	46	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131