genome.fa.s9.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  79  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26484874--26484934	21	3.0	21	85	2	70	70	0	3	26	1.02
26484895--26484939	21	2.2	20	92	4	72	71	0	2	26	0.98
26487386--26487481	45	2.0	45	82	7	111	59	2	36	2	1.21
26487488--26487517	12	2.4	13	88	11	53	56	0	43	0	0.99
26488155--26488198	15	2.9	17	71	28	53	36	9	0	54	1.32
26490513--26490680	40	4.2	40	97	0	300	25	26	19	29	1.99
26490513--26490680	81	2.1	81	95	2	302	25	26	19	29	1.99
26493632--26493879	48	5.1	48	88	2	304	46	10	10	33	1.71
26497293--26497332	4	9.5	4	89	10	62	0	25	0	75	0.81
26497293--26497332	18	2.4	17	88	12	64	0	25	0	75	0.81
26497292--26497333	22	1.9	22	100	0	84	0	26	0	73	0.83
26497295--26497343	22	2.2	22	85	3	62	2	32	0	65	1.04
26516768--26516803	14	2.6	14	100	0	72	36	13	25	25	1.93
26526722--26526758	18	2.0	19	89	5	58	51	0	43	5	1.24
26527139--26527183	22	2.0	22	83	8	56	53	0	4	42	1.21
26528432--26528530	51	1.9	51	83	0	126	30	20	8	41	1.81
26532092--26532127	18	2.0	18	100	0	72	50	0	16	33	1.46
26532935--26533001	32	2.1	32	85	0	89	19	26	35	17	1.94
26544344--26544412	24	2.9	24	82	18	74	50	0	31	17	1.46
26549021--26549055	18	1.9	18	88	0	52	8	8	8	74	1.23
26551298--26551428	23	5.7	23	71	7	79	18	16	21	44	1.87
26551361--26551443	23	3.6	23	79	6	87	22	15	20	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26558180--26558431	24	10.8	24	69	15	143	54	4	5	34	1.46
26558177--26558465	69	4.1	67	74	10	190	53	5	6	34	1.48
26558279--26558438	23	6.9	24	67	19	79	57	3	5	33	1.40
26558269--26558449	70	2.6	69	75	7	168	55	4	6	33	1.46
26559235--26559279	19	2.4	19	88	0	72	13	24	4	57	1.54
26562414--26562454	21	2.0	21	95	0	73	12	26	4	56	1.56
26565922--26565980	31	1.9	30	86	3	82	64	0	20	15	1.29
26565913--26565973	24	2.6	23	84	7	86	62	0	19	18	1.33
26567442--26567562	35	3.4	35	69	18	115	45	5	8	40	1.58
26577951--26578022	35	2.1	35	86	5	101	29	8	31	30	1.87
26577958--26578033	35	2.2	35	83	4	91	28	7	32	30	1.86
26577982--26578118	69	2.0	69	82	5	170	30	5	31	32	1.79
26578036--26578119	35	2.4	35	86	9	127	32	3	29	34	1.75
26593512--26593564	17	3.2	17	89	2	81	45	7	24	22	1.78
26602931--26602963	17	1.9	17	93	0	57	39	0	9	51	1.34
26603023--26603304	137	2.1	137	100	0	564	44	5	7	41	1.57
26603709--26603870	4	41.0	4	95	2	292	24	0	25	49	1.55
26613601--26613642	17	2.3	19	84	8	61	47	7	2	42	1.43
26614899--26615047	73	2.0	74	98	1	291	32	9	5	53	1.56
26616446--26616498	25	2.1	26	89	3	81	5	18	7	67	1.35
26617114--26617455	41	8.4	41	87	2	447	20	17	26	36	1.94
26617114--26617455	83	4.2	82	85	4	458	20	17	26	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26617896--26617950	22	2.5	22	82	2	58	18	1	43	36	1.61
26618238--26618286	14	3.4	14	81	13	55	22	2	42	32	1.65
26617800--26618706	320	2.8	314	82	8	1098	29	2	25	42	1.69
26618660--26618702	22	2.0	22	81	9	52	32	2	4	60	1.30
26619003--26619041	19	2.1	18	85	4	51	76	2	2	17	1.01
26619044--26619134	47	1.9	47	88	0	137	43	7	2	46	1.44
26619497--26619535	16	2.6	15	88	8	53	17	35	2	43	1.63
26619646--26619707	16	3.9	16	84	0	79	11	45	22	20	1.83
26622461--26622592	66	2.0	66	86	2	185	39	16	27	16	1.90
26622461--26622630	66	2.6	66	82	1	180	38	15	30	15	1.89
26622972--26623163	43	4.5	44	78	8	184	29	17	27	26	1.97
26626235--26626301	34	2.0	34	90	0	107	26	19	23	29	1.98
26626570--26626778	27	7.8	27	85	1	260	37	13	15	33	1.87
26631844--26631876	15	2.2	15	89	10	50	66	0	0	33	0.92
26638708--26638776	27	2.6	26	81	6	84	37	8	20	33	1.83
26638725--26638787	27	2.3	27	81	5	65	42	9	17	30	1.81
26640296--26640323	6	4.7	6	100	0	56	14	0	0	85	0.59
26645843--26647560	859	2.0	859	100	0	3436	36	12	13	38	1.81
26648353--26648408	23	2.4	23	85	5	78	32	1	8	57	1.40
26649067--26649400	166	2.0	167	99	0	661	38	17	4	38	1.72
26656174--26656373	45	4.5	45	78	5	172	26	15	24	35	1.94
26656170--26656334	90	1.8	90	84	0	222	27	15	21	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26660421--26660542	43	2.8	43	84	9	167	31	29	19	18	1.96
26665100--26665182	37	2.2	38	81	10	100	38	14	4	42	1.67
26671671--26671722	24	2.1	24	85	7	68	46	25	0	28	1.53
26675977--26676064	43	2.0	43	97	0	167	40	17	11	30	1.84
26677305--26677531	50	4.4	50	76	9	158	29	21	27	22	1.99
26679469--26679514	16	2.6	17	80	19	51	45	0	32	21	1.52
26679868--26679931	9	7.1	9	89	0	92	29	12	12	45	1.79
26695215--26695260	24	2.0	23	86	4	65	21	13	13	52	1.73
26698027--26698083	27	2.2	26	83	3	69	61	7	3	28	1.39
26704129--26704214	43	2.0	42	84	6	111	48	3	18	29	1.64
26705287--26705355	33	2.1	33	100	0	138	30	20	13	36	1.90
26705287--26705341	17	3.3	17	67	23	53	30	18	14	36	1.91
26715297--26715321	9	2.8	9	100	0	50	0	52	0	48	1.00
26727230--26727290	26	2.3	26	82	0	68	26	19	14	39	1.90
26732962--26733216	75	3.4	76	81	2	282	23	22	21	31	1.98
26734251--26734374	54	2.3	54	87	0	167	27	20	32	19	1.97
26736194--26736232	19	2.1	19	90	0	60	41	7	28	23	1.82
26740912--26740954	16	2.7	16	78	10	52	39	2	2	55	1.25
26741106--26741156	26	2.0	26	88	7	77	64	0	1	33	1.05
26747884--26747916	2	16.5	2	87	12	50	45	3	0	51	1.16
26753238--26753407	50	3.4	50	87	0	241	19	29	22	28	1.98
26756272--26756373	37	2.8	37	83	4	127	26	16	13	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26756932--26756982	19	2.7	19	96	0	93	17	9	31	41	1.82
26757723--26757828	55	1.9	55	86	3	149	15	23	33	27	1.94
26758938--26759186	75	3.3	74	80	8	272	37	18	19	24	1.94
26760509--26760585	38	2.0	38	94	0	136	27	19	14	38	1.90
26765817--26766053	75	3.3	74	81	8	270	37	18	20	23	1.94
26765869--26765995	68	1.9	68	93	0	218	35	19	22	22	1.96
26769115--26769185	36	2.0	36	94	0	124	47	12	11	28	1.76
26770518--26771003	243	2.0	243	96	0	900	25	27	19	27	1.99
26774244--26774314	36	2.0	36	94	0	124	47	12	11	28	1.76
26783710--26783896	60	3.1	60	86	3	216	12	30	21	35	1.90
26787229--26787397	50	3.3	50	82	5	176	27	19	28	24	1.99
26787659--26787697	20	2.0	20	90	10	62	56	5	23	15	1.59
26793205--26793258	27	2.0	27	92	0	81	40	11	22	25	1.87
26795020--26795130	50	2.2	50	80	6	143	25	23	29	21	1.99
26795356--26795394	20	2.0	20	90	10	62	56	5	23	15	1.59
26796645--26796683	14	2.8	14	84	0	51	33	12	25	28	1.93
26797256--26797295	18	2.2	18	86	8	55	60	2	0	37	1.11
26797266--26797316	17	2.8	19	82	11	54	60	0	0	39	0.97
26799972--26800075	44	2.4	44	81	3	120	30	18	20	30	1.96
26800546--26800677	45	3.0	45	77	4	169	17	24	29	28	1.97
26800458--26800677	88	2.5	88	88	1	316	20	25	26	27	1.99
26800535--26800670	44	3.1	44	76	4	166	18	23	31	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26801887--26801921	12	2.9	12	95	0	61	0	17	0	82	0.66
26810004--26810104	50	2.0	50	96	0	184	41	11	1	44	1.52
26810024--26810104	25	3.2	25	66	19	69	43	9	1	45	1.45
26810180--26810234	23	2.4	23	77	17	60	38	0	3	58	1.16
26811007--26811139	42	3.2	42	98	0	257	45	17	13	23	1.83
26812026--26812310	143	2.0	143	93	1	482	30	14	17	37	1.89
26813370--26813417	24	2.0	24	87	0	69	27	14	31	27	1.95
26813394--26813575	50	3.6	50	86	0	238	25	22	30	21	1.99
26813395--26813575	100	1.8	100	86	0	263	25	22	30	20	1.99
26817370--26817425	28	2.0	28	100	0	112	28	10	17	42	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131