genome.fa.s9.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  99  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32888885--32888972	30	3.0	29	73	16	83	7	15	43	32	1.76
32889015--32889063	24	2.0	24	88	0	71	10	16	48	24	1.76
32889073--32889143	21	3.4	19	80	14	70	2	16	0	80	0.83
32889091--32889145	10	5.7	10	85	14	80	0	20	0	80	0.72
32890145--32890213	28	2.5	28	90	4	104	46	8	21	23	1.79
32890775--32891147	75	5.0	75	85	2	453	33	20	17	27	1.96
32899167--32899404	106	2.2	106	95	0	431	31	14	20	32	1.93
32903908--32903932	12	2.1	12	100	0	50	40	40	20	0	1.52
32926750--32926843	28	3.3	28	72	11	91	10	17	37	35	1.84
32926762--32926878	55	2.1	56	84	7	148	12	17	38	31	1.87
32926902--32926949	24	2.0	24	87	0	69	8	14	50	27	1.71
32933468--32933503	12	3.0	12	95	0	63	16	30	16	36	1.91
32935519--32935543	13	1.9	13	100	0	50	16	0	16	68	1.22
32935668--32935792	43	2.9	43	83	7	162	29	14	27	28	1.95
32946862--32948364	761	2.0	741	95	3	2719	41	13	13	32	1.83
32952352--32952390	18	2.2	18	95	0	69	10	5	2	82	0.93
32953460--32953723	18	14.6	18	69	10	126	46	7	12	32	1.71
32953551--32953643	17	5.3	17	68	10	53	40	10	12	35	1.79
32953530--32953707	72	2.4	71	78	6	187	44	7	13	34	1.72
32953905--32954006	19	5.5	17	72	19	71	40	9	14	35	1.79
32953919--32954003	20	4.5	20	72	19	60	38	10	15	35	1.82
32953925--32953982	17	3.3	17	73	17	64	39	10	15	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32953961--32954003	20	2.2	19	91	8	68	32	13	13	39	1.85
32954300--32954356	17	3.4	17	78	2	53	3	12	17	66	1.37
32954456--32954547	13	7.2	13	67	14	57	1	23	0	75	0.88
32954454--32954550	10	9.7	10	70	17	60	1	23	0	75	0.87
32954466--32954551	3	28.0	3	76	15	54	1	26	0	72	0.92
32954459--32954551	34	2.7	33	85	8	114	1	25	0	73	0.90
32954630--32954667	20	1.9	20	88	0	58	0	23	5	71	1.07
32955016--32955170	30	5.2	30	80	7	149	40	4	20	34	1.73
32955016--32955169	59	2.6	58	78	10	168	40	4	20	34	1.73
32955485--32955847	76	4.8	76	88	6	520	35	20	16	26	1.94
32956689--32956731	13	3.4	13	87	9	54	0	9	6	83	0.80
32964143--32964306	19	8.9	19	69	14	85	42	7	11	38	1.71
32964143--32964402	55	4.7	54	75	10	186	44	6	13	35	1.70
32964243--32964328	37	2.4	36	84	7	111	39	6	16	37	1.75
32964266--32964365	37	2.7	37	81	3	94	46	5	16	33	1.68
32964190--32964398	20	11.2	20	68	13	90	43	6	14	35	1.71
32964588--32964631	19	2.2	20	84	8	54	40	4	13	40	1.65
32964626--32964663	16	2.3	17	86	4	51	44	7	15	31	1.75
32964645--32964686	20	2.1	20	86	8	59	35	11	11	40	1.79
32965005--32965044	20	2.0	21	90	5	64	0	17	0	82	0.67
32965302--32965371	7	9.4	7	71	17	52	0	22	0	77	0.78
32965303--32965371	13	5.2	13	76	10	68	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32965306--32965370	10	6.5	10	75	7	60	0	24	0	75	0.81
32965302--32965376	16	5.0	15	75	22	68	0	25	0	74	0.82
32965820--32965982	30	5.5	30	80	6	172	38	3	24	34	1.71
32965845--32965982	59	2.3	60	86	1	197	39	2	23	34	1.67
32966918--32966969	19	2.7	20	82	5	63	46	11	17	25	1.81
32968003--32968054	19	2.7	20	82	5	63	46	9	17	26	1.79
32969616--32969902	127	2.2	128	95	2	515	33	11	16	39	1.84
32971789--32971862	29	2.4	32	76	10	75	25	5	8	60	1.46
32972484--32972527	21	2.0	22	86	4	63	22	13	9	54	1.67
32978886--32978954	32	2.2	32	89	0	102	21	24	17	36	1.95
32983650--32983678	12	2.5	12	94	5	51	34	17	24	24	1.96
32987364--32987467	54	1.9	54	84	3	138	37	4	28	28	1.78
32988406--32988440	4	8.8	4	100	0	70	25	0	0	74	0.82
32990409--32990475	34	1.9	35	84	3	91	32	8	13	44	1.75
32999696--32999741	24	2.0	23	86	4	65	47	0	15	36	1.45
33011355--33011405	15	3.8	14	80	14	54	50	1	1	45	1.24
33013681--33014039	178	2.0	179	99	0	711	33	9	13	42	1.77
33015179--33015203	13	1.9	13	100	0	50	52	0	8	40	1.31
33021156--33021185	14	2.1	15	93	6	53	40	0	0	60	0.97
33021827--33021856	16	1.9	15	93	6	51	0	6	0	93	0.35
33040307--33040350	21	2.0	20	87	12	61	45	0	2	52	1.13
33040307--33040349	22	2.0	22	90	9	70	46	0	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33041021--33041084	17	3.6	17	74	15	67	26	12	14	46	1.79
33041013--33041083	36	2.0	36	97	0	133	25	12	15	46	1.81
33041012--33041068	19	3.1	19	71	19	66	26	12	15	45	1.82
33043065--33043109	24	2.0	23	86	8	65	51	0	4	44	1.21
33044311--33044531	119	1.8	120	82	3	284	20	13	19	46	1.84
33046109--33046178	26	2.7	25	74	12	61	48	0	1	50	1.09
33046164--33046193	15	2.0	15	93	0	51	50	0	0	50	1.00
33056444--33056473	3	10.0	3	100	0	60	0	33	0	66	0.92
33061518--33061576	29	2.0	30	83	3	75	40	3	8	47	1.51
33062008--33062050	17	2.5	17	100	0	86	39	9	13	37	1.78
33062994--33063320	165	2.0	163	98	1	627	32	13	7	47	1.70
33067323--33067356	17	1.9	18	88	5	52	35	23	0	41	1.55
33067765--33067809	18	2.4	19	85	10	58	13	8	4	73	1.23
33071528--33071557	14	2.1	14	93	0	51	46	20	3	30	1.66
33073014--33073083	31	2.3	31	87	5	97	24	2	18	54	1.57
33080822--33080870	24	2.1	23	92	3	80	42	20	10	26	1.84
33082167--33082226	30	2.0	30	83	3	77	33	13	1	51	1.51
33091852--33091893	23	1.9	22	85	9	59	59	0	4	35	1.19
33093310--33093510	99	2.0	100	99	0	395	43	8	4	42	1.57
33102629--33102666	19	2.0	19	100	0	76	26	5	15	52	1.64
33117919--33117949	15	2.0	16	93	6	55	32	0	22	45	1.53
33121398--33121485	38	2.4	35	78	15	97	46	2	2	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33141157--33141231	29	2.6	29	76	13	84	34	2	2	60	1.25
33142738--33142769	17	1.9	17	93	6	57	21	0	0	78	0.76
33158031--33158394	115	3.2	115	95	2	639	39	17	16	26	1.91
33158407--33158754	111	3.1	110	94	2	592	23	15	15	44	1.85
33158877--33159020	72	2.0	72	97	0	270	29	6	21	42	1.77
33163583--33163625	22	2.0	22	95	0	77	9	20	27	41	1.83
33163675--33163832	43	3.7	43	90	2	219	29	30	20	20	1.97
33163697--33163832	43	3.2	43	95	0	236	29	32	20	17	1.96
33163925--33163971	23	2.0	24	95	4	87	38	4	0	57	1.18
33167028--33167089	14	4.4	14	78	15	58	37	37	0	25	1.57
33167025--33167089	21	3.0	22	77	18	66	38	35	0	26	1.57
33167198--33167244	7	6.6	7	79	11	51	38	40	0	21	1.53
33167866--33168100	41	5.7	42	82	4	223	28	24	25	20	1.99
33167879--33168100	82	2.7	82	87	0	291	29	24	25	20	1.99
33167878--33168100	123	1.8	124	87	2	333	30	24	25	20	1.99
33171332--33171389	30	1.9	30	89	0	89	31	24	3	41	1.71
33174912--33174959	21	2.1	24	85	11	66	43	14	6	35	1.71
33179927--33180027	50	2.0	50	100	0	202	19	11	33	34	1.89
33181078--33181273	96	2.0	96	98	0	374	33	11	23	31	1.91
33184230--33184281	14	3.2	18	65	30	53	34	9	13	42	1.77
33184228--33184290	30	2.1	30	100	0	126	31	9	12	46	1.74
33184386--33184434	24	2.0	24	84	0	62	44	4	12	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33188104--33188162	13	4.6	13	72	17	52	38	0	3	57	1.15
33193798--33193879	27	2.8	27	87	10	101	18	21	29	30	1.97
33193907--33194033	33	3.6	33	72	19	112	20	20	26	32	1.97
33193825--33194082	80	3.3	80	82	6	357	22	18	26	32	1.97
33193825--33194111	74	3.7	77	78	10	304	22	19	26	31	1.98
33194059--33194112	27	2.0	27	88	0	81	24	24	27	24	2.00
33210903--33210947	23	2.0	22	87	8	65	53	4	0	42	1.21
33216628--33216668	2	20.5	2	89	0	64	46	2	2	48	1.28
33229024--33229184	46	3.6	45	91	5	247	33	14	23	27	1.94
33229563--33229955	195	2.0	196	98	1	770	31	9	19	39	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131