genome.fa.s9.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  42  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14001988--14002037	19	2.5	20	87	9	68	56	10	0	34	1.33
14004504--14004562	32	1.9	31	83	10	77	33	10	1	54	1.44
14005840--14006171	41	8.1	41	79	4	339	21	19	28	29	1.98
14006543--14006640	20	4.9	20	82	1	108	24	32	17	25	1.97
14006556--14006610	10	5.5	10	76	8	58	25	30	18	25	1.98
14006542--14006640	40	2.5	40	83	6	121	24	32	18	25	1.97
14008038--14008084	12	4.3	11	81	15	53	78	0	4	17	0.90
14008038--14008084	21	2.2	20	92	7	76	78	0	4	17	0.90
14008050--14008074	9	2.8	9	100	0	50	84	0	0	16	0.63
14009097--14009184	36	2.4	36	98	0	167	54	2	29	13	1.51
14009196--14009253	18	3.2	18	85	0	80	65	3	20	10	1.38
14009221--14009297	30	2.6	29	72	13	75	59	2	24	12	1.46
14011004--14011101	20	4.9	20	82	1	108	24	32	17	25	1.97
14011017--14011071	10	5.5	10	76	8	58	25	30	18	25	1.98
14011003--14011101	40	2.5	40	83	6	121	24	32	18	25	1.97
14012407--14012462	21	2.7	21	80	5	60	26	1	39	32	1.67
14012395--14012450	29	2.0	28	89	3	85	26	3	39	30	1.73
14012396--14012442	14	3.3	14	75	16	51	25	2	40	31	1.68
14012587--14012632	14	3.4	14	75	6	58	19	0	36	43	1.51
14012644--14012697	22	2.5	21	85	8	65	22	0	25	51	1.48
14012665--14012782	7	16.7	7	72	8	69	21	2	33	42	1.66
14012651--14012697	14	3.3	14	84	3	58	21	0	25	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14012665--14012782	21	5.6	21	75	9	96	21	2	33	42	1.66
14016539--14016698	43	3.8	42	83	3	180	26	18	26	28	1.98
14016539--14016695	85	1.8	85	85	5	219	26	17	26	29	1.98
14016638--14016767	69	1.9	68	91	1	215	21	21	27	29	1.99
14016712--14016813	43	2.4	43	98	0	195	25	20	28	25	1.99
14016614--14016842	111	2.1	110	80	4	255	24	19	27	28	1.99
14020334--14020489	85	1.8	85	90	0	249	28	16	18	35	1.93
14020602--14020636	18	1.9	18	100	0	70	45	11	20	22	1.82
14022596--14022724	57	2.2	58	87	2	188	20	13	24	41	1.89
14022596--14022741	29	5.1	29	85	1	186	22	12	23	41	1.88
14022823--14022920	28	3.5	28	80	6	117	14	20	23	41	1.89
14022872--14023064	89	2.2	89	93	0	323	26	22	20	30	1.99
14024980--14025100	30	4.0	30	90	1	179	36	9	14	39	1.79
14024980--14025100	60	2.0	61	91	1	199	36	9	14	39	1.79
14025300--14025406	41	2.6	41	95	1	189	25	18	25	30	1.98
14030217--14030254	14	2.6	15	84	16	53	57	2	39	0	1.12
14038684--14038766	25	3.3	25	84	0	112	32	22	20	24	1.98
14038697--14038803	25	4.3	25	80	0	97	35	18	21	24	1.96
14038697--14038803	50	2.1	50	82	0	124	35	18	21	24	1.96
14042321--14042358	14	2.6	15	84	16	53	57	0	39	2	1.12
14044807--14046051	509	2.4	508	94	0	2125	39	10	19	31	1.85
14047495--14047699	41	5.0	41	79	3	198	20	30	15	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14047495--14047703	83	2.5	81	82	4	231	20	29	15	34	1.93
14061753--14061806	27	2.0	27	96	0	99	18	16	33	31	1.93
14061678--14061867	102	1.9	102	88	2	292	21	15	28	34	1.94
14061778--14061977	75	2.6	77	86	3	280	22	16	26	36	1.94
14068731--14068782	27	1.9	27	92	0	86	19	23	30	26	1.98
14068796--14068900	44	2.4	44	85	3	142	22	17	25	34	1.96
14074407--14074646	85	2.8	84	87	1	318	22	17	25	33	1.96
14074398--14074638	43	5.7	42	76	8	213	24	15	25	34	1.95
14075447--14075500	27	2.0	27	100	0	108	22	14	11	51	1.73
14078598--14078671	36	2.1	36	97	0	139	27	24	17	31	1.97
14088203--14088236	17	2.0	17	94	0	59	20	11	8	58	1.59
14093027--14093065	18	2.2	18	86	9	53	25	12	33	28	1.93
14103022--14103086	34	1.9	33	84	3	85	15	24	47	12	1.79
14107804--14107861	18	3.2	18	85	4	64	24	12	31	32	1.91
14113315--14113382	25	2.7	25	83	0	82	29	22	23	25	1.99
14116885--14116997	58	1.9	58	92	0	190	22	22	6	49	1.71
14122247--14122321	37	2.0	37	92	0	123	24	24	9	42	1.83
14122929--14122974	19	2.5	19	92	3	76	43	15	4	36	1.66
14128035--14128113	39	2.0	39	100	0	158	35	12	5	46	1.64
14133296--14133335	15	2.7	15	84	0	53	70	0	0	30	0.88
14135392--14135433	17	2.5	17	92	0	66	14	26	35	23	1.93
14135392--14135439	17	2.8	17	81	6	62	12	22	37	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14138376--14138467	28	3.2	28	71	14	80	30	22	14	32	1.93
14138375--14138488	57	2.0	58	87	1	167	31	21	14	31	1.94
14140676--14140717	17	2.5	17	92	0	66	14	26	35	23	1.93
14140676--14140723	17	2.8	17	81	6	62	12	22	37	27	1.90
14143660--14143751	28	3.2	28	71	14	80	30	22	14	32	1.93
14143659--14143772	57	2.0	58	87	1	167	31	21	14	31	1.94
14145511--14145565	28	2.0	28	85	7	76	34	21	23	20	1.97
14145958--14146030	17	4.9	14	73	23	60	17	17	38	26	1.92
14145976--14146029	13	3.8	13	79	16	54	16	16	40	25	1.89
14145958--14146030	28	2.4	31	84	13	98	17	17	38	26	1.92
14145958--14146012	13	3.7	14	79	16	58	16	18	38	27	1.92
14151542--14152154	204	3.0	204	99	0	1196	33	15	16	33	1.91
14155330--14155378	23	2.1	24	84	3	64	14	18	42	24	1.87
14158212--14158366	75	2.1	75	81	7	181	29	14	11	44	1.81
14164479--14164516	20	1.9	20	94	0	67	55	0	26	18	1.43
14165932--14165971	13	3.1	13	77	0	53	37	0	2	60	1.11
14168261--14168346	33	2.7	32	80	8	102	38	10	10	40	1.74
14169231--14169279	19	2.8	17	76	11	53	63	10	8	18	1.50
14171089--14171123	18	1.9	18	88	0	52	54	11	8	25	1.64
14172262--14172301	20	2.0	20	85	5	53	35	20	32	12	1.90
14172327--14172359	17	1.9	17	93	0	57	33	30	21	15	1.94
14173666--14173782	62	1.9	62	84	5	159	50	4	5	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14174279--14174318	19	2.1	19	85	0	53	30	2	7	60	1.38
14179564--14179610	22	2.1	22	84	0	58	46	4	2	46	1.34
14188383--14188443	26	2.4	26	94	2	106	14	27	26	31	1.95
14189119--14189259	44	3.2	42	83	9	174	57	7	11	23	1.59
14189229--14189291	33	1.9	33	96	0	117	57	9	12	20	1.63
14189290--14189829	44	12.0	44	69	13	251	27	21	19	31	1.97
14189533--14189646	43	2.6	43	83	5	131	28	21	20	30	1.98
14189713--14189813	45	2.2	45	85	3	132	25	25	16	31	1.97
14195092--14195134	19	2.2	21	88	12	65	60	4	2	32	1.30
14201862--14201893	5	6.4	5	100	0	64	40	0	0	59	0.97
14205483--14205642	25	6.4	25	72	12	105	32	20	26	21	1.97
14205719--14205778	26	2.3	26	88	0	93	40	23	20	16	1.91
14205734--14205793	26	2.3	26	88	5	86	35	25	23	16	1.95
14205884--14205945	24	2.6	24	82	5	72	33	19	30	16	1.94
14214142--14214231	46	2.0	45	89	4	137	63	11	5	20	1.47
14215572--14215655	34	2.5	35	86	5	118	61	7	5	25	1.44
14215963--14216039	38	2.0	38	100	0	154	40	25	5	28	1.77
14222905--14223104	40	5.0	40	86	0	220	23	21	20	35	1.96
14222915--14223059	20	7.2	20	70	6	87	21	21	22	35	1.96
14226201--14226309	40	2.7	40	79	13	116	33	22	31	12	1.91
14226201--14226309	20	5.5	19	69	17	78	33	22	31	12	1.91
14226258--14226369	40	2.8	40	81	4	145	37	16	28	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14234298--14234335	18	2.1	18	90	0	58	63	7	2	26	1.35
14240033--14240084	17	3.1	17	70	10	52	21	26	17	34	1.95
14240087--14240160	34	2.2	34	78	4	78	37	24	10	27	1.88
14250295--14250332	18	2.3	16	80	20	51	34	0	5	60	1.19
14256861--14256972	36	2.9	39	80	12	144	33	19	24	23	1.97
14257027--14257402	41	9.2	41	89	2	515	17	19	33	29	1.94
14257318--14257393	40	1.9	39	89	2	116	21	18	23	36	1.95
14257606--14257680	7	10.6	7	78	2	78	16	2	32	49	1.59
14258058--14258087	14	2.1	14	93	0	51	30	0	33	36	1.58
14261289--14261556	43	6.2	43	83	5	310	22	18	31	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131