genome.fa.s9.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  127  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41933540--41933800	95	2.7	96	85	5	336	41	1	18	39	1.58
41934051--41934076	2	13.0	2	100	0	52	50	0	0	50	1.00
41934393--41934514	40	3.0	40	85	2	163	22	24	24	27	2.00
41941819--41942064	91	2.7	91	93	3	399	60	4	4	30	1.35
41950969--41951072	52	2.0	52	84	0	136	32	15	17	34	1.91
41952840--41953152	156	2.0	157	99	0	619	40	9	8	41	1.69
41954304--41954376	29	2.5	29	82	6	76	43	4	10	41	1.59
41954531--41954588	29	2.0	29	93	0	98	43	12	5	39	1.64
41958630--41958690	17	3.6	17	71	8	54	22	0	4	72	1.04
41958630--41958672	8	5.2	8	81	15	52	20	0	4	74	1.00
41978099--41978144	24	1.9	24	90	0	74	34	10	10	43	1.75
41985363--41985409	21	2.2	21	78	17	53	44	2	2	51	1.25
41985298--41985523	112	2.0	114	96	1	420	39	11	5	43	1.63
41986479--41986566	38	2.3	39	88	4	124	37	2	7	52	1.43
41993347--41993540	97	2.0	97	100	0	388	39	8	20	31	1.82
41994292--41994354	27	2.4	27	84	7	76	36	23	20	19	1.95
41994306--41994394	27	3.2	28	80	6	92	34	19	24	21	1.96
41994524--41994836	27	11.7	27	81	0	324	25	15	17	41	1.89
41997705--41997729	12	2.1	12	100	0	50	24	24	24	28	2.00
42000968--42001041	37	2.0	37	100	0	148	37	18	16	27	1.92
42004786--42004869	17	4.8	17	73	12	71	23	4	4	66	1.30
42006305--42006331	14	1.9	14	100	0	54	25	14	14	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42011505--42011540	18	2.0	18	100	0	72	33	11	27	27	1.91
42011726--42011769	22	2.0	23	86	4	63	40	2	0	56	1.11
42011835--42011877	20	2.1	21	86	4	61	74	0	4	20	1.00
42014062--42014238	18	9.6	18	69	22	93	48	9	12	29	1.71
42014069--42014103	15	2.2	17	90	10	56	57	11	11	20	1.64
42014105--42014246	18	7.6	19	78	12	152	48	9	12	29	1.72
42014105--42014237	37	3.6	38	84	10	186	47	9	12	30	1.73
42014243--42014294	18	2.8	18	88	2	77	46	7	7	38	1.61
42014243--42014300	18	3.2	18	85	2	53	48	6	8	36	1.61
42014526--42014569	22	2.0	23	86	13	65	68	0	4	27	1.09
42014715--42014783	10	6.9	10	76	5	59	0	20	0	79	0.73
42014727--42014780	9	5.9	9	79	12	56	0	18	0	81	0.69
42014715--42014782	21	3.3	20	85	8	93	0	20	0	79	0.73
42014715--42014780	30	2.2	30	86	5	89	0	19	0	80	0.72
42015037--42015082	9	4.9	10	80	20	55	0	15	0	84	0.62
42015033--42015083	16	2.9	17	91	8	77	0	15	0	84	0.63
42015036--42015094	17	3.0	20	80	14	70	0	18	0	81	0.69
42015078--42015114	12	3.1	13	92	7	53	0	37	0	62	0.96
42015443--42015587	29	4.9	29	82	8	159	46	4	14	35	1.64
42015457--42015587	59	2.2	57	86	6	174	47	3	12	36	1.59
42015581--42015617	17	2.1	19	90	10	60	18	0	2	78	0.87
42021054--42021094	21	2.0	21	95	0	73	29	12	29	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42021087--42021149	22	3.0	21	84	9	76	38	19	26	15	1.92
42023954--42024116	80	2.0	81	98	1	319	52	11	4	31	1.58
42031036--42031070	3	11.7	3	100	0	70	0	0	34	65	0.93
42034761--42034946	91	2.1	91	91	1	302	28	7	17	46	1.75
42036792--42036852	26	2.3	26	88	5	88	14	21	24	39	1.91
42036903--42036948	24	1.9	24	86	0	65	21	23	15	39	1.92
42037743--42039623	940	2.0	940	100	0	3762	29	19	19	31	1.96
42050019--42050281	131	2.0	132	99	0	519	37	11	8	42	1.71
42057145--42057179	18	1.9	18	88	0	52	31	14	17	37	1.89
42057374--42057610	118	2.0	119	99	0	467	29	16	18	35	1.93
42060869--42060936	27	2.5	27	76	4	66	41	22	22	14	1.90
42063238--42063333	37	2.6	37	86	0	138	23	16	26	33	1.96
42066114--42066149	18	1.9	19	88	5	56	33	0	2	63	1.08
42067295--42067353	23	2.6	23	84	7	68	37	15	20	27	1.92
42068766--42068924	78	2.0	79	97	2	302	34	23	5	36	1.77
42077241--42077266	2	13.0	2	100	0	52	50	0	0	50	1.00
42090504--42090537	5	6.8	5	93	0	59	55	0	0	44	0.99
42092013--42092173	77	2.1	78	96	2	297	40	7	8	43	1.62
42093168--42093233	31	2.1	31	88	0	96	30	16	12	40	1.85
42098338--42098394	21	2.7	20	73	13	51	57	10	12	19	1.63
42105961--42106010	23	2.1	24	85	10	68	70	6	24	0	1.10
42108301--42108339	1	39.0	1	100	0	78	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42113537--42113583	18	2.7	17	78	12	51	36	8	0	55	1.31
42116462--42116553	23	3.7	24	79	15	98	27	3	2	67	1.18
42116451--42116553	26	4.0	25	78	14	104	28	2	2	66	1.21
42116462--42116565	26	4.1	27	75	18	73	25	4	2	67	1.24
42128368--42128410	22	1.9	22	85	4	59	30	11	4	53	1.57
42130210--42130245	17	2.1	17	94	0	63	19	16	19	44	1.87
42133601--42133661	7	8.7	7	79	13	72	70	0	19	9	1.15
42133601--42133660	21	2.9	21	97	2	113	70	0	20	10	1.16
42134952--42135212	132	2.0	133	87	0	380	30	14	22	31	1.94
42134952--42135226	44	6.2	44	76	7	261	30	14	22	32	1.94
42135063--42135254	88	2.2	87	83	7	228	31	13	23	30	1.93
42134973--42135256	132	2.1	130	82	5	329	31	14	23	30	1.94
42135411--42135605	89	2.2	88	88	8	281	31	12	24	31	1.92
42135374--42135554	44	4.1	44	80	4	238	30	12	23	33	1.92
42135374--42135575	44	4.6	44	78	8	223	30	12	23	33	1.92
42135374--42135613	133	1.8	130	88	6	365	30	12	23	32	1.92
42135411--42135605	44	4.4	43	72	18	143	31	12	24	31	1.92
42135026--42135722	349	2.0	348	95	0	1243	32	15	24	27	1.95
42136762--42136804	22	1.9	22	85	4	59	30	11	4	53	1.57
42136982--42137045	27	2.3	28	84	7	78	31	7	4	56	1.49
42137297--42137341	21	2.0	23	83	8	58	44	8	2	44	1.47
42140100--42140132	13	2.5	13	90	9	50	54	15	3	27	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42140342--42140408	21	3.1	21	70	8	55	32	25	7	34	1.84
42141704--42141751	24	2.0	25	87	4	71	45	4	0	50	1.21
42152592--42152616	6	4.2	6	100	0	50	52	0	0	48	1.00
42153334--42153374	2	20.5	2	100	0	82	0	51	0	48	1.00
42159068--42159155	17	5.2	18	78	13	89	45	14	6	32	1.72
42159084--42159168	34	2.5	34	86	5	118	43	15	5	35	1.71
42159101--42159166	17	3.9	17	87	0	96	43	15	4	36	1.67
42159813--42159883	18	3.9	18	77	0	79	42	22	7	28	1.79
42159810--42159891	36	2.3	36	84	0	101	43	21	7	26	1.79
42160138--42160268	29	4.3	29	81	13	93	45	18	5	31	1.72
42160117--42160199	37	2.3	36	83	10	98	49	18	3	28	1.64
42160169--42160268	29	3.3	29	87	4	137	43	20	6	31	1.76
42171795--42171819	11	2.3	11	100	0	50	52	16	8	24	1.70
42174922--42175027	48	2.2	47	87	9	153	33	25	15	25	1.95
42175074--42175109	18	1.9	19	88	5	56	38	19	0	41	1.52
42181225--42181271	16	2.9	16	100	0	94	57	4	12	25	1.54
42188286--42188352	29	2.3	29	81	0	80	23	14	17	43	1.87
42189672--42189711	21	1.9	21	94	0	71	47	22	0	30	1.52
42194788--42194821	2	17.0	2	100	0	68	50	0	50	0	1.00
42198592--42198659	31	2.2	30	80	10	75	39	11	11	36	1.79
42198607--42198675	31	2.2	31	86	0	102	36	11	10	42	1.75
42199271--42199318	10	4.8	10	78	19	55	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42199276--42199318	11	4.2	11	80	17	56	72	0	0	27	0.85
42199275--42199318	19	2.3	19	92	0	70	70	0	0	29	0.88
42211918--42211965	18	2.6	19	80	12	55	58	2	2	37	1.22
42213599--42213700	50	2.0	50	86	3	143	44	13	4	37	1.66
42221502--42221562	25	2.4	25	81	8	70	31	22	26	19	1.98
42221516--42221586	25	2.8	25	81	8	65	30	19	28	21	1.97
42221672--42221721	23	2.2	23	85	0	64	34	20	26	20	1.96
42221656--42221780	25	5.0	25	63	27	68	33	20	23	23	1.97
42222832--42222870	5	7.8	5	100	0	78	58	0	0	41	0.98
42225154--42225287	66	2.0	66	98	0	259	26	20	17	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131