genome.fa.s9.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  29  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9480797--9480835	16	2.4	16	91	0	60	53	10	0	35	1.35
9480905--9480946	16	2.6	16	92	0	66	42	7	2	47	1.43
9483686--9483760	25	3.0	25	74	20	75	28	20	28	24	1.99
9483724--9483777	25	2.2	25	82	0	63	31	24	25	18	1.97
9483862--9483923	25	2.5	25	73	5	63	43	19	19	17	1.88
9489840--9489885	23	2.0	23	91	8	76	30	8	21	39	1.84
9492637--9492706	25	2.7	26	78	6	81	28	17	27	27	1.97
9492749--9492864	24	4.8	24	71	11	83	40	21	23	14	1.90
9495178--9495207	11	2.9	10	90	9	51	10	6	13	70	1.34
9498052--9498080	3	9.7	3	100	0	58	31	0	0	68	0.89
9503719--9503756	18	2.2	17	86	9	51	28	13	0	57	1.36
9504147--9504275	69	1.9	69	95	0	231	31	13	6	48	1.69
9510793--9510824	13	2.5	13	100	0	64	37	15	18	28	1.92
9511618--9511698	29	2.8	29	88	0	126	30	11	22	35	1.89
9514178--9514243	33	2.0	33	100	0	132	45	12	9	33	1.73
9515657--9515698	18	2.3	18	100	0	84	66	9	4	19	1.38
9516689--9516762	37	2.0	37	97	0	139	41	9	13	35	1.77
9520151--9520224	29	2.5	29	86	4	94	47	14	14	22	1.82
9522450--9522639	90	2.1	90	99	0	371	43	17	14	24	1.87
9525946--9526085	21	6.9	21	83	1	153	43	16	23	16	1.87
9525946--9526085	42	3.4	41	86	5	169	43	16	23	16	1.87
9525965--9526092	63	2.1	61	86	2	175	44	15	21	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9527593--9527630	20	1.9	20	94	0	67	42	2	13	42	1.57
9531130--9531231	50	2.0	50	98	0	195	15	31	22	30	1.95
9532804--9532852	22	2.3	22	85	3	64	20	12	26	40	1.87
9538526--9538634	44	2.6	40	76	17	121	34	28	5	31	1.80
9538549--9538639	45	2.0	45	87	2	130	38	28	5	27	1.79
9538620--9538671	16	3.2	16	94	0	95	36	36	1	25	1.67
9541195--9541343	73	2.0	73	100	0	298	25	25	22	26	2.00
9542694--9542744	12	4.2	12	73	14	50	50	0	0	49	1.00
9542687--9542738	25	2.0	26	88	3	79	48	0	0	51	1.00
9542698--9542749	25	2.2	25	86	6	72	46	0	0	53	1.00
9545901--9545930	14	2.1	14	93	0	51	30	0	16	53	1.44
9553449--9553498	24	2.0	27	88	11	79	34	0	14	52	1.42
9553454--9553507	24	2.2	24	80	12	56	31	1	18	48	1.59
9555110--9555141	4	8.0	4	92	0	55	25	3	25	46	1.67
9559689--9559738	23	2.1	24	85	10	68	50	2	8	40	1.43
9565949--9566000	19	2.7	19	81	3	59	59	5	1	32	1.32
9565996--9566040	19	2.5	17	83	16	56	60	0	0	40	0.97
9566007--9566046	19	2.0	20	95	4	73	62	0	0	37	0.95
9567079--9567121	23	1.9	22	90	4	68	34	2	0	62	1.08
9568387--9568437	25	2.1	23	85	7	66	37	1	0	60	1.08
9576546--9576594	23	2.1	23	100	0	98	42	4	8	44	1.53
9579435--9579559	62	2.0	62	92	0	205	30	16	21	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9584739--9584781	10	4.1	10	82	11	50	37	0	4	58	1.19
9590110--9590568	44	10.6	44	70	10	293	25	21	22	31	1.98
9590061--9590586	129	4.1	129	88	1	768	25	21	21	31	1.98
9590151--9590585	85	5.1	85	68	11	217	25	21	21	31	1.98
9590683--9591192	218	2.3	217	88	1	770	28	25	18	28	1.98
9590769--9591139	44	8.6	43	70	12	215	29	23	17	29	1.97
9592463--9592609	53	2.8	53	93	1	242	14	23	19	42	1.87
9597464--9597508	22	2.0	22	83	8	56	75	4	15	4	1.12
9600625--9600654	15	2.0	15	100	0	60	26	26	0	46	1.53
9601966--9601990	11	2.3	11	100	0	50	48	16	8	28	1.74
9618101--9618130	3	10.0	3	100	0	60	0	0	66	33	0.92
9618638--9618671	13	2.6	13	85	0	50	32	20	8	38	1.84
9618904--9618937	16	2.1	16	94	0	59	26	0	5	67	1.13
9628097--9628150	22	2.2	24	81	15	67	1	18	3	75	1.03
9628112--9628145	16	2.2	15	89	5	50	2	14	0	82	0.79
9631100--9631124	6	4.2	6	100	0	50	16	0	48	36	1.46
9635843--9635911	18	3.7	18	76	16	61	37	2	0	59	1.12
9636312--9636342	14	2.1	15	94	5	55	74	0	6	19	1.03
9637334--9637410	29	2.5	31	77	4	86	45	14	14	25	1.82
9641367--9641393	3	9.0	3	100	0	54	33	33	0	33	1.58
9644730--9644777	4	12.5	4	83	16	50	77	0	20	2	0.88
9644729--9644777	18	2.8	18	84	3	64	75	0	22	2	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9644799--9644859	28	2.2	29	85	5	81	31	0	13	55	1.38
9644968--9645015	4	12.5	4	83	16	50	77	0	20	2	0.88
9644967--9645015	18	2.8	18	84	3	64	75	0	22	2	0.90
9645037--9645097	28	2.2	29	85	5	81	31	0	13	55	1.38
9644715--9645192	238	2.0	239	99	0	949	38	0	17	43	1.55
9645141--9645608	104	4.6	100	80	14	522	27	0	14	57	1.42
9645609--9645652	21	2.1	22	91	8	74	25	0	11	63	1.27
9645617--9645661	20	2.2	21	84	4	56	26	0	15	57	1.38
9647754--9647876	48	2.6	48	85	5	169	42	9	12	35	1.75
9649780--9649832	26	2.1	25	82	6	63	35	13	1	49	1.53
9649791--9649840	26	1.9	26	87	0	73	34	14	0	52	1.42
9651662--9651715	15	3.7	15	79	16	60	12	16	0	70	1.17
9651666--9651715	7	7.0	7	79	20	59	14	16	0	70	1.18
9652204--9652277	10	6.7	10	75	17	58	0	6	9	83	0.80
9655334--9655371	18	2.1	19	85	5	51	50	2	10	36	1.51
9655308--9655357	26	1.9	26	87	0	73	52	0	14	34	1.42
9655509--9655542	3	11.3	3	100	0	68	67	0	0	32	0.91
9659692--9659732	11	3.7	11	86	0	55	68	7	0	24	1.15
9659692--9659738	11	4.2	11	81	13	51	70	6	0	23	1.10
9660853--9660907	16	3.4	16	84	0	65	41	3	30	23	1.72
9660887--9660979	44	2.1	46	91	4	154	29	4	30	36	1.77
9660887--9660983	46	2.3	44	84	12	123	29	4	30	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9661471--9661604	40	3.4	39	75	6	128	37	20	19	23	1.94
9671451--9671620	66	2.6	66	87	1	225	40	18	27	12	1.88
9671592--9671703	21	5.3	21	86	0	89	33	17	43	4	1.69
9671602--9671703	42	2.4	42	86	0	132	34	17	44	3	1.68
9672006--9672319	43	7.3	43	76	7	217	24	19	28	27	1.99
9672006--9672255	86	2.9	87	82	4	285	25	17	30	26	1.97
9672239--9672361	42	2.9	41	81	6	113	26	27	21	24	1.99
9672498--9672540	22	2.0	22	95	0	77	41	27	20	9	1.83
9673030--9673072	10	4.4	10	77	16	54	32	32	9	25	1.88
9675222--9675285	32	2.0	32	81	0	74	50	1	0	48	1.10
9695396--9695508	55	2.1	55	93	0	190	52	16	7	23	1.69
9698166--9698218	17	3.2	16	76	7	52	28	20	0	50	1.48
9698983--9699035	25	2.1	25	100	0	106	11	24	7	56	1.60
9699213--9699351	73	1.9	75	86	3	201	35	11	22	30	1.90
9699778--9699819	21	2.0	21	85	0	57	35	7	19	38	1.79
9705463--9705534	37	1.9	38	83	8	94	51	2	2	43	1.30
9705950--9705989	19	2.1	19	86	9	55	32	2	5	60	1.32
9707147--9707176	15	2.0	15	93	0	51	73	10	6	10	1.25
9713449--9713753	153	2.0	153	98	0	583	36	13	16	33	1.88
9713935--9714114	75	2.4	73	83	3	209	24	24	21	29	1.99
9714016--9714127	35	3.1	35	73	7	116	23	23	23	30	1.99
9713952--9714127	73	2.4	73	83	5	219	23	23	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9715872--9715922	25	2.0	25	100	0	102	11	37	3	47	1.59
9718647--9718721	37	2.0	37	94	0	132	37	24	0	38	1.55
9721629--9721767	69	2.0	69	97	0	260	43	11	18	26	1.84
9722998--9723093	40	2.6	35	69	15	93	33	19	21	25	1.97
9722941--9723185	75	3.3	75	79	7	243	30	22	22	25	1.99
9722981--9723092	35	3.1	35	70	12	107	31	20	22	25	1.98
9723228--9723273	20	2.2	21	84	3	67	34	26	2	36	1.69
9723258--9723332	37	2.0	37	97	0	141	38	22	0	38	1.55
9723271--9723327	17	3.2	17	70	29	55	35	21	0	43	1.52
9730841--9730886	24	1.9	24	82	8	58	28	0	0	71	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131