genome.fa.s9.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  117  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38751505--38751566	31	2.0	31	90	0	97	38	11	6	43	1.66
38756413--38756587	96	1.8	96	82	0	224	31	32	15	21	1.94
38756498--38757448	120	7.9	120	84	1	1017	28	29	15	27	1.96
38758875--38758917	18	2.3	18	84	11	52	30	2	0	67	1.03
38761208--38761243	18	2.0	18	88	0	54	55	0	5	38	1.23
38761767--38761809	18	2.4	18	88	7	61	53	0	0	46	1.00
38769102--38769142	21	1.9	22	85	5	57	19	14	2	63	1.41
38778665--38778730	32	2.1	32	94	0	114	43	10	21	24	1.83
38783601--38783671	31	2.3	32	80	9	85	43	21	12	22	1.86
38783578--38783972	196	2.0	196	95	1	711	34	21	17	26	1.95
38783898--38783940	21	2.0	21	86	0	59	27	20	23	27	1.99
38785004--38785121	3	41.0	3	80	13	124	2	30	1	65	1.16
38785191--38785259	33	2.1	34	97	2	131	23	17	20	39	1.92
38785527--38785575	24	2.2	21	89	10	71	28	2	0	69	1.00
38786113--38786196	20	4.2	20	74	17	93	36	16	4	41	1.70
38787460--38787504	17	2.8	16	83	12	56	37	2	6	53	1.40
38787493--38787557	25	2.5	26	80	12	64	44	3	3	49	1.33
38789175--38789204	3	10.0	3	100	0	60	33	0	33	33	1.58
38792327--38792387	31	2.0	31	90	0	95	27	8	14	49	1.72
38792329--38792395	31	2.2	31	86	0	89	28	8	11	50	1.69
38793027--38793063	9	4.1	9	92	0	65	45	13	10	29	1.77
38795172--38795289	3	41.0	3	80	13	124	2	30	1	65	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38795662--38795710	24	2.2	21	89	10	71	28	2	0	69	1.00
38796248--38796291	20	2.2	20	100	0	88	34	18	4	43	1.70
38796304--38796360	3	20.0	3	76	20	52	3	28	1	66	1.18
38796733--38796781	24	2.2	21	89	10	71	28	2	0	69	1.00
38797319--38797402	20	4.2	20	74	17	93	36	16	4	41	1.70
38798666--38798710	17	2.8	16	86	10	56	37	2	6	53	1.40
38798666--38798716	15	3.2	15	81	15	50	41	1	5	50	1.37
38800381--38800410	3	10.0	3	100	0	60	33	0	33	33	1.58
38803533--38803593	31	2.0	31	90	0	95	27	8	14	49	1.72
38803535--38803601	31	2.2	31	86	0	89	28	8	11	50	1.69
38804233--38804269	9	4.1	9	92	0	65	45	13	10	29	1.77
38804318--38804378	30	2.0	31	90	3	97	19	40	0	39	1.52
38810767--38811061	127	2.3	127	90	4	445	32	21	21	24	1.98
38810767--38811061	85	3.5	84	90	4	434	32	21	21	24	1.98
38810767--38811061	42	7.0	42	91	3	434	32	21	21	24	1.98
38818941--38819145	102	2.0	102	98	0	392	40	19	10	29	1.85
38820683--38820777	40	2.3	42	84	13	119	23	18	17	40	1.92
38820928--38820960	3	11.3	3	87	6	50	60	0	3	36	1.12
38820967--38820991	13	1.9	13	100	0	50	60	8	0	32	1.26
38824750--38824828	31	2.6	29	80	11	88	55	17	2	24	1.54
38836008--38836046	7	5.3	7	82	11	51	82	0	0	17	0.68
38836008--38836043	12	3.1	12	92	8	65	83	0	0	16	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38836008--38836044	18	2.1	18	90	10	58	83	0	0	16	0.64
38844353--38844409	3	19.0	3	96	0	105	31	0	1	66	1.02
38853799--38853829	12	2.6	12	94	0	53	22	0	6	70	1.09
38860929--38861258	44	7.6	44	70	12	139	28	19	24	27	1.98
38861008--38861130	46	2.8	44	79	10	126	28	17	28	25	1.98
38860919--38861327	218	1.9	218	86	3	581	28	20	22	27	1.99
38861986--38862427	222	2.0	220	93	0	751	20	21	31	26	1.98
38862711--38862741	12	2.6	12	94	0	53	22	0	6	70	1.09
38863318--38863505	98	1.9	98	94	2	333	25	10	26	38	1.88
38868277--38868303	2	13.5	2	100	0	54	51	0	0	48	1.00
38870075--38870102	3	9.3	3	100	0	56	32	0	0	67	0.91
38874667--38874742	32	2.5	31	75	14	77	38	17	1	43	1.57
38875021--38875138	24	4.8	24	69	9	78	34	22	26	16	1.95
38883024--38883650	44	13.6	44	71	12	207	31	18	19	30	1.95
38883065--38883613	95	5.9	95	87	3	754	31	18	19	30	1.95
38883024--38883636	278	2.2	278	86	2	836	32	18	18	30	1.95
38884825--38884922	4	24.8	4	74	13	78	23	8	0	68	1.16
38885165--38885199	3	11.7	3	87	0	52	28	2	2	65	1.21
38885649--38885767	44	2.7	44	88	0	166	30	18	22	28	1.97
38887276--38887373	4	24.8	4	74	13	78	23	8	0	68	1.16
38887616--38887650	3	11.7	3	87	0	52	28	2	2	65	1.21
38892312--38892342	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38894029--38894053	5	5.0	5	100	0	50	60	20	0	20	1.37
38895802--38895842	17	2.5	17	88	11	59	31	0	0	68	0.90
38895800--38895842	15	2.7	16	80	20	54	34	0	0	65	0.93
38900850--38901604	377	2.0	378	99	0	1503	37	12	20	29	1.90
38929082--38930289	100	12.1	100	87	1	1661	32	22	20	23	1.98
38930292--38930517	45	5.1	45	75	6	235	29	23	24	22	1.99
38930292--38930529	89	2.7	89	90	0	377	30	24	23	21	1.99
38930568--38931022	132	3.4	132	93	0	741	30	18	23	27	1.98
38932637--38932693	3	18.7	3	84	10	71	29	1	0	68	1.00
38932925--38933228	107	2.9	106	93	2	495	29	16	19	34	1.94
38934497--38934553	24	2.4	24	87	0	78	14	3	61	21	1.47
38934563--38934618	18	3.1	18	82	5	51	5	8	60	25	1.47
38934569--38934683	24	5.2	23	72	16	64	7	6	60	25	1.47
38934575--38934660	21	4.4	18	71	16	64	9	4	62	23	1.44
38934596--38934696	24	4.2	24	78	5	78	9	5	61	22	1.49
38934676--38934708	12	2.8	12	100	0	66	15	6	60	18	1.54
38934704--38934792	30	3.0	28	86	6	79	6	11	57	24	1.58
38934668--38934740	18	4.1	18	68	7	58	10	6	58	23	1.55
38935545--38935582	19	2.0	19	85	10	51	52	5	2	39	1.38
38935619--38935658	19	2.1	19	86	9	55	72	0	0	27	0.85
38938325--38938360	17	2.1	18	94	5	65	36	16	22	25	1.94
38939598--38939635	18	2.1	18	85	9	51	36	2	2	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38940173--38940235	33	1.9	33	96	3	119	49	3	4	42	1.39
38940377--38940424	22	2.2	22	81	7	53	56	6	0	37	1.25
38940363--38940433	17	3.9	18	74	18	67	54	4	0	40	1.20
38940363--38940433	19	3.9	18	76	18	60	54	4	0	40	1.20
38940498--38940562	29	2.3	29	81	7	71	36	3	10	49	1.53
38941059--38941136	24	3.3	22	74	16	59	29	1	2	66	1.13
38949060--38949971	96	9.7	95	73	11	517	32	15	21	31	1.94
38949060--38949607	45	11.6	45	73	9	315	32	14	21	31	1.93
38949151--38949607	141	3.2	141	87	0	601	33	13	20	32	1.92
38949616--38949715	44	2.3	44	82	0	119	31	16	23	30	1.96
38949823--38950014	44	4.4	44	78	3	147	30	18	21	29	1.97
38950525--38950562	18	2.2	17	90	4	58	78	2	5	13	1.02
38950596--38950629	13	2.5	13	90	4	50	20	5	0	73	1.04
38950620--38950945	162	2.0	163	99	0	645	31	14	22	30	1.94
38951815--38951840	3	8.7	3	100	0	52	30	0	0	69	0.89
38968969--38969002	16	2.1	16	94	0	59	29	11	2	55	1.50
38969104--38969269	42	4.0	42	82	4	176	25	14	25	33	1.94
38969174--38969305	42	3.2	41	83	10	126	28	15	25	31	1.95
38969111--38969289	84	2.1	84	81	6	202	27	14	25	32	1.94
38975800--38975853	16	3.4	16	87	5	74	57	0	24	18	1.40
38988776--38988803	2	14.0	2	100	0	56	50	0	0	50	1.00
38990119--38990297	89	2.0	89	97	0	340	32	24	9	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38993661--38993710	20	2.4	21	86	3	66	14	36	26	24	1.93
38993662--38993710	21	2.4	20	86	3	62	14	36	26	22	1.92
38994154--38994330	87	2.0	87	82	2	212	23	20	17	38	1.93
38999791--38999834	21	2.0	22	83	12	56	29	13	9	47	1.74
39002897--39002958	33	2.0	31	87	9	83	43	11	8	37	1.70
39004497--39004568	3	24.0	3	97	0	135	33	0	1	65	1.02
39004642--39004668	9	3.0	9	100	0	54	44	11	0	44	1.39
39009298--39009322	13	1.9	13	100	0	50	68	24	0	8	1.16
39018120--39018156	16	2.3	16	90	0	56	59	10	16	13	1.61
39019762--39020021	23	11.1	23	77	5	234	42	18	13	25	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131