genome.fa.s9.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  97  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32332974--32333008	18	2.0	18	88	5	54	17	0	5	77	0.96
32333903--32333978	7	10.6	7	74	14	50	5	10	3	80	1.00
32333943--32334014	11	6.4	12	79	17	68	8	6	4	80	1.01
32333963--32334020	22	2.7	21	84	12	73	12	5	5	77	1.09
32346296--32346337	21	2.0	21	86	9	59	64	0	0	35	0.94
32346408--32346471	19	3.3	19	68	12	58	53	1	6	39	1.36
32346390--32346474	39	2.2	37	85	4	116	54	3	4	37	1.39
32348315--32348404	42	2.1	42	87	0	126	24	31	31	13	1.93
32348331--32348413	42	2.0	42	85	0	112	28	25	31	14	1.95
32348461--32348625	42	3.9	42	79	3	170	21	25	35	17	1.95
32349646--32349700	25	2.2	25	83	0	65	9	21	14	54	1.68
32350301--32350349	23	2.1	24	81	7	57	67	2	0	30	1.02
32352616--32352652	15	2.3	17	86	9	51	67	0	21	10	1.21
32358396--32358588	36	5.4	36	74	2	172	33	19	23	23	1.97
32358397--32358625	72	3.2	72	84	0	278	33	19	24	23	1.97
32360025--32360088	27	2.4	27	84	5	85	31	18	21	28	1.97
32365527--32365553	14	1.9	14	100	0	54	22	0	7	70	1.12
32365724--32365810	44	1.9	45	82	13	108	19	14	19	45	1.85
32377205--32378011	44	18.6	43	72	12	399	29	20	22	27	1.98
32377120--32378011	217	4.1	217	93	0	1475	29	20	21	27	1.98
32377644--32377885	130	1.9	127	79	6	272	28	20	21	27	1.97
32377120--32378011	431	2.1	432	92	0	1471	29	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32384718--32384748	13	2.5	13	94	5	55	45	19	0	35	1.51
32396352--32396379	2	14.0	2	100	0	56	50	0	0	50	1.00
32398934--32399001	29	2.3	30	82	12	79	32	13	7	47	1.70
32406447--32406520	28	2.5	31	78	13	91	29	21	8	40	1.82
32407003--32407116	59	1.9	60	85	7	160	44	14	18	21	1.86
32407533--32407577	20	2.3	19	84	3	54	73	2	22	2	1.05
32407550--32407608	21	2.8	21	71	2	55	69	8	20	1	1.23
32408438--32408572	40	3.4	39	75	7	130	23	18	25	31	1.97
32410958--32410992	16	2.1	18	89	10	56	42	2	0	54	1.15
32420156--32420521	126	2.9	125	89	0	552	29	15	23	31	1.95
32423354--32423572	117	1.9	117	88	1	332	42	10	9	38	1.70
32423574--32423632	23	2.6	23	83	0	73	28	0	23	47	1.52
32423600--32423842	29	8.3	29	74	15	216	26	0	26	46	1.59
32423649--32423791	38	3.5	38	67	18	106	25	0	26	47	1.57
32423600--32423842	62	4.2	57	76	16	205	26	0	26	46	1.59
32423693--32423733	13	3.2	13	74	19	50	21	0	26	51	1.48
32423680--32423733	25	2.2	24	90	9	83	24	0	29	46	1.53
32423578--32423856	87	3.2	87	84	6	318	26	0	25	46	1.58
32423781--32423821	13	3.2	13	86	6	57	26	0	21	51	1.48
32423793--32423978	48	4.0	48	74	12	199	25	0	28	46	1.53
32423841--32423869	13	2.2	13	100	0	58	24	0	20	55	1.44
32423854--32423931	35	2.2	35	95	0	138	25	0	29	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32423806--32423974	89	2.0	85	88	6	252	25	0	27	46	1.53
32423972--32424002	13	2.4	13	100	0	62	29	0	25	45	1.54
32424010--32424122	25	4.7	25	74	18	123	44	14	0	40	1.51
32426572--32426705	51	2.6	51	88	3	182	47	0	24	28	1.53
32426657--32426722	10	6.1	11	70	20	50	45	0	30	24	1.53
32426657--32426737	22	3.6	23	80	12	89	43	0	30	25	1.55
32427411--32427481	37	1.9	37	82	5	90	45	2	2	49	1.31
32427613--32427653	17	2.5	17	84	4	57	29	17	4	48	1.67
32439099--32439159	27	2.3	27	88	0	95	27	19	34	18	1.95
32439490--32439551	19	3.3	19	81	4	90	40	9	0	50	1.35
32439498--32439586	18	4.8	18	76	6	88	39	10	0	50	1.36
32439490--32439586	37	2.6	37	91	1	149	40	10	0	49	1.37
32439578--32439629	18	2.8	19	82	8	54	50	0	9	40	1.35
32439598--32439637	19	2.1	19	85	4	53	55	0	10	35	1.34
32440129--32440180	25	2.0	26	88	11	79	53	0	11	34	1.37
32448131--32448180	16	3.2	16	80	2	57	32	4	14	50	1.61
32449405--32450207	401	2.0	401	96	1	1493	32	15	17	33	1.92
32450536--32450633	51	1.9	51	85	4	135	44	3	25	26	1.68
32450595--32450671	11	6.9	11	70	24	63	42	1	29	25	1.63
32450595--32450671	33	2.3	33	80	10	93	42	1	29	25	1.63
32450595--32450671	22	3.5	22	80	16	88	42	1	29	25	1.63
32452405--32452622	105	2.1	106	97	1	411	40	16	4	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32455178--32455236	21	2.7	21	76	16	66	37	6	15	40	1.74
32455190--32455236	23	2.0	24	87	4	69	38	6	17	38	1.75
32461128--32461886	133	5.7	132	81	4	715	27	15	26	30	1.95
32461128--32461752	265	2.4	267	88	1	943	27	15	26	30	1.96
32461128--32461887	89	8.6	89	84	2	710	27	15	26	30	1.95
32461391--32461887	222	2.2	220	89	1	753	28	14	26	30	1.95
32461887--32462194	43	7.0	44	67	6	212	27	30	24	17	1.97
32461891--32462358	88	5.3	87	94	2	758	27	27	25	18	1.98
32462487--32462594	44	2.5	44	81	3	128	28	18	19	33	1.96
32462860--32462934	19	3.8	19	87	6	105	38	9	14	37	1.79
32462861--32462923	21	3.1	21	90	9	112	39	9	12	38	1.76
32462873--32462957	19	4.0	22	77	14	72	38	7	15	38	1.74
32462923--32462967	23	2.0	23	86	4	65	33	4	15	46	1.66
32466612--32466639	12	2.3	12	100	0	56	35	7	0	57	1.26
32470817--32470878	31	2.1	31	87	6	92	33	1	11	53	1.46
32486723--32486810	43	2.0	43	91	0	140	21	9	25	44	1.81
32489184--32489212	2	14.5	2	100	0	58	48	0	0	51	1.00
32492292--32492342	6	8.3	6	97	2	93	49	0	15	35	1.45
32492342--32492377	2	18.0	2	100	0	72	0	0	50	50	1.00
32499884--32499915	2	16.0	2	100	0	64	0	50	0	50	1.00
32502205--32502255	24	2.2	24	86	10	70	60	1	0	37	1.08
32504087--32504297	92	2.3	89	82	6	255	27	24	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32505274--32505317	8	5.4	8	82	12	54	43	0	0	56	0.99
32505271--32505335	8	7.8	8	73	20	53	38	1	0	60	1.07
32505263--32505335	18	4.3	16	77	14	67	35	1	0	63	1.04
32507490--32507535	18	2.6	18	80	13	51	52	0	6	41	1.27
32512519--32512752	116	2.0	116	94	0	405	27	14	22	35	1.94
32520606--32520639	17	2.0	17	88	0	50	32	29	8	29	1.87
32526000--32526040	20	2.0	20	85	0	55	19	19	26	34	1.96
32528636--32528695	30	2.0	30	93	0	102	56	16	3	23	1.55
32530043--32530591	274	2.0	275	99	0	1091	30	17	21	30	1.96
32530915--32530947	14	2.4	14	90	5	50	45	0	0	54	0.99
32532728--32532788	32	1.9	32	83	12	81	44	4	1	49	1.33
32534306--32534427	42	2.9	44	79	13	130	29	29	21	19	1.98
32540174--32540357	44	4.2	44	66	10	124	25	26	19	28	1.99
32540118--32540411	132	2.2	132	91	1	473	23	25	21	29	1.99
32559979--32560897	93	9.9	93	99	0	1829	37	13	19	28	1.90
32561768--32561895	43	3.0	43	75	15	129	30	28	17	23	1.97
32582746--32582786	15	2.7	15	84	0	64	48	12	0	39	1.41
32592843--32592881	14	2.8	13	85	14	51	43	0	2	53	1.14
32595123--32595165	22	2.0	22	85	0	59	48	2	2	46	1.27
32595666--32595732	31	2.3	27	75	18	71	34	4	13	47	1.63
32601301--32601369	31	2.2	32	84	5	86	27	14	14	43	1.84
32602240--32602275	2	18.0	2	100	0	72	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32610943--32610980	18	2.2	18	90	9	62	44	13	0	42	1.43
32611450--32611572	51	2.4	53	83	2	160	27	25	1	45	1.63
32616260--32616284	7	3.6	7	100	0	50	28	0	12	60	1.32
32616935--32616974	18	2.2	18	95	0	71	22	30	7	40	1.81
32617330--32617377	25	1.9	25	100	0	96	45	0	14	39	1.45
32617448--32617500	23	2.3	23	87	3	72	47	30	0	22	1.52
32617829--32618594	23	34.7	23	74	13	564	46	25	1	27	1.60
32617829--32618594	46	17.3	45	77	13	656	46	25	1	27	1.60
32617947--32617984	17	2.2	17	95	0	67	52	15	2	28	1.56
32617847--32618432	157	3.7	155	85	8	684	46	25	1	27	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131