genome.fa.s16.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  100  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31811960--31812058	40	2.5	40	83	0	144	30	23	18	28	1.97
31812362--31812408	24	2.0	24	86	0	67	46	23	0	29	1.52
31816419--31816466	22	2.3	21	85	7	62	27	4	8	60	1.44
31825625--31825667	18	2.3	18	88	4	59	55	0	2	41	1.12
31829993--31830049	26	2.2	26	90	0	87	21	12	29	36	1.90
31833020--31833049	14	2.2	14	94	5	53	33	0	16	50	1.46
31838670--31838698	12	2.4	12	100	0	58	6	24	41	27	1.80
31848492--31848570	27	2.9	27	76	10	81	27	25	17	29	1.98
31849356--31849404	12	4.0	12	78	5	53	75	0	24	0	0.80
31851385--31851415	9	3.3	9	95	4	53	41	0	0	58	0.98
31856820--31857031	27	7.8	27	80	3	201	22	16	19	41	1.89
31856818--31857032	54	4.0	54	79	1	223	22	15	19	42	1.89
31856829--31857031	82	2.5	81	82	5	230	22	16	18	42	1.89
31861886--31862085	43	4.7	42	84	5	226	26	29	20	23	1.99
31861886--31862085	85	2.3	86	84	6	248	26	29	20	23	1.99
31863947--31863978	8	4.2	8	84	15	50	37	34	0	28	1.57
31863927--31863993	22	3.2	22	77	6	59	32	37	2	26	1.72
31863982--31864031	21	2.4	21	86	0	64	34	38	0	28	1.57
31863949--31864063	14	8.1	15	74	17	57	35	34	0	28	1.64
31864238--31864316	7	11.1	7	71	12	54	45	34	0	20	1.51
31864239--31864316	36	2.2	36	82	11	90	46	33	0	20	1.51
31864238--31864364	15	8.9	14	71	14	71	44	33	0	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31864601--31864968	41	9.0	41	91	1	569	30	27	20	21	1.98
31865987--31866020	7	4.9	7	92	7	52	70	0	0	29	0.87
31866006--31866047	21	2.0	22	85	4	59	61	0	0	38	0.96
31866003--31866040	17	2.1	18	85	9	51	63	0	0	36	0.95
31868830--31868865	18	2.1	17	94	5	63	33	0	2	63	1.08
31869523--31869569	10	4.6	10	80	12	51	27	6	4	61	1.39
31878332--31878389	3	19.3	3	96	0	107	0	34	0	65	0.93
31883804--31883882	39	2.0	39	100	0	158	54	15	7	22	1.66
31884982--31885008	7	3.9	7	100	0	54	88	0	0	11	0.50
31885705--31885756	15	3.2	15	73	19	50	44	0	0	55	0.99
31885790--31885826	16	2.3	16	86	13	58	40	0	0	59	0.97
31885838--31885879	20	2.0	22	86	9	61	54	0	0	45	0.99
31886506--31886533	14	2.0	14	100	0	56	50	0	21	28	1.49
31895951--31895992	14	3.1	13	78	21	50	59	4	0	35	1.19
31895959--31895996	16	2.4	16	82	4	51	60	5	0	34	1.19
31896191--31896349	18	8.7	18	70	19	59	59	3	4	33	1.33
31896263--31896339	3	25.7	3	91	0	100	61	2	5	31	1.32
31896263--31896356	12	8.3	11	80	8	57	59	2	5	32	1.32
31897773--31897933	50	3.2	49	75	5	153	26	21	21	30	1.99
31898031--31898153	44	2.8	44	83	2	158	27	23	21	27	1.99
31898549--31898846	120	2.4	125	83	8	360	26	23	18	31	1.97
31900073--31900113	7	5.7	7	88	11	57	12	14	0	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31900064--31900113	15	3.4	15	83	10	59	14	14	0	72	1.14
31900082--31900108	13	2.1	13	100	0	54	14	14	0	70	1.17
31900074--31900113	21	1.9	21	90	10	64	12	15	0	72	1.12
31900972--31901014	8	5.5	8	88	5	52	2	18	0	79	0.85
31900972--31901019	23	2.1	23	84	0	60	4	16	0	79	0.89
31900980--31901014	15	2.2	16	90	5	54	2	14	0	82	0.77
31900980--31901027	23	2.1	23	84	3	62	6	10	0	83	0.81
31900995--31901035	21	2.0	21	85	0	55	9	4	0	85	0.73
31906019--31906060	14	3.1	13	78	21	50	59	4	0	35	1.19
31906027--31906064	16	2.4	16	82	4	51	60	5	0	34	1.19
31906254--31906407	18	8.5	17	71	20	75	61	3	3	32	1.28
31906326--31906384	3	19.7	3	92	0	100	66	3	0	30	1.08
31912137--31912216	38	2.1	38	92	0	133	20	1	46	32	1.58
31913593--31913634	18	2.2	20	87	8	61	30	11	9	47	1.72
31917384--31917481	28	3.5	28	94	0	160	30	25	12	31	1.92
31923005--31923067	30	2.1	30	96	0	117	42	7	26	22	1.81
31926807--31926851	19	2.2	21	88	7	67	24	24	0	51	1.49
31934982--31935014	17	2.0	17	88	5	50	45	0	0	54	0.99
31936255--31936298	18	2.5	17	78	10	52	40	15	0	43	1.47
31938439--31938504	13	5.1	13	86	0	96	30	7	25	36	1.84
31938431--31938504	26	2.9	26	83	2	96	31	8	24	36	1.84
31950905--31951338	44	9.9	44	71	10	203	29	22	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31950977--31951288	87	3.6	85	71	11	265	31	20	17	29	1.96
31951052--31951344	88	3.3	88	72	11	294	31	20	17	29	1.96
31950949--31951349	175	2.3	175	90	0	633	30	21	17	29	1.97
31966090--31966127	17	2.3	17	86	4	51	55	2	0	42	1.14
31984448--31986146	94	18.1	94	84	2	1930	33	18	20	27	1.96
31984686--31986161	44	31.6	44	64	21	277	33	18	20	26	1.96
31985032--31986024	50	21.1	50	64	20	235	33	18	21	26	1.96
31990535--31990571	17	2.2	17	95	0	65	40	10	0	48	1.38
31990816--31990862	24	2.0	23	91	4	76	27	14	10	46	1.78
31997345--31997451	30	3.6	30	81	5	126	19	30	23	26	1.98
32014244--32014633	192	2.0	192	99	0	771	29	18	9	42	1.81
32022974--32023050	29	2.7	29	89	0	118	41	12	23	22	1.88
32023035--32023066	16	2.0	16	100	0	64	50	6	31	12	1.65
32022977--32023124	74	2.0	74	89	0	224	42	10	25	20	1.85
32023006--32023095	45	2.0	45	86	0	126	44	10	26	18	1.81
32023051--32023168	58	2.0	58	95	0	209	38	11	27	22	1.89
32023051--32023157	29	3.7	29	84	0	160	40	10	28	20	1.85
32030373--32030655	154	1.8	150	79	9	320	27	22	14	36	1.92
32031867--32031929	18	3.4	18	78	4	81	55	0	3	41	1.16
32031847--32031932	37	2.3	37	93	0	145	52	0	3	44	1.18
32031860--32031934	37	2.0	37	100	0	150	50	0	5	44	1.24
32043962--32044081	61	2.0	61	80	6	136	52	7	7	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32046934--32046982	20	2.4	21	80	16	59	30	0	2	67	1.02
32047537--32047589	18	2.9	18	80	8	63	32	1	1	64	1.15
32048077--32048116	14	2.9	14	85	10	55	45	37	2	15	1.59
32051123--32051152	10	3.1	10	90	9	53	10	0	16	73	1.09
32051560--32051762	44	4.6	45	80	6	200	30	22	19	27	1.98
32051560--32051764	89	2.3	88	80	6	209	30	22	19	28	1.98
32051803--32052243	50	8.8	49	72	6	357	24	20	22	32	1.98
32051770--32052243	100	4.7	100	86	4	652	24	20	22	32	1.98
32051759--32052243	200	2.4	199	90	2	731	24	20	22	32	1.98
32053023--32053076	16	3.4	16	78	14	58	9	5	1	83	0.88
32053038--32053076	17	2.4	17	86	4	53	10	2	2	84	0.81
32056260--32056298	19	2.0	19	85	5	51	48	15	5	30	1.66
32060658--32060691	10	3.6	10	92	7	54	32	0	0	67	0.91
32063573--32063615	4	10.8	4	100	0	86	51	23	0	25	1.49
32066786--32066813	2	14.0	2	100	0	56	50	0	50	0	1.00
32070535--32070582	7	6.9	7	97	0	69	72	6	6	14	1.24
32070535--32070582	14	3.4	14	94	0	78	72	6	6	14	1.24
32081794--32081900	19	5.8	18	70	18	60	51	3	2	42	1.34
32090720--32090757	20	1.9	20	88	0	58	31	21	0	47	1.51
32090778--32090842	13	4.8	13	81	12	69	35	16	1	46	1.57
32097041--32097082	15	2.7	16	81	7	50	16	11	11	59	1.61
32107919--32108735	44	18.5	44	76	6	638	28	16	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32107913--32108738	133	6.2	133	91	1	1327	28	16	25	30	1.96
32107913--32108738	396	2.1	396	92	1	1359	28	16	25	30	1.96
32117696--32117749	20	2.6	21	76	5	65	35	5	14	44	1.69
32125068--32125096	15	2.0	15	93	6	51	68	0	0	31	0.89
32125385--32125414	15	1.9	16	93	6	53	63	0	0	36	0.95
32132562--32132639	36	2.2	36	92	0	129	17	26	12	42	1.86
32134485--32134518	11	2.8	13	91	8	54	44	11	8	35	1.72
32135687--32135738	26	2.0	26	96	0	95	15	21	34	28	1.94
32135582--32135806	101	2.2	102	92	0	380	21	19	28	30	1.97
32141407--32141526	42	2.8	42	83	5	134	33	25	15	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175