genome.fa.s16.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  117  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36802406--36802545	21	6.5	21	69	12	70	35	18	35	10	1.86
36802869--36803322	42	10.7	43	80	4	386	25	21	24	28	1.99
36802869--36803339	128	3.7	125	78	6	430	24	21	24	28	1.99
36802869--36803339	255	1.8	254	80	7	569	24	21	24	28	1.99
36803570--36803608	21	1.9	20	89	5	60	43	0	2	53	1.14
36805060--36805126	29	2.2	30	81	7	73	32	1	11	53	1.47
36807851--36807900	21	2.3	21	86	10	66	52	0	2	46	1.12
36809304--36809341	20	1.9	20	94	0	67	21	15	7	55	1.66
36809486--36809542	20	3.0	19	72	7	53	33	0	1	64	1.04
36816410--36816448	19	2.0	19	85	5	51	64	5	0	30	1.15
36819811--36819881	6	11.8	6	74	16	51	4	18	1	76	1.03
36819812--36819881	27	2.6	27	78	14	74	4	18	1	75	1.04
36821701--36821891	50	3.8	50	83	1	231	21	29	22	25	1.99
36822228--36822284	30	1.9	29	85	3	78	29	24	3	42	1.71
36823089--36823224	63	2.1	64	83	1	166	30	27	21	21	1.98
36824622--36824651	15	2.0	15	93	0	51	30	13	0	56	1.37
36841254--36841284	15	2.1	15	93	0	53	32	22	12	32	1.92
36844684--36844729	11	4.2	11	85	0	56	15	2	13	69	1.28
36852407--36852505	44	2.2	44	89	3	146	40	0	12	47	1.41
36852419--36852505	44	2.0	45	93	2	149	39	0	12	48	1.41
36852473--36852635	25	6.7	25	74	12	160	44	1	14	40	1.53
36852658--36853340	29	25.2	29	74	18	547	45	27	0	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36852735--36852834	22	4.5	22	72	26	93	48	25	1	26	1.58
36852687--36852907	68	3.1	68	86	7	293	46	26	0	26	1.56
36853067--36853122	21	2.6	22	91	2	96	48	25	0	26	1.52
36853187--36853232	22	2.2	20	88	11	67	45	28	0	26	1.54
36853415--36853652	116	2.1	116	96	0	440	37	10	9	42	1.71
36853628--36853669	17	2.4	18	80	4	50	42	9	2	45	1.49
36856622--36856973	126	2.8	125	92	0	589	32	21	15	29	1.95
36858141--36858332	41	4.6	42	87	7	204	24	28	18	28	1.98
36871195--36871682	69	7.1	69	80	2	417	19	21	22	36	1.95
36871195--36871682	138	3.5	137	79	2	503	19	21	22	36	1.95
36871195--36871682	207	2.4	207	78	3	498	19	21	22	36	1.95
36879911--36879943	4	8.5	4	86	6	50	45	0	0	54	0.99
36884100--36884191	19	4.8	19	91	0	157	35	9	15	39	1.80
36884100--36884216	38	3.0	38	91	5	180	36	8	15	39	1.78
36890424--36890595	88	1.9	88	80	10	199	28	26	22	23	1.99
36890555--36890724	44	3.8	45	85	3	227	29	15	23	31	1.96
36890729--36891040	167	1.9	168	83	0	410	28	18	25	27	1.98
36890731--36891075	167	2.1	168	81	0	395	28	18	25	26	1.98
36891197--36891356	50	3.2	50	66	3	133	32	20	21	26	1.97
36891047--36891456	100	4.1	100	87	1	500	32	20	20	26	1.97
36913906--36914000	45	2.1	45	86	1	129	32	26	5	35	1.79
36913981--36914048	16	4.2	16	96	0	118	35	36	0	27	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36914173--36914197	11	2.3	11	100	0	50	64	8	8	20	1.46
36916547--36916581	16	2.2	16	90	5	54	20	0	14	65	1.26
36919646--36919738	19	4.6	21	89	6	140	35	9	15	39	1.80
36919645--36919746	40	2.6	40	84	9	122	37	8	15	38	1.79
36920223--36920263	6	6.7	6	97	2	73	19	0	0	80	0.71
36920292--36920353	23	2.8	23	78	7	58	33	4	8	53	1.52
36925800--36925976	92	1.9	90	80	6	205	48	14	7	30	1.71
36927061--36927088	14	2.0	14	100	0	56	28	0	28	42	1.56
36931755--36931802	20	2.4	20	100	0	96	18	31	10	39	1.85
36931922--36931999	33	2.4	33	82	0	93	15	38	23	23	1.92
36933384--36933450	29	2.3	29	84	0	80	31	11	22	34	1.90
36938203--36938240	20	1.9	20	94	0	67	21	18	13	47	1.82
36946901--36946941	21	2.0	21	81	18	50	31	19	26	21	1.97
36950734--36950913	39	4.6	39	87	4	229	46	17	2	32	1.63
36954378--36954471	49	1.9	49	97	0	179	25	27	22	24	2.00
36955895--36955936	20	2.2	20	86	4	59	45	11	21	21	1.84
36959939--36959995	23	2.5	23	97	0	105	45	12	7	35	1.69
36959940--36959995	11	4.8	12	80	6	71	46	12	5	35	1.65
36961088--36961119	14	2.3	14	94	0	55	62	0	3	34	1.11
36965289--36965357	36	1.9	36	90	0	111	24	13	30	31	1.93
36975582--36975619	13	3.0	13	82	17	53	39	0	15	44	1.47
36976355--36976399	9	4.7	10	78	15	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36994454--36994617	84	2.0	84	84	7	217	60	9	18	10	1.56
37004490--37004587	41	2.4	41	77	3	108	20	18	27	33	1.96
37009427--37009463	19	1.9	19	88	0	56	43	2	10	43	1.53
37013264--37013304	19	2.2	19	86	0	55	34	4	12	48	1.62
37013342--37013423	41	2.0	41	97	0	155	30	4	15	48	1.66
37014398--37014422	13	1.9	13	100	0	50	32	20	0	48	1.50
37026005--37026162	30	5.3	30	89	3	237	12	29	24	34	1.91
37027058--37027099	20	2.0	22	86	9	61	50	16	11	21	1.77
37053304--37053384	9	8.6	9	72	10	63	40	25	8	24	1.84
37053330--37053366	11	3.5	11	85	14	60	48	24	5	21	1.71
37053302--37053377	20	3.9	20	84	6	102	42	27	6	23	1.79
37053380--37053488	17	6.1	17	69	16	69	49	15	2	32	1.59
37053382--37053532	37	4.0	37	89	5	223	47	15	3	33	1.65
37053382--37053434	20	2.9	18	75	8	54	49	16	1	32	1.57
37053477--37053542	22	3.2	22	69	20	70	46	16	6	30	1.71
37053391--37053527	17	7.4	17	68	19	69	48	15	3	32	1.62
37056263--37056291	11	2.6	11	100	0	58	27	0	0	72	0.85
37056356--37056411	17	3.5	16	92	7	96	55	0	10	33	1.35
37056600--37056635	15	2.4	15	95	0	63	44	0	11	44	1.39
37056615--37056709	42	2.2	43	86	3	129	40	4	15	40	1.67
37056687--37056734	25	1.9	25	100	0	96	35	6	25	33	1.81
37057167--37057199	11	3.0	11	90	0	57	6	0	39	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37070942--37070978	9	4.0	9	86	6	56	83	2	10	2	0.84
37078576--37078628	26	2.0	26	85	0	70	22	24	24	28	2.00
37079379--37079412	8	4.2	8	85	14	52	73	2	0	23	0.97
37081458--37081621	74	2.2	72	82	6	197	35	14	12	36	1.85
37081579--37081900	161	2.0	161	98	0	626	35	17	21	25	1.95
37081839--37082140	148	2.0	148	98	0	586	35	10	27	26	1.89
37084260--37084394	66	2.0	66	91	0	216	42	20	8	28	1.82
37089779--37089851	38	1.9	38	97	0	137	21	2	31	43	1.67
37093188--37093223	13	2.8	13	95	0	63	38	0	22	38	1.54
37100164--37100227	28	2.2	29	86	5	85	65	0	1	32	1.02
37102928--37103009	42	2.0	42	85	4	112	17	20	19	42	1.89
37102983--37103035	21	2.5	21	78	0	61	9	26	24	39	1.86
37104309--37104419	55	2.0	55	98	0	213	45	21	15	18	1.86
37104671--37104802	46	2.9	45	86	2	165	29	23	10	36	1.88
37110979--37111110	46	2.9	45	87	2	165	28	24	10	37	1.88
37117066--37117166	42	2.4	42	83	3	123	12	22	21	42	1.87
37121772--37121907	66	2.1	66	97	0	254	30	7	18	44	1.77
37122490--37122516	14	1.9	14	100	0	54	25	0	0	74	0.83
37122967--37123017	18	2.8	18	80	14	52	21	1	3	72	1.11
37127307--37127734	69	6.2	69	81	2	405	18	20	23	38	1.93
37127306--37127702	207	1.9	207	81	2	483	18	20	22	38	1.94
37127307--37127734	138	3.1	138	84	0	480	18	20	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37132587--37132661	39	1.9	39	83	5	98	14	32	20	33	1.92
37134760--37134822	24	2.6	23	76	16	65	31	6	6	55	1.50
37139587--37139623	11	3.4	11	100	0	74	48	0	0	51	1.00
37139607--37139665	18	3.1	18	77	17	64	32	1	0	66	1.02
37141015--37141060	15	3.1	15	80	0	56	82	6	2	8	0.91
37142617--37142663	15	3.2	15	82	11	53	65	6	4	23	1.33
37152903--37152980	24	3.5	24	67	16	76	42	12	28	16	1.85
37152899--37152983	43	2.0	43	97	0	161	43	11	29	15	1.82
37152924--37153001	24	3.5	24	72	19	78	42	10	33	14	1.79
37159422--37159473	21	2.4	21	87	9	70	51	0	1	46	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175