genome.fa.s16.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  120  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37641984--37642034	27	1.9	26	84	11	68	66	1	19	11	1.33
37642592--37642656	22	2.9	22	77	13	62	46	0	0	53	1.00
37642593--37642665	20	3.5	20	74	16	60	46	0	1	52	1.09
37650594--37650654	28	2.2	28	88	2	97	34	22	19	22	1.97
37651008--37651083	27	2.8	27	76	11	68	22	13	25	39	1.90
37651036--37651162	27	4.7	27	86	5	159	23	14	21	40	1.91
37651018--37651163	54	2.7	53	81	5	159	23	15	20	40	1.90
37654605--37654769	44	3.6	43	70	18	127	30	19	16	33	1.94
37654547--37654771	94	2.4	94	82	1	254	28	19	17	34	1.94
37667959--37667985	14	1.9	14	100	0	54	14	0	3	81	0.82
37670639--37670789	28	5.4	28	92	1	232	26	11	27	33	1.92
37678869--37679016	28	5.3	28	92	1	226	27	11	27	34	1.91
37678894--37679032	28	5.0	27	91	2	109	29	11	25	33	1.91
37682939--37683081	50	2.8	50	81	1	151	21	29	22	26	1.99
37684259--37684283	12	2.1	12	100	0	50	24	36	24	16	1.94
37684443--37684507	9	7.2	9	87	0	67	47	23	7	21	1.76
37684452--37684520	27	2.5	28	81	9	79	47	21	7	23	1.75
37695791--37695840	20	2.5	20	76	0	55	50	0	4	46	1.20
37696308--37696424	29	4.1	28	71	22	93	47	29	0	21	1.56
37696909--37697114	40	5.2	40	84	4	231	22	23	20	33	1.98
37699939--37700100	40	4.1	39	82	3	153	28	21	19	30	1.98
37699960--37700100	40	3.6	39	82	2	156	29	21	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37705097--37705130	12	2.8	12	90	0	50	32	8	0	58	1.29
37709850--37709939	44	2.0	44	100	0	180	26	13	33	26	1.93
37717737--37717788	24	2.2	24	83	10	63	61	11	1	25	1.40
37717733--37717796	25	2.7	24	78	9	69	64	9	1	25	1.33
37720216--37720255	20	2.0	20	85	5	53	37	0	0	62	0.95
37722525--37722584	15	4.0	15	78	8	61	60	6	3	30	1.39
37735014--37735057	22	2.0	23	86	4	63	36	6	13	43	1.71
37737091--37737182	46	2.0	46	100	0	184	19	13	19	47	1.81
37739311--37739364	17	3.3	17	82	5	58	70	1	0	27	0.98
37739466--37739530	31	2.1	31	85	5	87	36	10	13	38	1.80
37739685--37739734	26	2.0	24	84	7	64	48	0	4	48	1.20
37740333--37740365	17	1.9	17	100	0	66	48	0	9	42	1.35
37741525--37741551	2	13.5	2	100	0	54	0	48	0	51	1.00
37750854--37750934	25	3.1	26	77	10	67	24	19	19	35	1.95
37750887--37751092	27	7.4	26	73	12	117	19	16	20	43	1.88
37750908--37751079	89	1.9	89	84	6	233	20	16	20	42	1.89
37756721--37756891	43	4.0	42	81	13	197	22	17	28	31	1.96
37757052--37757083	16	1.9	17	93	6	57	40	0	21	37	1.54
37760780--37760836	24	2.4	23	80	5	69	42	21	19	17	1.90
37769552--37769640	6	14.5	6	85	9	72	74	10	1	14	1.13
37771168--37771223	3	19.7	3	78	7	55	64	1	5	28	1.26
37771373--37771421	5	10.4	5	83	16	61	77	0	0	22	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37771373--37771425	19	2.9	18	82	17	74	77	0	0	22	0.77
37778274--37778408	61	2.2	59	82	8	157	49	2	0	46	1.22
37778395--37778459	33	2.0	33	96	0	121	40	0	1	58	1.07
37781855--37781889	17	2.1	17	100	0	70	65	0	0	34	0.93
37781843--37782312	120	4.0	120	96	1	842	53	3	1	41	1.26
37782122--37782151	15	1.9	16	93	6	53	50	6	0	43	1.28
37782188--37782260	26	2.7	27	81	10	87	58	1	0	39	1.06
37783701--37783804	49	2.1	49	92	0	172	50	10	7	30	1.65
37786191--37786365	41	4.3	40	77	8	156	32	25	20	22	1.98
37789681--37789716	16	2.3	16	95	4	65	72	0	0	27	0.85
37791202--37791348	78	1.9	78	82	0	186	25	15	23	34	1.95
37801303--37801339	14	2.6	15	83	12	51	32	2	8	56	1.43
37812459--37812502	23	1.9	23	100	0	88	40	13	22	22	1.89
37820298--37820354	29	2.0	29	96	0	105	10	40	14	35	1.80
37822124--37822157	16	2.1	16	100	0	68	17	23	8	50	1.74
37822999--37823026	8	3.5	8	100	0	56	50	0	0	50	1.00
37822984--37823038	29	2.0	27	85	7	74	47	0	0	52	1.00
37822998--37823051	19	3.0	19	79	12	53	46	1	0	51	1.11
37823279--37823340	13	4.8	13	80	7	81	37	22	6	33	1.80
37824949--37825066	54	2.2	54	82	8	145	25	25	27	21	1.99
37824933--37825066	52	2.5	52	80	7	155	26	23	27	21	1.99
37835028--37835259	108	2.1	108	81	3	270	30	26	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37835050--37835241	54	3.6	54	86	0	231	29	25	22	22	1.99
37838051--37838232	51	3.6	50	72	8	154	30	26	16	26	1.97
37838046--37838230	101	1.8	101	88	5	284	31	25	16	26	1.97
37844350--37844544	91	2.2	88	82	4	221	35	24	10	29	1.89
37844566--37844672	46	2.3	46	81	12	112	57	0	3	37	1.23
37844621--37844658	19	2.0	20	84	5	51	44	0	5	50	1.24
37844633--37844704	37	1.9	37	82	2	90	59	2	4	33	1.31
37844902--37845008	9	11.3	9	71	18	67	37	2	0	58	1.19
37844885--37844972	29	3.1	28	73	15	81	34	5	2	57	1.34
37844965--37845024	26	2.3	26	82	8	68	38	0	1	60	1.07
37844902--37845016	19	6.2	17	74	14	86	37	2	0	59	1.18
37844902--37845010	10	11.4	10	71	16	79	37	2	0	58	1.19
37851074--37851112	20	2.0	20	94	0	69	23	25	33	17	1.96
37851169--37851219	20	2.6	19	81	6	66	39	15	29	15	1.89
37852360--37852397	20	1.9	20	89	10	60	47	31	5	15	1.68
37853490--37853557	34	2.0	34	82	5	84	26	20	20	32	1.97
37857542--37857578	3	12.3	3	94	0	65	32	2	0	64	1.07
37857944--37857984	21	2.0	21	90	0	64	70	7	12	9	1.33
37859872--37859915	15	3.0	15	86	3	54	70	11	6	11	1.33
37872296--37872337	21	2.0	21	100	0	84	38	4	52	4	1.44
37872541--37872583	13	3.5	13	81	18	65	48	16	0	34	1.46
37872539--37872585	23	2.0	23	100	0	94	46	17	0	36	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37872542--37872590	23	2.2	23	92	3	82	53	12	0	34	1.39
37885960--37886010	17	3.0	17	76	21	61	43	0	0	56	0.99
37885971--37886010	19	2.1	19	85	0	53	45	0	0	55	0.99
37886052--37886082	16	2.0	16	93	6	55	38	0	0	61	0.96
37893888--37893932	18	2.4	18	85	3	63	40	20	0	40	1.52
37894190--37894223	16	2.1	16	88	0	50	61	0	35	2	1.11
37894788--37894862	23	3.3	23	92	0	123	24	17	20	38	1.93
37894788--37894882	46	2.1	44	82	3	109	24	18	20	36	1.95
37894847--37894907	21	2.8	21	82	5	77	19	22	22	34	1.97
37901777--37901841	23	2.8	24	83	4	71	76	10	3	9	1.11
37901776--37901864	30	3.0	30	84	0	115	71	10	5	12	1.28
37904065--37904556	45	11.1	45	71	7	308	27	24	24	23	2.00
37904033--37904556	88	5.9	88	78	3	417	26	24	24	24	2.00
37904065--37904469	133	3.0	133	89	0	614	28	24	23	23	2.00
37904730--37904889	44	3.6	44	76	8	130	30	20	24	25	1.99
37904817--37904900	44	1.9	44	82	4	107	28	17	23	29	1.97
37912307--37912339	8	4.0	8	96	4	57	36	0	0	63	0.95
37917757--37917791	17	1.9	19	88	11	56	45	0	5	48	1.26
37919361--37919413	19	2.5	22	79	14	67	58	0	0	41	0.98
37922010--37922080	26	2.7	25	81	14	72	54	1	1	42	1.17
37922168--37922237	9	8.0	9	73	19	51	35	0	1	62	1.04
37924290--37924399	29	3.8	29	77	9	125	46	10	18	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37924283--37924399	58	2.0	58	86	0	162	47	10	17	24	1.78
37924808--37924876	33	2.1	32	86	2	93	42	2	13	42	1.58
37927116--37927214	41	2.4	41	88	3	137	31	18	20	30	1.96
37933355--37933387	12	2.6	13	85	9	50	24	36	30	9	1.86
37933850--37933919	21	3.5	20	77	12	72	21	4	0	74	0.99
37940365--37940524	50	3.2	50	65	7	117	26	18	19	36	1.94
37940373--37940564	101	1.9	100	83	1	249	25	19	21	33	1.97
37940485--37940637	80	1.9	80	89	0	234	26	19	25	28	1.99
37940569--37940815	100	2.5	100	89	0	377	26	18	21	33	1.96
37940565--37940802	50	4.8	49	67	11	142	26	17	22	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175