genome.fa.s16.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  116  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36476034--36476231	50	3.8	50	82	4	207	29	20	27	22	1.99
36479339--36479386	25	1.9	25	95	0	87	41	16	20	20	1.90
36493624--36493659	15	2.3	15	95	4	63	47	0	2	50	1.15
36494670--36494734	18	3.5	17	80	19	76	13	12	13	60	1.60
36494678--36494733	10	5.7	10	82	18	73	12	14	12	60	1.59
36501025--36501178	76	2.0	76	97	0	290	42	13	9	34	1.77
36506826--36506871	22	2.0	24	83	8	60	26	28	0	45	1.54
36511255--36511324	23	2.9	23	75	10	61	27	21	20	31	1.98
36511791--36511852	30	2.1	30	96	0	115	14	11	20	53	1.72
36518178--36518208	15	2.1	15	100	0	62	41	12	6	38	1.69
36524055--36524316	131	2.0	131	82	7	318	37	24	8	29	1.84
36530328--36530454	44	2.9	43	75	12	125	25	17	26	30	1.97
36533980--36534061	30	2.7	30	81	3	85	29	9	20	40	1.85
36546614--36546652	15	2.6	16	84	15	57	56	0	0	43	0.99
36553047--36553515	235	2.0	235	94	0	823	42	14	11	31	1.81
36557114--36557224	35	3.1	35	82	1	141	41	27	11	18	1.86
36560615--36560746	40	3.5	39	75	22	138	37	2	0	60	1.09
36560614--36560746	70	1.9	72	92	3	225	36	2	0	60	1.09
36560656--36560746	30	3.0	31	88	4	132	39	1	0	59	1.05
36560654--36560746	31	3.0	31	90	6	145	39	1	0	59	1.05
36560665--36560746	11	7.9	11	73	17	77	40	1	0	58	1.06
36565966--36566006	21	2.0	21	81	18	50	31	19	26	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36574394--36574438	23	2.0	23	81	0	54	22	0	15	62	1.33
36574667--36574707	3	13.7	3	94	0	73	31	0	0	68	0.90
36579839--36579871	14	2.3	15	89	5	50	27	12	33	27	1.92
36581222--36581363	43	3.3	43	62	3	104	24	28	28	19	1.98
36581248--36581391	44	3.3	44	65	3	119	22	27	26	23	2.00
36581192--36581413	88	2.5	88	94	0	399	27	27	25	20	1.99
36581425--36581545	44	2.7	43	88	5	163	27	18	26	28	1.98
36581909--36582340	44	10.0	43	71	11	195	31	20	19	28	1.97
36581894--36582371	217	2.2	217	84	5	592	31	20	20	27	1.97
36581894--36582425	217	2.4	216	81	7	567	31	18	20	28	1.97
36582682--36582757	21	3.7	21	94	3	129	38	9	14	38	1.78
36583243--36583275	7	4.7	7	88	11	50	18	0	0	81	0.68
36583237--36583275	13	2.9	14	85	11	55	20	0	0	79	0.73
36584980--36585005	11	2.4	11	100	0	52	61	0	0	38	0.96
36585829--36585915	28	3.2	27	72	15	72	64	2	2	31	1.18
36586167--36586213	20	2.4	20	89	3	69	25	4	4	65	1.29
36586137--36586197	29	2.2	29	88	11	92	27	4	0	67	1.11
36586227--36586281	19	2.8	19	76	13	58	30	0	5	63	1.17
36592660--36592743	37	2.3	37	87	4	125	35	14	13	36	1.85
36595537--36595575	19	2.1	19	85	0	51	51	2	0	46	1.14
36595578--36595625	13	3.8	12	78	10	51	56	0	0	43	0.99
36595572--36595625	26	2.1	25	83	13	65	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36595572--36595610	13	3.0	13	85	11	53	61	0	0	38	0.96
36597884--36597919	15	2.4	16	82	17	51	44	0	0	55	0.99
36600490--36600614	46	2.7	46	80	3	135	24	25	18	31	1.98
36600580--36600797	93	2.3	94	81	7	237	29	22	15	32	1.95
36618400--36618439	19	2.1	19	86	13	55	32	12	10	45	1.75
36644596--36644825	84	2.7	84	82	6	218	42	15	21	20	1.88
36644926--36645262	81	4.2	81	94	0	584	36	21	21	21	1.96
36657347--36657418	24	3.0	23	78	11	74	23	15	30	30	1.95
36657474--36657642	28	6.0	28	75	6	137	32	18	23	25	1.97
36657453--36657627	56	3.1	56	80	1	190	32	16	24	26	1.96
36660605--36660665	23	2.5	24	76	5	61	67	3	8	21	1.32
36673947--36674001	21	2.6	21	77	8	58	9	20	7	63	1.47
36674017--36674071	15	3.7	15	85	7	76	1	25	0	72	0.94
36678907--36678943	19	1.9	19	94	0	65	35	24	21	18	1.96
36681067--36681101	17	2.1	17	89	10	54	71	2	20	5	1.19
36682871--36682946	33	2.3	33	88	2	107	38	5	11	44	1.64
36694357--36694383	4	6.8	4	100	0	54	51	0	0	48	1.00
36698945--36699097	28	5.3	27	66	19	78	52	3	1	42	1.25
36698927--36699184	108	2.3	113	87	9	354	50	4	1	43	1.31
36699140--36699203	32	2.0	32	81	0	74	48	3	0	48	1.17
36700552--36700656	49	2.3	47	80	11	119	55	7	7	29	1.56
36700829--36701166	62	5.4	62	96	1	586	31	10	7	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36701284--36701365	32	2.6	32	96	0	146	39	6	13	41	1.69
36701817--36701863	12	4.2	12	84	10	64	68	12	19	0	1.21
36703889--36703937	16	3.1	16	85	11	73	40	4	34	20	1.71
36704150--36704485	120	2.8	120	96	0	618	49	5	1	44	1.33
36708090--36708142	24	2.2	24	87	12	74	45	0	0	54	0.99
36713805--36713848	19	2.3	19	88	7	63	63	0	4	31	1.14
36713805--36713876	28	2.5	30	80	14	82	63	1	5	29	1.25
36713821--36713865	19	2.4	19	85	7	56	62	2	4	31	1.27
36713739--36713875	10	14.6	9	70	13	64	62	2	5	29	1.28
36714046--36714229	9	20.0	9	70	15	101	32	2	1	63	1.16
36714048--36714230	19	9.9	19	71	16	102	32	2	1	63	1.16
36714048--36714151	38	2.8	39	80	11	119	32	3	2	60	1.29
36714925--36714968	20	2.3	19	84	4	52	22	2	9	65	1.32
36719637--36719694	24	2.3	26	85	8	75	56	34	3	5	1.38
36722812--36722856	22	2.0	22	100	0	90	46	13	17	22	1.83
36728546--36728589	22	2.0	23	82	13	56	50	2	0	47	1.13
36736217--36736423	106	2.0	106	94	0	360	34	15	16	32	1.91
36738257--36738362	56	1.9	56	84	7	146	25	8	17	48	1.76
36741348--36741414	27	2.5	27	95	0	116	31	22	32	13	1.92
36741410--36741746	19	16.8	19	67	23	144	31	0	14	53	1.46
36741484--36741573	21	4.1	21	79	20	112	31	0	13	55	1.38
36741493--36741597	27	4.1	27	89	7	150	33	0	13	53	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36741410--36741764	101	3.5	100	78	13	456	31	0	14	53	1.45
36745796--36745849	24	2.3	24	87	3	74	51	12	5	29	1.63
36745804--36745850	24	2.0	24	95	0	85	51	12	2	34	1.52
36747452--36747525	35	2.1	35	97	0	139	29	6	13	50	1.67
36748777--36748858	29	2.8	29	79	0	83	17	23	14	45	1.85
36748819--36748927	29	3.8	29	81	4	130	21	24	11	42	1.86
36748756--36748927	87	2.0	86	80	5	195	20	25	12	41	1.88
36750939--36751049	19	5.8	19	86	0	159	40	8	12	38	1.73
36750946--36751049	38	2.7	38	93	0	181	41	7	11	39	1.70
36750939--36751075	19	6.9	21	82	7	96	39	7	13	39	1.73
36751570--36751626	30	1.9	29	86	10	80	19	3	1	75	1.04
36751684--36751744	22	2.9	21	77	18	63	31	1	4	62	1.26
36762961--36762990	2	15.0	2	92	0	51	0	46	0	53	1.00
36771739--36771771	15	2.2	15	94	0	57	21	9	27	42	1.83
36773430--36773473	15	3.1	15	77	12	56	27	4	2	65	1.23
36773429--36773476	14	3.4	14	76	21	55	25	4	2	68	1.18
36780163--36780318	33	4.6	33	70	19	108	30	27	22	19	1.98
36783273--36783409	69	2.0	69	92	2	231	27	11	21	38	1.88
36789014--36789044	3	10.3	3	100	0	62	35	32	0	32	1.58
36791187--36791272	40	2.1	40	80	6	93	37	23	18	20	1.94
36791314--36791661	113	3.1	111	82	7	423	27	24	21	26	1.99
36791765--36791866	41	2.5	42	82	3	118	19	23	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36793965--36793995	16	1.9	16	93	0	53	35	25	6	32	1.82
36795039--36795072	2	16.5	2	87	6	50	50	2	0	47	1.16
36796558--36796615	9	6.6	9	75	18	50	50	20	0	29	1.49
36796564--36796628	13	5.3	13	74	17	59	47	21	0	30	1.51
36796710--36796770	19	3.4	19	70	21	67	50	19	0	29	1.48
36796726--36796786	16	3.6	16	70	20	52	50	21	0	27	1.49
36796720--36796780	19	3.4	19	70	21	67	50	19	0	29	1.48
36796543--36796787	35	6.8	35	70	20	175	45	18	1	34	1.58
36796761--36796888	60	2.2	59	89	1	193	46	17	3	33	1.64
36802355--36802532	87	2.0	87	88	4	261	38	17	30	12	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175