genome.fa.s16.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  147  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44843065--44843122	5	11.2	5	85	5	62	0	50	41	8	1.33
44843064--44843121	21	2.8	21	92	5	91	0	50	39	10	1.37
44845055--44845093	19	2.1	19	90	0	60	33	2	2	61	1.23
44845055--44845095	21	2.0	21	85	0	55	31	2	2	63	1.20
44845637--44845834	99	2.0	98	95	1	351	28	9	24	37	1.87
44846330--44846447	10	12.5	10	66	23	51	57	1	5	35	1.31
44847736--44847881	75	2.1	68	87	11	206	40	4	8	45	1.56
44847817--44847855	16	2.4	16	91	0	60	35	0	7	56	1.28
44848092--44848137	19	2.4	19	88	0	65	65	6	6	21	1.39
44848104--44848152	13	3.8	13	81	5	55	67	10	2	20	1.30
44848255--44848287	16	2.1	16	100	0	66	69	12	0	18	1.18
44849752--44849966	102	2.0	103	84	6	279	31	14	14	39	1.87
44854455--44854507	21	2.5	21	82	11	56	32	9	0	58	1.30
44857455--44857621	43	3.9	43	81	3	165	28	25	21	24	1.99
44858001--44858072	21	3.4	21	96	0	126	1	48	18	31	1.56
44863552--44863797	9	27.9	9	77	10	249	32	1	19	47	1.57
44863545--44863627	25	3.2	27	89	5	111	28	1	21	48	1.58
44863582--44863796	95	2.2	95	81	4	243	32	0	19	46	1.56
44863807--44863907	20	5.2	20	74	11	102	40	4	6	47	1.52
44863787--44863947	57	2.8	57	92	0	268	39	5	8	46	1.57
44864016--44864114	20	5.2	20	69	16	84	40	5	7	47	1.53
44863984--44864153	57	3.0	56	91	3	270	39	5	8	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44863984--44864140	55	2.8	55	93	1	242	40	5	8	46	1.56
44863997--44864198	112	1.8	112	83	2	271	41	4	9	44	1.58
44863788--44864250	206	2.2	209	98	1	896	41	4	9	44	1.59
44866586--44866646	7	8.7	7	74	0	50	45	31	1	21	1.61
44866579--44866618	21	1.9	21	89	0	62	47	25	0	27	1.52
44866586--44866646	28	2.2	28	85	5	79	45	31	1	21	1.61
44867295--44867475	93	1.9	93	86	2	256	22	17	20	39	1.92
44867185--44867589	207	2.0	206	86	1	560	23	18	20	37	1.94
44867384--44867759	114	3.3	114	87	1	506	22	19	19	38	1.94
44867387--44867800	227	1.8	227	80	6	507	23	19	19	37	1.94
44869772--44869824	23	2.3	23	84	12	65	37	1	0	60	1.08
44872011--44872053	16	2.5	17	77	7	52	30	9	9	51	1.65
44874122--44874160	19	2.1	19	85	9	53	76	7	0	15	0.99
44874377--44874421	24	1.9	23	86	4	63	15	0	13	71	1.15
44874630--44874705	40	1.9	40	83	5	100	35	5	7	51	1.54
44878150--44878183	12	2.8	12	90	0	50	0	29	44	26	1.55
44879821--44880361	154	3.5	152	83	8	720	29	11	7	51	1.66
44880729--44880773	15	2.9	15	86	6	54	0	24	0	75	0.80
44886352--44886402	24	2.1	24	100	0	102	23	25	13	37	1.92
44886597--44886872	138	2.0	138	97	0	525	35	11	25	27	1.90
44888359--44888398	20	2.0	20	90	0	62	27	10	12	50	1.72
44888344--44888410	34	1.9	35	87	3	100	32	8	11	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44889347--44889411	32	2.1	32	91	2	105	47	12	9	30	1.72
44894972--44895004	13	2.4	14	90	5	50	0	15	3	81	0.80
44897982--44898020	19	2.1	19	85	0	51	12	10	20	56	1.65
44898161--44898212	26	2.1	24	85	7	68	28	3	25	42	1.72
44898383--44898416	17	1.9	18	88	5	52	47	0	0	52	1.00
44898595--44898630	18	2.0	18	88	0	54	36	8	8	47	1.64
44900291--44900361	19	3.9	17	83	10	70	32	0	4	63	1.14
44900318--44900367	10	5.2	10	77	15	52	30	0	2	68	1.01
44906147--44906179	17	1.9	17	88	11	50	45	0	0	54	0.99
44906358--44906393	18	2.0	18	88	0	54	36	8	8	47	1.64
44913114--44913216	41	2.5	41	91	0	170	35	22	17	24	1.95
44913332--44913512	64	2.9	63	88	8	246	41	17	7	33	1.78
44913581--44913624	20	2.1	21	84	12	56	38	13	2	45	1.56
44914577--44914633	28	2.0	28	90	6	89	38	5	0	56	1.22
44925340--44925543	41	5.0	41	90	0	318	25	26	18	29	1.98
44925334--44925550	82	2.7	83	94	2	377	24	26	18	29	1.98
44929055--44929130	7	11.0	7	72	13	50	46	13	0	40	1.43
44929030--44929129	49	2.0	49	98	0	191	49	13	0	38	1.42
44929055--44929130	13	5.5	14	65	13	50	46	13	0	40	1.43
44933865--44933898	7	5.0	7	92	7	61	44	11	0	44	1.40
44937457--44937513	26	2.2	26	100	0	114	33	26	3	36	1.74
44938740--44938795	28	2.0	29	86	6	80	32	1	3	62	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44940636--44940864	50	4.5	50	86	7	291	22	30	21	25	1.99
44946907--44946974	28	2.4	28	82	0	91	22	17	25	35	1.95
44946908--44946995	28	3.1	28	81	0	77	22	19	22	35	1.96
44947374--44947407	15	2.3	15	94	0	59	70	0	8	20	1.13
44950240--44950278	17	2.2	18	90	4	62	0	33	5	61	1.18
44950237--44950282	18	2.5	19	82	10	69	0	30	6	63	1.20
44957834--44957881	2	24.0	2	100	0	96	0	50	0	50	1.00
44959464--44959500	4	9.2	4	100	0	74	27	48	0	24	1.51
44960723--44960773	9	5.7	9	85	0	75	27	11	17	43	1.84
44965808--44965890	16	5.2	16	68	14	57	49	1	2	46	1.22
44967480--44967514	8	4.2	8	92	7	61	48	17	0	34	1.47
44967479--44967512	17	2.0	17	100	0	68	47	17	0	35	1.48
44968250--44968479	69	3.2	69	72	10	212	29	9	3	58	1.44
44968807--44968854	25	1.9	25	82	0	60	10	22	16	50	1.76
44981728--44981823	21	4.5	21	77	11	81	45	29	1	23	1.60
44981730--44981810	22	3.7	21	72	16	60	49	28	1	20	1.57
44981730--44982728	43	23.5	44	71	15	470	45	31	0	22	1.57
44981771--44981866	50	1.9	50	82	4	122	47	32	1	18	1.56
44981878--44981947	36	1.9	36	82	0	86	47	35	1	15	1.55
44981903--44981969	22	3.1	22	78	2	64	46	35	0	17	1.49
44981874--44982024	58	2.6	58	88	4	227	47	35	0	16	1.52
44981830--44982729	21	42.8	20	70	16	300	45	32	0	22	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44982037--44982213	94	1.9	94	84	6	243	43	31	0	25	1.55
44982415--44982508	35	2.7	36	75	9	95	45	30	0	23	1.53
44981987--44982724	21	34.5	22	71	14	363	44	31	0	23	1.57
44982130--44982677	7	77.6	7	63	18	59	44	31	0	23	1.59
44982485--44982729	106	2.3	105	83	4	305	45	32	0	21	1.55
44982705--44982734	14	2.1	15	93	6	53	56	26	0	16	1.40
44985891--44986255	125	2.9	124	85	3	484	30	21	16	31	1.95
44986610--44986667	20	3.0	20	82	2	55	32	1	10	55	1.44
44989910--44990573	153	4.4	153	87	5	945	51	8	9	30	1.63
44993563--44993603	19	2.2	19	95	0	73	46	14	24	14	1.82
44994017--44994195	89	2.0	89	95	0	322	40	25	8	25	1.84
44994789--44994901	57	1.9	58	96	3	210	41	17	15	24	1.89
44996809--44996839	12	2.6	12	89	0	53	70	0	3	25	1.02
44997673--44997754	42	2.0	42	85	0	110	48	10	15	24	1.77
44998032--44998074	20	2.0	22	86	8	63	44	11	6	37	1.68
44998800--44998825	2	13.0	2	100	0	52	50	0	50	0	1.00
45002870--45002922	24	2.2	24	89	0	79	33	1	9	54	1.43
45003174--45003243	34	2.1	34	100	0	140	20	17	2	60	1.49
45004257--45004292	17	2.1	17	89	0	54	47	11	8	33	1.69
45004832--45004884	24	2.2	24	89	0	79	33	1	9	54	1.43
45023544--45023602	24	2.4	25	83	8	77	28	0	0	71	0.87
45024954--45025146	34	5.6	33	79	8	163	34	19	16	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45025002--45025146	67	2.2	67	80	5	159	36	17	15	31	1.90
45025431--45025496	17	3.7	17	72	21	55	28	1	3	66	1.15
45025885--45025930	23	2.0	23	91	0	74	30	13	4	52	1.59
45026325--45026370	9	5.1	9	83	0	56	58	2	0	39	1.10
45029173--45029206	17	2.0	17	88	0	50	52	14	11	20	1.73
45037178--45037233	30	1.9	28	85	7	76	41	3	25	30	1.72
45037572--45037764	50	3.8	50	86	3	271	25	22	30	20	1.98
45042372--45042416	23	2.0	22	83	12	56	28	6	6	57	1.50
45046130--45046188	11	5.3	11	74	11	57	66	3	0	30	1.08
45046130--45046158	12	2.5	12	94	5	51	68	0	0	31	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175