genome.fa.s16.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  163  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49034385--49034497	54	2.1	54	85	6	149	51	1	1	45	1.22
49037672--49037707	16	2.2	16	100	0	72	25	0	36	38	1.56
49037688--49037778	45	2.0	45	85	2	121	27	6	28	37	1.82
49037943--49037979	19	2.0	19	85	15	51	54	0	0	45	1.00
49038021--49038206	59	3.1	58	69	19	157	51	3	2	42	1.34
49037923--49038212	120	2.4	120	89	3	456	49	4	2	43	1.35
49040216--49040283	17	4.2	17	74	22	67	57	1	0	41	1.08
49040209--49040248	14	2.9	15	82	14	50	52	0	0	47	1.00
49040215--49040281	16	4.3	15	71	25	50	56	1	0	41	1.08
49043021--49043049	14	2.0	15	93	6	51	37	6	0	55	1.27
49044201--49044251	27	2.0	27	88	11	81	27	15	56	0	1.39
49046748--49047050	153	2.0	150	91	3	491	41	14	16	26	1.87
49049350--49049392	21	2.0	21	95	0	77	27	0	37	34	1.57
49049373--49049405	16	2.1	16	94	0	57	33	0	36	30	1.58
49049384--49049478	45	2.1	44	86	1	127	35	5	26	32	1.79
49049611--49049645	18	2.0	17	88	5	52	54	0	0	45	0.99
49049569--49049641	27	2.7	27	76	8	76	52	2	0	45	1.15
49049637--49049864	77	3.1	77	66	25	227	46	3	5	45	1.43
49049755--49049789	18	2.0	17	88	5	52	54	0	0	45	0.99
49049564--49049945	144	2.7	144	99	0	746	47	3	3	45	1.36
49049899--49049933	18	2.0	17	88	5	52	54	0	0	45	0.99
49057092--49057122	4	7.8	4	92	0	53	45	3	0	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49057542--49057599	30	1.9	31	82	10	75	55	5	1	37	1.33
49057913--49057953	21	2.0	21	85	9	57	31	2	0	65	1.05
49064113--49064159	23	2.1	22	84	4	58	63	10	2	23	1.37
49066375--49066407	16	2.1	16	100	0	66	42	6	0	51	1.26
49066520--49066555	18	1.9	18	88	5	54	30	0	0	69	0.89
49066963--49067006	23	2.0	23	86	4	63	18	11	11	59	1.61
49067921--49067965	23	2.0	23	82	8	56	40	8	2	48	1.47
49070750--49070802	27	1.9	28	84	3	72	54	5	5	33	1.47
49073012--49073071	26	2.3	26	91	5	95	41	11	11	35	1.78
49073946--49074003	28	2.0	29	86	3	82	55	5	5	34	1.45
49080257--49080284	7	4.0	7	100	0	56	57	0	0	42	0.99
49083295--49083376	43	2.0	42	90	4	130	37	17	13	31	1.88
49085834--49085868	16	2.1	17	89	5	54	60	11	5	22	1.52
49085919--49086105	93	2.0	93	100	0	374	48	11	7	32	1.68
49087518--49087700	91	2.0	91	98	0	357	39	7	22	29	1.82
49102120--49102150	4	7.8	4	100	0	62	77	0	22	0	0.77
49108633--49108657	12	2.1	12	100	0	50	24	36	24	16	1.94
49108823--49108891	9	7.7	9	83	0	84	43	21	7	27	1.79
49108823--49108891	27	2.6	27	83	0	93	43	21	7	27	1.79
49108996--49109039	18	2.4	18	88	0	61	13	2	43	40	1.57
49110270--49110312	13	3.3	13	80	0	50	32	2	13	51	1.54
49115597--49115621	12	2.1	12	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49125411--49125441	6	5.2	6	96	0	53	35	32	19	12	1.90
49132861--49132901	2	21.5	2	81	18	52	48	2	0	48	1.14
49134066--49134200	64	2.1	64	84	4	173	35	5	15	43	1.69
49142613--49142640	14	2.0	14	100	0	56	35	14	14	35	1.86
49150689--49150733	22	2.0	22	100	0	90	64	13	13	8	1.49
49153937--49154008	31	2.4	30	79	4	81	36	12	11	40	1.79
49175181--49175213	16	2.1	16	88	11	50	36	18	9	36	1.82
49179674--49179725	23	2.3	23	100	0	104	34	26	21	17	1.95
49181057--49181089	17	1.9	17	93	0	57	24	0	15	60	1.35
49181654--49181697	22	1.9	22	86	9	61	43	0	9	47	1.35
49182315--49182450	46	2.9	47	92	3	231	36	8	26	27	1.86
49185075--49185219	69	2.1	69	79	6	150	42	20	13	22	1.87
49188456--49188666	92	2.3	92	90	1	325	35	19	16	28	1.93
49188456--49188694	92	2.6	92	87	1	273	35	20	15	28	1.93
49194263--49194314	4	13.0	4	81	0	50	26	7	23	42	1.81
49194267--49194313	24	2.0	24	86	0	67	27	8	21	42	1.81
49195184--49195260	31	2.4	30	72	10	73	29	11	10	48	1.73
49195241--49195276	16	2.2	16	95	0	63	38	2	5	52	1.39
49200722--49200776	3	18.3	3	88	0	65	58	0	5	36	1.21
49206672--49206696	2	12.5	2	100	0	50	48	0	0	52	1.00
49214432--49214460	3	9.7	3	100	0	58	68	0	0	31	0.89
49217283--49217366	29	2.9	29	98	0	159	50	20	11	17	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49228691--49228725	18	2.0	17	88	5	52	45	0	0	54	0.99
49228471--49228748	116	2.4	117	86	5	395	44	2	5	48	1.36
49228882--49228971	43	2.0	45	82	4	112	37	28	6	26	1.82
49228952--49228986	16	2.3	15	95	5	61	37	37	0	25	1.57
49232064--49232110	16	3.0	16	77	22	55	42	0	0	57	0.98
49232045--49232153	41	2.8	42	83	10	117	43	1	1	53	1.22
49232240--49232278	16	2.4	16	86	0	60	58	0	0	41	0.98
49235590--49235624	15	2.2	16	95	5	63	25	0	37	37	1.57
49236041--49236086	23	2.0	24	87	12	69	56	4	2	36	1.31
49236050--49236095	23	2.0	23	83	8	58	58	2	2	36	1.22
49235828--49236102	113	2.4	113	82	10	346	51	5	2	41	1.36
49238048--49238100	22	2.5	20	77	17	54	62	1	0	35	1.06
49241875--49241923	26	2.0	26	88	11	77	28	16	55	0	1.42
49244359--49244661	153	2.0	150	91	3	491	41	14	16	26	1.87
49246951--49246993	21	2.0	21	95	0	77	27	0	37	34	1.57
49246974--49247006	16	2.1	16	94	0	57	33	0	36	30	1.58
49246985--49247079	45	2.1	44	86	1	127	35	5	26	32	1.79
49247212--49247246	18	2.0	17	88	5	52	54	0	0	45	0.99
49247170--49247242	27	2.7	27	76	8	76	52	2	0	45	1.15
49247238--49247465	77	3.1	77	66	25	227	46	3	5	45	1.43
49247356--49247390	18	2.0	17	88	5	52	54	0	0	45	0.99
49247165--49247546	144	2.7	144	99	0	746	47	3	3	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49247500--49247534	18	2.0	17	88	5	52	54	0	0	45	0.99
49254735--49254765	4	7.8	4	92	0	53	45	3	0	51	1.17
49255190--49255241	16	3.0	18	72	11	63	57	7	0	34	1.27
49255190--49255260	34	2.1	34	86	5	99	56	7	1	35	1.35
49255594--49255634	21	2.0	21	85	9	57	31	2	0	65	1.05
49259949--49259981	11	3.1	11	91	4	50	30	0	0	69	0.88
49273019--49273049	16	2.0	16	93	6	55	70	6	6	16	1.29
49273038--49273074	18	2.1	18	90	5	58	64	2	0	32	1.07
49273098--49273172	22	3.2	23	86	7	107	89	0	1	9	0.55
49273100--49273155	1	56.0	1	92	0	94	96	0	0	3	0.22
49274848--49275724	44	20.2	44	75	8	751	29	26	16	27	1.97
49274837--49275725	131	6.8	132	92	1	1397	29	26	16	27	1.97
49288923--49289005	42	2.0	43	92	2	141	59	3	15	21	1.52
49293920--49293975	29	1.9	29	96	0	103	51	21	8	17	1.72
49294067--49294118	24	2.2	24	85	0	68	50	7	3	38	1.50
49294389--49294456	31	2.2	31	86	5	93	38	13	8	39	1.75
49296524--49296568	20	2.2	20	84	7	56	51	6	11	31	1.63
49296940--49297007	32	2.2	32	97	2	129	23	8	16	51	1.72
49301505--49301590	45	1.9	45	97	0	163	29	23	11	36	1.90
49306896--49306946	22	2.4	20	78	18	50	60	5	1	31	1.31
49309425--49309484	30	2.0	30	93	0	102	55	15	5	25	1.60
49310535--49310589	26	2.1	27	83	16	71	34	0	3	61	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49310534--49310592	27	2.2	27	80	20	70	35	0	3	61	1.13
49310733--49310773	20	2.0	20	95	0	73	9	43	14	31	1.78
49312131--49312378	50	4.9	49	76	7	196	23	27	20	27	1.99
49313626--49313688	13	5.0	13	75	16	53	71	0	26	1	0.95
49313857--49313975	60	2.0	60	91	0	193	33	0	12	53	1.39
49319775--49319808	13	2.5	14	85	9	52	0	20	2	76	0.92
49319938--49320024	27	3.2	27	83	0	111	20	28	25	25	1.99
49320461--49320516	21	2.7	21	91	0	94	25	8	37	28	1.86
49320685--49320810	30	4.2	29	89	4	180	35	10	2	51	1.49
49320834--49320992	58	2.7	59	80	9	166	13	50	3	32	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175