genome.fa.s16.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  149  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45312331--45312362	13	2.4	14	85	15	50	21	3	0	75	0.95
45312528--45312582	22	2.5	21	82	5	56	25	45	9	20	1.80
45313695--45313736	17	2.4	18	76	19	52	73	2	0	23	0.94
45313699--45313734	16	2.2	17	90	5	56	72	2	0	25	0.98
45314315--45314349	15	2.4	15	90	4	54	48	0	8	42	1.33
45317668--45317792	43	2.9	43	79	0	133	20	17	28	32	1.96
45320758--45320817	25	2.4	25	88	0	84	36	5	21	36	1.76
45327544--45327792	32	8.0	32	75	5	172	34	9	14	41	1.78
45327628--45327771	64	2.2	64	91	0	234	34	12	15	37	1.86
45327931--45328016	41	2.1	41	97	0	163	29	16	23	31	1.96
45327931--45328029	41	2.4	41	93	0	153	27	17	25	30	1.97
45328813--45328845	17	2.0	17	88	5	50	33	0	21	45	1.52
45336201--45336333	40	3.5	40	75	10	141	33	21	24	21	1.97
45336162--45336333	75	2.3	75	88	2	247	31	21	25	21	1.98
45336163--45336304	35	3.9	35	76	12	117	32	23	25	19	1.97
45336162--45336379	75	2.9	76	79	4	199	32	22	24	21	1.98
45336708--45336787	35	2.3	35	97	0	151	37	11	32	18	1.87
45339501--45339563	18	3.6	18	72	10	58	52	7	3	36	1.47
45339647--45339716	29	2.4	27	79	13	70	71	1	4	22	1.12
45339798--45339829	15	2.1	16	94	5	57	84	3	0	12	0.74
45339917--45339953	18	2.1	18	94	0	65	70	2	5	21	1.20
45341392--45341448	26	2.3	24	78	6	60	22	1	17	57	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45342219--45342261	23	1.9	22	81	13	52	51	9	0	39	1.34
45342748--45342797	19	2.6	20	84	12	61	34	2	8	56	1.40
45349945--45350005	30	2.0	31	90	6	97	31	4	3	60	1.34
45350002--45350060	26	2.3	26	80	5	68	44	3	1	50	1.28
45350027--45350078	23	2.3	23	83	12	63	36	0	7	55	1.29
45352911--45352973	23	2.8	22	75	13	58	1	12	28	57	1.45
45353190--45353234	21	2.1	21	87	0	63	22	8	15	53	1.69
45353586--45353699	44	2.6	44	77	2	122	25	25	21	28	1.99
45353858--45354275	87	4.8	87	92	0	703	25	23	22	28	1.99
45354080--45354216	43	3.2	43	64	17	102	24	22	24	29	1.99
45355503--45355540	7	5.3	7	82	17	51	13	13	0	73	1.09
45355503--45355545	22	1.9	22	90	4	68	11	18	0	69	1.17
45355503--45355534	15	2.1	16	94	5	57	12	12	0	75	1.06
45355920--45355985	12	5.8	12	72	18	52	7	7	7	77	1.13
45355952--45355985	12	2.8	12	95	0	59	11	2	5	79	1.02
45355892--45355995	32	3.3	32	76	9	99	9	7	8	74	1.24
45357334--45357426	39	2.5	37	80	7	98	27	29	22	20	1.98
45357595--45357640	23	2.0	24	82	4	58	32	26	0	41	1.56
45357780--45357838	3	19.7	3	92	0	100	64	1	1	32	1.13
45358098--45358144	22	2.0	23	84	12	60	29	27	0	42	1.56
45358543--45358580	17	2.2	18	90	4	60	5	13	5	76	1.13
45358596--45358627	16	1.9	17	93	6	57	53	3	0	43	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45358592--45358653	25	2.5	25	79	7	72	50	3	0	46	1.17
45358746--45358797	14	3.6	14	80	14	61	55	1	0	42	1.10
45363556--45363975	208	2.0	209	99	0	824	52	8	15	24	1.70
45364495--45364535	13	3.1	13	82	6	55	73	4	19	2	1.13
45372662--45372704	21	2.0	21	95	0	77	27	27	20	23	1.99
45376122--45376217	50	1.9	51	84	2	131	26	23	20	29	1.99
45376395--45376527	58	2.3	58	85	2	178	20	27	26	26	1.99
45379134--45379182	24	2.0	25	84	4	64	32	22	24	20	1.98
45384799--45384856	13	4.5	13	91	0	98	39	27	10	22	1.86
45385019--45385102	26	3.3	26	67	9	82	23	1	13	61	1.38
45385026--45385132	51	2.1	51	100	0	214	23	1	14	60	1.43
45385043--45385124	27	3.1	27	68	10	89	25	1	12	60	1.39
45390703--45390780	39	2.0	39	100	0	156	33	20	12	33	1.91
45391529--45391570	16	2.8	16	78	7	52	38	21	0	40	1.53
45396780--45396819	14	2.9	14	84	0	53	32	7	17	42	1.77
45396803--45396842	20	2.0	20	90	0	62	27	10	12	50	1.72
45396788--45396854	34	1.9	35	90	3	109	31	8	13	46	1.74
45396782--45396858	14	5.0	15	71	20	52	32	9	15	42	1.78
45411985--45412060	31	2.5	31	77	0	80	32	10	10	46	1.73
45414681--45414708	14	2.0	14	100	0	56	57	0	0	42	0.99
45429511--45429775	103	2.6	104	90	3	408	29	29	20	20	1.98
45436305--45436569	103	2.6	104	90	3	417	29	29	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45443802--45443839	16	2.4	16	86	4	51	2	15	2	78	0.97
45449379--45449730	125	2.8	125	86	2	501	30	15	21	32	1.94
45451889--45452115	116	2.0	116	92	0	382	41	9	9	38	1.71
45452114--45452689	23	23.6	23	70	20	343	26	1	26	46	1.59
45452136--45452248	28	4.1	29	81	13	123	25	2	27	44	1.67
45452281--45452324	21	2.1	21	87	4	63	20	0	31	47	1.50
45452286--45452314	14	2.0	15	93	6	51	17	0	34	48	1.47
45452365--45452395	7	4.3	7	95	4	53	12	0	38	48	1.42
45452162--45452501	74	4.6	74	86	7	428	27	0	26	45	1.59
45452387--45452647	96	2.7	94	84	9	348	26	0	25	47	1.58
45452582--45452687	53	2.0	53	84	0	140	23	0	26	49	1.57
45452695--45452781	44	2.0	45	84	6	115	47	11	2	39	1.53
45453871--45453909	7	5.6	7	100	0	78	58	12	0	28	1.34
45455050--45455170	51	2.4	51	92	1	199	44	0	26	28	1.60
45455137--45455192	22	2.5	22	94	2	94	42	0	32	25	1.55
45455153--45455199	11	4.2	11	77	22	53	46	0	34	19	1.50
45455866--45455930	29	2.2	29	83	2	76	29	6	1	63	1.28
45457381--45457433	16	3.3	16	91	0	88	39	5	32	22	1.78
45457413--45457509	44	2.2	44	84	1	131	31	4	26	37	1.76
45457618--45457678	18	3.3	18	84	9	79	60	1	1	36	1.16
45461495--45461524	14	2.1	14	100	0	60	20	6	13	60	1.55
45461637--45461962	90	3.6	90	87	0	465	26	6	15	51	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45465037--45465103	25	2.7	25	83	4	82	32	20	26	19	1.97
45465191--45465238	25	1.9	25	95	0	87	41	18	20	18	1.90
45466291--45466323	17	1.9	17	88	11	50	30	12	12	45	1.78
45467507--45467574	23	3.0	22	80	6	75	17	20	0	61	1.34
45467520--45467752	5	43.4	5	69	21	66	25	15	0	57	1.44
45467523--45467574	11	4.6	11	81	13	61	19	23	0	57	1.40
45467520--45467573	28	1.9	28	88	7	83	16	22	0	61	1.35
45467570--45467626	18	3.1	18	80	14	62	24	10	0	64	1.24
45467515--45467622	23	4.9	21	69	13	74	21	15	0	62	1.32
45467732--45467782	14	3.1	17	78	18	54	25	13	0	60	1.33
45467899--45467941	21	2.0	21	82	8	52	32	6	0	60	1.23
45468284--45468846	114	4.9	112	75	10	421	30	18	23	26	1.98
45468515--45468805	113	2.6	112	78	11	281	29	18	22	29	1.97
45469359--45469510	81	1.9	82	80	6	184	28	3	22	45	1.70
45472169--45472205	10	3.7	10	92	0	56	43	0	0	56	0.99
45472248--45472280	16	2.1	16	94	0	57	27	12	9	51	1.69
45472345--45472483	67	2.1	67	95	2	253	36	5	12	45	1.65
45472618--45472686	34	2.0	36	82	5	88	39	7	4	49	1.50
45472717--45472765	13	3.8	12	82	15	53	44	10	2	42	1.49
45473013--45473214	16	12.1	16	63	26	64	47	18	2	31	1.62
45473106--45473343	9	27.4	9	70	15	146	45	21	2	30	1.64
45473149--45473287	34	4.1	34	73	17	99	46	23	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45473137--45473308	94	1.8	93	80	7	204	45	22	1	29	1.62
45473255--45473359	51	2.1	50	83	5	131	44	20	2	31	1.66
45479224--45479468	42	5.8	42	92	1	402	22	21	21	34	1.97
45479509--45479553	22	2.0	22	91	0	72	40	26	22	11	1.87
45479620--45479809	47	4.0	47	91	3	292	23	12	1	63	1.34
45479620--45479815	96	2.0	96	91	3	315	22	12	1	63	1.34
45479618--45479799	21	7.9	21	69	23	107	23	12	0	63	1.33
45479846--45480085	44	5.5	44	91	0	354	35	1	12	50	1.51
45483480--45483610	45	2.9	44	81	14	126	38	4	3	54	1.37
45483511--45483610	23	4.4	23	76	20	95	39	4	1	56	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175